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Spontaneous coronary artery dissection v0.56 | COL4A1 | Zornitza Stark Marked gene: COL4A1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.56 | COL4A1 | Zornitza Stark Gene: col4a1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.56 | COL4A1 | Zornitza Stark Phenotypes for gene: COL4A1 were changed from CORONARY ARTERY DISSECTION, SPONTANEOUS MIM#122455 to Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps, MIM#611773 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.55 | COL4A1 | Zornitza Stark Classified gene: COL4A1 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.55 | COL4A1 | Zornitza Stark Gene: col4a1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.54 | COL4A1 | Zornitza Stark reviewed gene: COL4A1: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps, MIM#611773; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.54 | COL4A1 |
Stephanie Hesselson gene: COL4A1 was added gene: COL4A1 was added to Spontaneous coronary artery dissection. Sources: Other Mode of inheritance for gene: COL4A1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: COL4A1 were set to PMID: 35583931, 35234813, 37248441 Phenotypes for gene: COL4A1 were set to CORONARY ARTERY DISSECTION, SPONTANEOUS MIM#122455 Penetrance for gene: COL4A1 were set to unknown Review for gene: COL4A1 was set to GREEN Added comment: It is possible that rare and common variants in COL4A1 contribute to SCAD risk. 5 individuals with SCAD have been found to carry a LP variant: PMID: 35234813 reports 3x SCAD participants with a LP variant in COL4A1 p.Gly1484Arg, p.Gly495Arg, and p.Gly160Asp PMID 35583931 reports 2x SCAD participants with LP variants in COL4A1 p.Gly1198Arg and p.Ala1626Gly In a meta-GWAS for SCAD, the COL4A1/COL4A2 locus accounted for the second largest proportion of heritability for SCAD in the dataset. It contained two independent GWAS signals at this locus. (PMID 37248441) Sources: Other |
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Spontaneous coronary artery dissection v0.54 | COL3A1 | Zornitza Stark Publications for gene: COL3A1 were set to 30071989 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.53 | PKD1 | Stephanie Hesselson reviewed gene: PKD1: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 29650765,33125268,26971055,24303518,19557720,9719186,18992981,26069747,20634758,33969096,28915698; Phenotypes: CORONARY ARTERY DISSECTION SPONTANEOUS MIM#122455, POLYCYSTIC KIDNEY DISEASE 1 WITH OR WITHOUT POLYCYSTIC LIVER DISEASE, PKD1 MIM#173900; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.53 | COL3A1 | Stephanie Hesselson reviewed gene: COL3A1: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 39130004; Phenotypes: CORONARY ARTERY DISSECTION, SPONTANEOUS MIM#122455; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.53 | FLNA | Kunal Verma reviewed gene: FLNA: Rating: AMBER; Mode of pathogenicity: None; Publications: 34863227; Phenotypes: Spontaneous coronary artery dissection; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.52 |
Zornitza Stark Panel status changed from internal to public Panel types changed to Victorian Clinical Genetics Services; Rare Disease |
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Spontaneous coronary artery dissection v0.51 | YY1AP1 | Zornitza Stark reviewed gene: YY1AP1: Rating: AMBER; Mode of pathogenicity: None; Publications: ; Phenotypes: Grange syndrome, MIM# 602531; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.51 | TGFBR1 | Zornitza Stark reviewed gene: TGFBR1: Rating: AMBER; Mode of pathogenicity: None; Publications: ; Phenotypes: Loeys-Dietz syndrome 1, MIM# 609192; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.51 | MYLK | Zornitza Stark Marked gene: MYLK as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.51 | MYLK | Zornitza Stark Gene: mylk has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.51 | MYLK | Zornitza Stark reviewed gene: MYLK: Rating: AMBER; Mode of pathogenicity: None; Publications: ; Phenotypes: Aortic aneurysm, familial thoracic 7 MIM#613780; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.51 | LOX | Zornitza Stark reviewed gene: LOX: Rating: AMBER; Mode of pathogenicity: None; Publications: ; Phenotypes: Aortic aneurysm, familial thoracic 10 MIM#617168; Mode of inheritance: None | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.51 | LMX1B | Zornitza Stark Classified gene: LMX1B as Red List (low evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.51 | LMX1B | Zornitza Stark Gene: lmx1b has been classified as Red List (Low Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.50 | LMX1B | Zornitza Stark reviewed gene: LMX1B: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: Nail-patella syndrome MIM#161200; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.50 | FLNA | Zornitza Stark reviewed gene: FLNA: Rating: AMBER; Mode of pathogenicity: None; Publications: ; Phenotypes: periventricular heterotopia 1 MIM#300049; Mode of inheritance: None | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.50 | TLN1 |
Ain Roesley changed review comment from: PMID: 30888838 10x families with a single affected, all missense 5x unknown inheritance 5x inherited from n unaffected parent 1x 2 generational fam with an unaffected obligate carrier, missense variant variants reported and their counts in gnomad v4: Ala2013Thr 1091 hets 1 hom Arg297His 97 hets Thr585Met 36 hets Pro942Leu 62 hets Ala1219Val 44 hets Arg1241Trp 13 hets Ser1333Thr absent Val1964Ile 185 hets Thr2098Met 358 hets Val2440Glu absent PMID: 36103205 2x individual however only 1 has a personal history of R-SCAD Ala1574Val Sources: Literature; to: PMID: 30888838 10x families with a single affected, all missense 5x unknown inheritance 5x inherited from an unaffected parent 1x 2 generational fam with an unaffected obligate carrier, missense variant variants reported and their counts in gnomad v4: Ala2013Thr 1091 hets 1 hom Arg297His 97 hets Thr585Met 36 hets Pro942Leu 62 hets Ala1219Val 44 hets Arg1241Trp 13 hets Ser1333Thr absent Val1964Ile 185 hets Thr2098Met 358 hets Val2440Glu absent PMID: 36103205 2x individual however only 1 has a personal history of R-SCAD Ala1574Val Sources: Literature |
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Spontaneous coronary artery dissection v0.50 | LMX1B | Ain Roesley Publications for gene: LMX1B were set to 37979122; 29650765 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.49 | LMX1B | Ain Roesley Classified gene: LMX1B as Amber List (moderate evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.49 | LMX1B | Ain Roesley Gene: lmx1b has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.48 | LMX1B | Ain Roesley edited their review of gene: LMX1B: Changed rating: AMBER; Changed publications: 29650765; Changed phenotypes: Nail-patella syndrome MIM#161200 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.48 | LMX1B |
Ain Roesley changed review comment from: PMID: 37979122; listed as "likely monogenic disease effect" However, only a single patient found in literature PMID: 29650765; 1x individual with SCAD and an NMD fs this gene is constraint for LoF in gnomad v4 with only 2 hets for an NMD variant. amber so as to not miss a diagnosis Sources: Literature; to: PMID: 29650765; 1x individual with SCAD and an NMD fs this gene is constraint for LoF in gnomad v4 with only 2 hets for an NMD variant. amber so as to not miss a diagnosis Sources: Literature |
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Spontaneous coronary artery dissection v0.48 | LMX1B |
Ain Roesley changed review comment from: PMID: 37979122; listed as "likely monogenic disease effect" However, only a single patient found in literature PMID: 29650765; 1x individual with SCAD and an NMD fs Sources: Literature; to: PMID: 37979122; listed as "likely monogenic disease effect" However, only a single patient found in literature PMID: 29650765; 1x individual with SCAD and an NMD fs this gene is constraint for LoF in gnomad v4 with only 2 hets for an NMD variant. amber so as to not miss a diagnosis Sources: Literature |
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Spontaneous coronary artery dissection v0.48 | YY1AP1 | Ain Roesley Publications for gene: YY1AP1 were set to | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.47 | YY1AP1 | Ain Roesley Classified gene: YY1AP1 as Amber List (moderate evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.47 | YY1AP1 | Ain Roesley Gene: yy1ap1 has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.46 | YY1AP1 | Ain Roesley edited their review of gene: YY1AP1: Changed rating: AMBER; Changed publications: 33125268 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.46 | YY1AP1 |
Ain Roesley changed review comment from: PMID: 33125268 1x individual with a canonical splice + 1x protein truncating variant. However, phasing could not be performed no other literature found Sources: Literature; to: PMID: 33125268 1x individual with a canonical splice + 1x protein truncating variant. However, phasing could not be performed no other literature found amber so as to not miss a diagnosis Sources: Literature |
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Spontaneous coronary artery dissection v0.46 | YY1AP1 |
Ain Roesley changed review comment from: PMID: 37979122; listed as "likely monogenic disease effect" PMID: 33125268 was cited in paper above. 1x individual with a canonical splice + 1x protein truncating variant. However, phasing could not be performed no other literature found Sources: Literature; to: PMID: 33125268 1x individual with a canonical splice + 1x protein truncating variant. However, phasing could not be performed no other literature found Sources: Literature |
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Spontaneous coronary artery dissection v0.46 | PTGIR | Ain Roesley Publications for gene: PTGIR were set to 32531060; 37979122 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.45 | PTGIR |
Ain Roesley changed review comment from: PMID: 37979122; listed as "likely monogenic disease effect" PMID: 32531060; searched for 'rare' LoF variants in individuals with fibromuscular dysplasia. However, this gene is NOT LoF constraint in gnomad v4. 200 hets for an NMD variant Sources: Literature; to: PMID: 32531060; searched for 'rare' LoF variants in individuals with fibromuscular dysplasia. However, this gene is NOT LoF constraint in gnomad v4. 200 hets for an NMD variant All other papers cited PMID: 32531060 Sources: Literature |
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Spontaneous coronary artery dissection v0.45 | TLN1 | Ain Roesley Publications for gene: TLN1 were set to 30888838; 37979122 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.44 | TLN1 | Ain Roesley edited their review of gene: TLN1: Changed publications: 30888838, 36103205 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.44 | TLN1 |
Ain Roesley changed review comment from: PMID: 37979122; listed as "likely monogenic disease effect" but AMBER rating 10 unique rare heterozygous missense variants in 11 individuals were identified in a 2 generation SCAD family and 56 unrelated individuals with sporadic SCAD. All variants had a MAF of less than 0.06% and occurred within highly conserved β-integrin, F-actin, or vinculin binding domains. Incomplete penetrance was evident in the familial case and five individuals with unaffected heterozygous parents. No functional assays were conducted. Sources: Literature; to: PMID: 30888838 10x families with a single affected, all missense 5x unknown inheritance 5x inherited from n unaffected parent 1x 2 generational fam with an unaffected obligate carrier, missense variant variants reported and their counts in gnomad v4: Ala2013Thr 1091 hets 1 hom Arg297His 97 hets Thr585Met 36 hets Pro942Leu 62 hets Ala1219Val 44 hets Arg1241Trp 13 hets Ser1333Thr absent Val1964Ile 185 hets Thr2098Met 358 hets Val2440Glu absent PMID: 36103205 2x individual however only 1 has a personal history of R-SCAD Ala1574Val Sources: Literature |
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Spontaneous coronary artery dissection v0.44 | TGFBR2 | Ain Roesley Publications for gene: TGFBR2 were set to 30071989; 27879313 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.43 | TGFBR2 | Ain Roesley edited their review of gene: TGFBR2: Changed publications: 32897753, 35092149, 36103205; Changed phenotypes: Loeys-Dietz syndrome 2 MIM#610168 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.43 | TGFBR2 |
Ain Roesley changed review comment from: "Definitive" by ClinGen Aortopathy working group. Reviewed in PMID 27879313 (265 cases with variants in TGFBR2). Sources: Literature; to: PMID: 32897753 3x individuals with 2x missense and 1x +5G splice both missense variants are absent in gnomad v4 reported SCADs: circumflex coronary artery, right descending posterior coronary artery and cervico-cephalic aneurysm and arterial dissection PMID: 35092149 2x individuals from a SCAD cohort, however both without variant information PMID: 36103205 3x SCAD individuals with 2x missense variants p.Val387Leu has 569 hets + 1 hom in gnomad v4 p.Ala531Thr has 3 hets Sources: Literature |
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Spontaneous coronary artery dissection v0.43 | TGFBR1 | Ain Roesley Publications for gene: TGFBR1 were set to 36584339; 30071989; 27879313 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.42 | TGFBR1 | Ain Roesley Classified gene: TGFBR1 as Amber List (moderate evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.42 | TGFBR1 | Ain Roesley Gene: tgfbr1 has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.41 | TGFBR1 | Ain Roesley edited their review of gene: TGFBR1: Changed rating: AMBER; Changed publications: 35092149, 36103205; Changed phenotypes: Loeys-Dietz syndrome 1 MIM#609192 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.41 | TGFBR1 |
Ain Roesley changed review comment from: "Definitive" by ClinGen Aortopathy working group. Reviewed in PMID 27879313 (176 cases with variants in TGFBR1). AMBER for AR disease: PMID 36584339 Biallelic variants reported in a single family with two sibs. Presented with severe dilatation of aorta, diaphragmatic hernia, skin translucency, and profound joint laxity at birth Sources: Radboud University Medical Center, Nijmegen; to: PMID: 35092149 1x individual with SCAD, the missense has 3 hets in gnomad v4 PMID: 36103205 1x individual with R-SCAD and fhx, however the missense has 60 hets in gnomad v4 Amber so as to not miss a diagnosis |
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Spontaneous coronary artery dissection v0.41 | TGFB3 | Ain Roesley Publications for gene: TGFB3 were set to 30071989; 25835445 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.40 | TGFB3 | Ain Roesley edited their review of gene: TGFB3: Changed publications: 32897753 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.40 | TGFB3 |
Ain Roesley changed review comment from: Uncertain for isolated aneurysm, but causes broader connective tissue disorder phenotype. 43 patients from 11 reported with significant cardiovascular involvement, including thoracic/abdominal aortic aneurysm and dissection, and mitral valve disease. Other systemic features overlapped clinically with Loeys-Dietz, Shprintzen-Goldberg, and Marfan syndromes, including cleft palate, bifid uvula, skeletal overgrowth, cervical spine instability and clubfoot deformity Sources: Literature; to: PMID: 32897753 4x individuals with missense, however only 3x with personal history of SCAD Sources: Literature |
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Spontaneous coronary artery dissection v0.40 | TGFB2 | Ain Roesley Publications for gene: TGFB2 were set to 30071989; 22772371 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.39 | TGFB2 | Ain Roesley edited their review of gene: TGFB2: Changed publications: 33125268, 36103205; Changed phenotypes: Loeys-Dietz syndrome 4 MIM#614816 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.39 | TGFB2 |
Ain Roesley changed review comment from: PMID: 33125268: 2x missense in SCAD individuals PMID: 36103205 3x individuals with missense, however no personal history of SCAD, only fam history borderline amber/green Sources: Literature; to: PMID: 33125268: 2x missense in SCAD individuals PMID: 36103205 1x individual with missense and peripartum SCAD Sources: Literature |
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Spontaneous coronary artery dissection v0.39 | TGFB2 |
Ain Roesley changed review comment from: "Definitive" by ClinGen Aortopathy Working Group. PMID: 22772371: 4 families Sources: Literature; to: PMID: 33125268: 2x missense in SCAD individuals PMID: 36103205 3x individuals with missense, however no personal history of SCAD, only fam history borderline amber/green Sources: Literature |
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Spontaneous coronary artery dissection v0.39 | SMAD3 |
Ain Roesley changed review comment from: Missense variants within the MH2 domain have been suggested to exert dominant negative mechanism by disprupting the formation of homo-oligomers (PMID: 30661052) Loss-of-function proven for PTCs (PMID: 30661052) "Definitive" by ClinGen Aortopathy working group. Sources: Literature; to: PMID: 32897753 1x individual with SCAD, canonical splice variant PMID: 29650765 1x individual with SCAD, missense D258H absent in gnomad v4 PMID: 33125268 2x individuals with SCAD, 1x start loss and 1x fs PMID: 33190788 1x individual with another variant in MYH11 Sources: Literature |
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Spontaneous coronary artery dissection v0.39 | SMAD2 | Ain Roesley Publications for gene: SMAD2 were set to 29967133 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.38 | SMAD2 | Ain Roesley edited their review of gene: SMAD2: Changed publications: 32897753, 30448172 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.38 | SMAD2 | Ain Roesley edited their review of gene: SMAD2: Changed publications: PMID: 32897753, 30448172 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.38 | SMAD2 |
Ain Roesley changed review comment from: 9 individuals from 5 families with wide spectrum of autosomal dominant aortic and arterial aneurysmal disease combined with connective tissue disease similar to Marfan syndrome and Loeys-Dietz syndrome. Sources: Literature; to: PMID: 32897753 3x individuals with SCAD, all missense and absent/1 het in gnomad v4 PMID: 30448172 1x individual with a missense, absent in gnomad v4 Sources: Literature |
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Spontaneous coronary artery dissection v0.38 | MYLK | Ain Roesley Publications for gene: MYLK were set to 30071989; 27586135; 21055718; 25907466 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.37 | MYLK | Ain Roesley Classified gene: MYLK as Amber List (moderate evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.37 | MYLK | Ain Roesley Gene: mylk has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.36 | MYLK | Ain Roesley edited their review of gene: MYLK: Changed rating: AMBER; Changed publications: 33125268; Changed phenotypes: Aortic aneurysm, familial thoracic 7 MIM#613780 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.36 | MYLK |
Ain Roesley changed review comment from: Association between variants in this gene and aortic dissection established in multiple individuals and a 5-generation family (PMID 27586135;21055718;25907466). "Definitive" by Clingen Aortopathy Working Group. Sources: Literature; to: PMID: 33125268 1x SCAD individual with a stop gain 1x indiv from google search (https://medwinpublishers.com/CRIJ/unraveling-the-genetic-complexity-a-case-report-of-mylk-gene-mutation-in-a-patient-with-scad.pdf) however, the specific variant was not provided - Authors said 'a VUS was identified' Other papers from Google cite PMID: 33125268 Red/Amber rating, amber so as to not miss a diagnosis Sources: Literature |
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Spontaneous coronary artery dissection v0.36 | LOX | Ain Roesley Publications for gene: LOX were set to 30071989; 26838787; 30675029. | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.35 | LOX | Ain Roesley Classified gene: LOX as Amber List (moderate evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.35 | LOX | Ain Roesley Gene: lox has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.34 | LOX | Ain Roesley edited their review of gene: LOX: Changed rating: AMBER; Changed publications: 32897753, 36103205; Changed phenotypes: Aortic aneurysm, familial thoracic 10 MIM#617168 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.34 | LOX |
Ain Roesley changed review comment from: Reviewed as having 'strong' gene-disease association by the HTAAD working group, based on ClinGen framework (PMID: 30071989). Missense and nonsense variants described in six unrelated families with HTAAD and functional studies of three missense variants demonstrated a reduction in LOX activity (Guo et.al. (2016); PMID: 26838787). Two further individuals with negative family history: one individual has pathogenic nonsense variant and second individual has VUS missense variant (Renner et al. (2019); PMID: 30675029). Sources: Literature; to: PMID: 32897753 1x with circumflex coronary artery, possibly the same individual reported in PMID: 33125268 Met298Arg is absent in gnomad PMID: 36103205 1x however, the missense was curated as benign (97 hets in gnomad v4) Red/Amber rating - amber so as to not miss a diagnosis Sources: Literature |
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Spontaneous coronary artery dissection v0.34 | FLNA |
Ain Roesley changed review comment from: PMID: 32897753 1x individual with left anterior descending coronary artery Sources: Literature ; to: borderline red/amber but amber so as to not miss a diagnosis PMID: 32897753 1x individual with left anterior descending coronary artery Sources: Literature |
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Spontaneous coronary artery dissection v0.34 | FLNA | Ain Roesley Phenotypes for gene: FLNA were changed from periventricular heterotopia 1 MIM#300049 to Spontaneous coronary artery dissection | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.33 | FLNA | Ain Roesley Classified gene: FLNA as Amber List (moderate evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.33 | FLNA | Ain Roesley Gene: flna has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | FLNA | Ain Roesley edited their review of gene: FLNA: Changed publications: 32897753 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | FLNA |
Ain Roesley changed review comment from: Large review of 114 patients with loss-of-function FLNA mutations with periventricular nodular heterotopia (PVNH), found that most subjects had a cardiac anomaly or vascular abnormality (64.9%). Thoracic aortic aneurysms or dilatation (TAA) were found in 18.4%, and were associated with other structural cardiac malformations in 57.1% of patients (Chen et al. 2018; PMID: 29334594). PMID: 32897753 1x individual with left anterior descending coronary artery Sources: Literature ; to: PMID: 32897753 1x individual with left anterior descending coronary artery Sources: Literature |
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Spontaneous coronary artery dissection v0.32 | FLNA | Ain Roesley edited their review of gene: FLNA: Changed rating: AMBER; Changed publications: 29334594, 32897753; Changed phenotypes: periventricular heterotopia 1 MIM#300049 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | FLNA |
Ain Roesley changed review comment from: Large review of 114 patients with loss-of-function FLNA mutations with periventricular nodular heterotopia (PVNH), found that most subjects had a cardiac anomaly or vascular abnormality (64.9%). Thoracic aortic aneurysms or dilatation (TAA) were found in 18.4%, and were associated with other structural cardiac malformations in 57.1% of patients (Chen et al. 2018; PMID: 29334594). Sources: Literature; to: Large review of 114 patients with loss-of-function FLNA mutations with periventricular nodular heterotopia (PVNH), found that most subjects had a cardiac anomaly or vascular abnormality (64.9%). Thoracic aortic aneurysms or dilatation (TAA) were found in 18.4%, and were associated with other structural cardiac malformations in 57.1% of patients (Chen et al. 2018; PMID: 29334594). PMID: 32897753 1x individual with left anterior descending coronary artery Sources: Literature |
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Spontaneous coronary artery dissection v0.32 | FBN1 | Ain Roesley edited their review of gene: FBN1: Changed publications: 29357934, 34842564, 35092149; Changed phenotypes: Marfan syndrome MIM#154700, familial thoracic aortic aneurysm and aortic dissection MONDO:0019625, FBN1-related | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | FBN1 |
Ain Roesley changed review comment from: Dominant-negative and LoF (haploinsufficiency) have been reported as disease mechanisms (OMIM). PTV are associated with more severe MFS and with aortic events. Missense are associated with a milder MFS and less often result in aortic events (PMID: 29357934 ). definitive by clingen curation Sources: Literature; to: Dominant-negative and LoF (haploinsufficiency) have been reported as disease mechanisms (OMIM). PTV are associated with more severe MFS and with aortic events. Missense are associated with a milder MFS and less often result in aortic events (PMID: 29357934 ). definitive by clingen curation at least 3x individuals with Marfan + FBN1 variant have been reported with SCAD PMID: 34842564, 35092149 Sources: Literature |
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Spontaneous coronary artery dissection v0.32 | COL5A1 | Ain Roesley edited their review of gene: COL5A1: Changed publications: 32938213, 35234813; Changed phenotypes: Ehlers-Danlos syndrome, classic type, 1 MIM#130000, Fibromuscular dysplasia, multifocal MIM#619329 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | COL5A1 |
Ain Roesley changed review comment from: GeneReviews: 75-78% of classical EDS is caused by pathogenic variants in COL5A1. Haploinsufficiency is the more common disease mechanism whoeever, missense variants in the triple helical domain of the α1(V) or α2(V) chains are likely to have dominant-negative activity. (https://www.ncbi.nlm.nih.gov/books/NBK1244/) Multifocal fibromuscular dysplasia (FMDMF) is characterized histologically by medial fibroplasia and angiographically by multiple arterial stenoses with intervening mural dilations. Arterial tortuosity, macroaneurysms, dissections, and rupture may occur. 4 unrelated individuals reported, but all had the same variant, p.Gly514Ser, and haplotype analysis was consistent with founder effect. Further rare missense variants were identified in a cohort, although limited information available. Sources: Literature; to: GeneReviews: 75-78% of classical EDS is caused by pathogenic variants in COL5A1. Haploinsufficiency is the more common disease mechanism whoeever, missense variants in the triple helical domain of the α1(V) or α2(V) chains are likely to have dominant-negative activity. (https://www.ncbi.nlm.nih.gov/books/NBK1244/) SCAD individuals with variants in COL5A1 have been reported PMID: 35234813 Sources: Literature |
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Spontaneous coronary artery dissection v0.32 | COL3A1 | Ain Roesley edited their review of gene: COL3A1: Changed publications: 30071989, 32897753, 35234813 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | COL3A1 |
Ain Roesley changed review comment from: Classified as Definitive by Clingen for heritable thoracic aortic aneurysm and dissection; Ehlers-Danlos syndrome, vascular type. Sources: Literature; to: Classified as Definitive by Clingen for heritable thoracic aortic aneurysm and dissection; Ehlers-Danlos syndrome, vascular type. Several individuals with SCAD have also been reported with variants in COL3A1 PMID: 32897753 PMID: 36103205 PMID: 35234813 Sources: Literature |
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Spontaneous coronary artery dissection v0.32 | COL3A1 | Ain Roesley edited their review of gene: COL3A1: Changed publications: 30071989, 32897753; Changed phenotypes: Ehlers-Danlos syndrome, vascular type MIM#130050 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | TLN1 |
Ain Roesley changed review comment from: PMID: 37979122; listed as "likely monogenic disease effect" but AMBER rating 10 unique rare heterozygous missense variants in 11 individuals were identified in a 2 generation SCAD family and 56 unrelated individuals with sporadic SCAD. All variants had a MAF of less than 0.06% and occurred within highly conserved β-integrin, F-actin, or vinculin binding domains. Incomplete penetrance was evident in the familial case and five individuals with sporadic SCAD from whom parental DNA was available. No functional assays were conducted. Sources: Literature; to: PMID: 37979122; listed as "likely monogenic disease effect" but AMBER rating 10 unique rare heterozygous missense variants in 11 individuals were identified in a 2 generation SCAD family and 56 unrelated individuals with sporadic SCAD. All variants had a MAF of less than 0.06% and occurred within highly conserved β-integrin, F-actin, or vinculin binding domains. Incomplete penetrance was evident in the familial case and five individuals with unaffected heterozygous parents. No functional assays were conducted. Sources: Literature |
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Spontaneous coronary artery dissection v0.32 | YY1AP1 | Ain Roesley Marked gene: YY1AP1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | YY1AP1 | Ain Roesley Gene: yy1ap1 has been classified as Red List (Low Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | YY1AP1 | Ain Roesley edited their review of gene: YY1AP1: Changed publications: 37979122, 33125268 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.32 | YY1AP1 |
Ain Roesley gene: YY1AP1 was added gene: YY1AP1 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: YY1AP1 was set to BIALLELIC, autosomal or pseudoautosomal Phenotypes for gene: YY1AP1 were set to Grange syndrome, MIM# 602531 Review for gene: YY1AP1 was set to RED gene: YY1AP1 was marked as current diagnostic Added comment: PMID: 37979122; listed as "likely monogenic disease effect" PMID: 33125268 was cited in paper above. 1x individual with a canonical splice + 1x protein truncating variant. However, phasing could not be performed no other literature found Sources: Literature |
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Spontaneous coronary artery dissection v0.31 | PKD1 | Ain Roesley Publications for gene: PKD1 were set to 35630097; 26798684; 26971055 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.30 | PKD1 | Ain Roesley edited their review of gene: PKD1: Changed publications: 35630097, 26798684, 26971055, 29650765; Changed phenotypes: Polycystic kidney disease 1 MIM#173900 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.30 | PKD1 |
Ain Roesley changed review comment from: PMID: 37979122; listed as "likely monogenic disease effect" Multiple reports of SCAD in ADPKD individuals. However, genetics analysis were not performed in any of them. (PMID: 35630097, 26798684, 26971055) PMID: 35630097; Manuscript also reviews spontaneous ICA dissection with ADPKD but no variants Sources: Literature; to: PMID: 37979122; listed as "likely monogenic disease effect" Multiple reports of SCAD in ADPKD individuals. However, genetics analysis were not performed in any of them. (PMID: 35630097, 26798684, 26971055) PMID: 35630097; Manuscript also reviews spontaneous ICA dissection with ADPKD but no variants Sources: Literature PMID: 29650765; reports 1x SCAD + ADPKD Individual with Cys37Tyr which is absent in gnomad and clinvar |
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Spontaneous coronary artery dissection v0.30 | TSR1 | Ain Roesley Marked gene: TSR1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.30 | TSR1 | Ain Roesley Gene: tsr1 has been classified as Red List (Low Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.30 | TSR1 |
Ain Roesley gene: TSR1 was added gene: TSR1 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: TSR1 was set to Unknown Publications for gene: TSR1 were set to PMID: 31296288; 31296287; 37979122 Review for gene: TSR1 was set to RED gene: TSR1 was marked as current diagnostic Added comment: PMID: 37979122; listed as "likely monogenic disease effect" PMID: 31296287 was cited by paper above. SCAD cohort with WES performed and 'rare' variants filtered for. However, the variants have the following het counts in gnomad v4 Arg772Gln 27 hets 0 homs Arg622Cys 45 hets 0 homs Arg497Gln 7125 hets 33 homs Trp556* absent Arg499Pro absent M1fs absent PMID: 31296288 reviews PMID: 31296287 this gene is NOT constraint for LoF in gnomad v4 with 81 hets having an NMD nonsense hets Sources: Literature |
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Spontaneous coronary artery dissection v0.29 | TLN1 | Ain Roesley Marked gene: TLN1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.29 | TLN1 | Ain Roesley Gene: tln1 has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.29 | TLN1 | Ain Roesley Classified gene: TLN1 as Amber List (moderate evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.29 | TLN1 | Ain Roesley Gene: tln1 has been classified as Amber List (Moderate Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.28 | TLN1 |
Ain Roesley gene: TLN1 was added gene: TLN1 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: TLN1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: TLN1 were set to 30888838; 37979122 Phenotypes for gene: TLN1 were set to idiopathic spontaneous coronary artery dissection MONDO:0007385 Review for gene: TLN1 was set to AMBER gene: TLN1 was marked as current diagnostic Added comment: PMID: 37979122; listed as "likely monogenic disease effect" but AMBER rating 10 unique rare heterozygous missense variants in 11 individuals were identified in a 2 generation SCAD family and 56 unrelated individuals with sporadic SCAD. All variants had a MAF of less than 0.06% and occurred within highly conserved β-integrin, F-actin, or vinculin binding domains. Incomplete penetrance was evident in the familial case and five individuals with sporadic SCAD from whom parental DNA was available. No functional assays were conducted. Sources: Literature |
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Spontaneous coronary artery dissection v0.27 | PTGIR | Ain Roesley Marked gene: PTGIR as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.27 | PTGIR | Ain Roesley Gene: ptgir has been classified as Red List (Low Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.27 | PTGIR |
Ain Roesley gene: PTGIR was added gene: PTGIR was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: PTGIR was set to Unknown Publications for gene: PTGIR were set to 32531060; 37979122 Review for gene: PTGIR was set to RED gene: PTGIR was marked as current diagnostic Added comment: PMID: 37979122; listed as "likely monogenic disease effect" PMID: 32531060; searched for 'rare' LoF variants in individuals with fibromuscular dysplasia. However, this gene is NOT LoF constraint in gnomad v4. 200 hets for an NMD variant Sources: Literature |
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Spontaneous coronary artery dissection v0.26 | PKD1 | Ain Roesley Marked gene: PKD1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.26 | PKD1 | Ain Roesley Gene: pkd1 has been classified as Red List (Low Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.26 | PKD1 |
Ain Roesley gene: PKD1 was added gene: PKD1 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: PKD1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: PKD1 were set to 35630097; 26798684; 26971055 Phenotypes for gene: PKD1 were set to Polycystic kidney disease 1 MIM#173900 Review for gene: PKD1 was set to RED gene: PKD1 was marked as current diagnostic Added comment: PMID: 37979122; listed as "likely monogenic disease effect" Multiple reports of SCAD in ADPKD individuals. However, genetics analysis were not performed in any of them. (PMID: 35630097, 26798684, 26971055) PMID: 35630097; Manuscript also reviews spontaneous ICA dissection with ADPKD but no variants Sources: Literature |
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Spontaneous coronary artery dissection v0.25 | LMX1B | Ain Roesley Marked gene: LMX1B as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.25 | LMX1B | Ain Roesley Gene: lmx1b has been classified as Red List (Low Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.25 | LMX1B |
Ain Roesley gene: LMX1B was added gene: LMX1B was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: LMX1B was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: LMX1B were set to 37979122; 29650765 Phenotypes for gene: LMX1B were set to Nail-patella syndrome MIM#161200 Review for gene: LMX1B was set to RED gene: LMX1B was marked as current diagnostic Added comment: PMID: 37979122; listed as "likely monogenic disease effect" However, only a single patient found in literature PMID: 29650765; 1x individual with SCAD and an NMD fs Sources: Literature |
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Spontaneous coronary artery dissection v0.24 | MYLK | Ain Roesley Classified gene: MYLK as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.24 | MYLK | Ain Roesley Gene: mylk has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.23 | MYLK |
Ain Roesley gene: MYLK was added gene: MYLK was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: MYLK was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: MYLK were set to 30071989; 27586135; 21055718; 25907466 Phenotypes for gene: MYLK were set to Aortic aneurysm, familial thoracic 7 MIM#613780 Review for gene: MYLK was set to GREEN gene: MYLK was marked as current diagnostic Added comment: Association between variants in this gene and aortic dissection established in multiple individuals and a 5-generation family (PMID 27586135;21055718;25907466). "Definitive" by Clingen Aortopathy Working Group. Sources: Literature |
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Spontaneous coronary artery dissection v0.22 | LOX | Ain Roesley Marked gene: LOX as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.22 | LOX | Ain Roesley Gene: lox has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.22 | LOX | Ain Roesley Classified gene: LOX as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.22 | LOX | Ain Roesley Gene: lox has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.21 | LOX |
Ain Roesley gene: LOX was added gene: LOX was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: LOX was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: LOX were set to 30071989; 26838787; 30675029. Phenotypes for gene: LOX were set to Aortic aneurysm, familial thoracic 10 MIM#617168 Review for gene: LOX was set to GREEN gene: LOX was marked as current diagnostic Added comment: Reviewed as having 'strong' gene-disease association by the HTAAD working group, based on ClinGen framework (PMID: 30071989). Missense and nonsense variants described in six unrelated families with HTAAD and functional studies of three missense variants demonstrated a reduction in LOX activity (Guo et.al. (2016); PMID: 26838787). Two further individuals with negative family history: one individual has pathogenic nonsense variant and second individual has VUS missense variant (Renner et al. (2019); PMID: 30675029). Sources: Literature |
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Spontaneous coronary artery dissection v0.20 | FLNA | Ain Roesley Marked gene: FLNA as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.20 | FLNA | Ain Roesley Gene: flna has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.20 | FLNA | Ain Roesley Classified gene: FLNA as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.20 | FLNA | Ain Roesley Gene: flna has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.19 | FLNA |
Ain Roesley gene: FLNA was added gene: FLNA was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: FLNA was set to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males) Publications for gene: FLNA were set to 29334594 Phenotypes for gene: FLNA were set to periventricular heterotopia 1 MIM#300049 Review for gene: FLNA was set to GREEN gene: FLNA was marked as current diagnostic Added comment: Large review of 114 patients with loss-of-function FLNA mutations with periventricular nodular heterotopia (PVNH), found that most subjects had a cardiac anomaly or vascular abnormality (64.9%). Thoracic aortic aneurysms or dilatation (TAA) were found in 18.4%, and were associated with other structural cardiac malformations in 57.1% of patients (Chen et al. 2018; PMID: 29334594). Sources: Literature |
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Spontaneous coronary artery dissection v0.18 | FBN1 | Ain Roesley Marked gene: FBN1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.18 | FBN1 | Ain Roesley Gene: fbn1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.18 | FBN1 | Ain Roesley Classified gene: FBN1 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.18 | FBN1 | Ain Roesley Gene: fbn1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.17 | FBN1 |
Ain Roesley gene: FBN1 was added gene: FBN1 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: FBN1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: FBN1 were set to 29357934 Phenotypes for gene: FBN1 were set to Marfan syndrome MIM#154700; familial thoracic aortic aneurysm and aortic dissection MONDO:0019625, FBN1-related Review for gene: FBN1 was set to GREEN gene: FBN1 was marked as current diagnostic Added comment: Dominant-negative and LoF (haploinsufficiency) have been reported as disease mechanisms (OMIM). PTV are associated with more severe MFS and with aortic events. Missense are associated with a milder MFS and less often result in aortic events (PMID: 29357934 ). definitive by clingen curation Sources: Literature |
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Spontaneous coronary artery dissection v0.16 | COL5A1 | Ain Roesley Marked gene: COL5A1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.16 | COL5A1 | Ain Roesley Gene: col5a1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.16 | COL5A1 | Ain Roesley Classified gene: COL5A1 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.16 | COL5A1 | Ain Roesley Gene: col5a1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.15 | COL5A1 |
Ain Roesley gene: COL5A1 was added gene: COL5A1 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: COL5A1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: COL5A1 were set to 32938213 Phenotypes for gene: COL5A1 were set to Ehlers-Danlos syndrome, classic type, 1 MIM#130000; Fibromuscular dysplasia, multifocal MIM#619329 Review for gene: COL5A1 was set to GREEN gene: COL5A1 was marked as current diagnostic Added comment: GeneReviews: 75-78% of classical EDS is caused by pathogenic variants in COL5A1. Haploinsufficiency is the more common disease mechanism whoeever, missense variants in the triple helical domain of the α1(V) or α2(V) chains are likely to have dominant-negative activity. (https://www.ncbi.nlm.nih.gov/books/NBK1244/) Multifocal fibromuscular dysplasia (FMDMF) is characterized histologically by medial fibroplasia and angiographically by multiple arterial stenoses with intervening mural dilations. Arterial tortuosity, macroaneurysms, dissections, and rupture may occur. 4 unrelated individuals reported, but all had the same variant, p.Gly514Ser, and haplotype analysis was consistent with founder effect. Further rare missense variants were identified in a cohort, although limited information available. Sources: Literature |
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Spontaneous coronary artery dissection v0.14 | COL3A1 | Ain Roesley Marked gene: COL3A1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.14 | COL3A1 | Ain Roesley Gene: col3a1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.14 | COL3A1 | Ain Roesley Classified gene: COL3A1 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.14 | COL3A1 | Ain Roesley Gene: col3a1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.13 | COL3A1 |
Ain Roesley gene: COL3A1 was added gene: COL3A1 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: COL3A1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: COL3A1 were set to 30071989 Phenotypes for gene: COL3A1 were set to Ehlers-Danlos syndrome, vascular type MIM#130050 Review for gene: COL3A1 was set to GREEN gene: COL3A1 was marked as current diagnostic Added comment: Classified as Definitive by Clingen for heritable thoracic aortic aneurysm and dissection; Ehlers-Danlos syndrome, vascular type. Sources: Literature |
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Spontaneous coronary artery dissection v0.12 | TGFBR2 | Ain Roesley Marked gene: TGFBR2 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.12 | TGFBR2 | Ain Roesley Gene: tgfbr2 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.12 | TGFBR2 | Ain Roesley Classified gene: TGFBR2 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.12 | TGFBR2 | Ain Roesley Gene: tgfbr2 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.11 | TGFBR2 |
Ain Roesley gene: TGFBR2 was added gene: TGFBR2 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: TGFBR2 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: TGFBR2 were set to 30071989; 27879313 Phenotypes for gene: TGFBR2 were set to Loeys-Dietz syndrome 2 MIM#610168 Review for gene: TGFBR2 was set to GREEN gene: TGFBR2 was marked as current diagnostic Added comment: "Definitive" by ClinGen Aortopathy working group. Reviewed in PMID 27879313 (265 cases with variants in TGFBR2). Sources: Literature |
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Spontaneous coronary artery dissection v0.10 | TGFBR1 | Ain Roesley Marked gene: TGFBR1 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.10 | TGFBR1 | Ain Roesley Gene: tgfbr1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.10 | TGFBR1 | Ain Roesley Classified gene: TGFBR1 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.10 | TGFBR1 | Ain Roesley Gene: tgfbr1 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.9 | TGFBR1 |
Ain Roesley gene: TGFBR1 was added gene: TGFBR1 was added to Spontaneous coronary artery dissection. Sources: Radboud University Medical Center, Nijmegen Mode of inheritance for gene: TGFBR1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: TGFBR1 were set to 36584339; 30071989; 27879313 Phenotypes for gene: TGFBR1 were set to Loeys-Dietz syndrome 1 MIM#609192 Review for gene: TGFBR1 was set to GREEN gene: TGFBR1 was marked as current diagnostic Added comment: "Definitive" by ClinGen Aortopathy working group. Reviewed in PMID 27879313 (176 cases with variants in TGFBR1). AMBER for AR disease: PMID 36584339 Biallelic variants reported in a single family with two sibs. Presented with severe dilatation of aorta, diaphragmatic hernia, skin translucency, and profound joint laxity at birth Sources: Radboud University Medical Center, Nijmegen |
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Spontaneous coronary artery dissection v0.8 | TGFB3 | Ain Roesley Marked gene: TGFB3 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.8 | TGFB3 | Ain Roesley Gene: tgfb3 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.8 | TGFB3 | Ain Roesley Classified gene: TGFB3 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.8 | TGFB3 | Ain Roesley Gene: tgfb3 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.7 | TGFB3 |
Ain Roesley gene: TGFB3 was added gene: TGFB3 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: TGFB3 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: TGFB3 were set to 30071989; 25835445 Phenotypes for gene: TGFB3 were set to Loeys-Dietz syndrome 5 MIM#615582 Review for gene: TGFB3 was set to GREEN gene: TGFB3 was marked as current diagnostic Added comment: Uncertain for isolated aneurysm, but causes broader connective tissue disorder phenotype. 43 patients from 11 reported with significant cardiovascular involvement, including thoracic/abdominal aortic aneurysm and dissection, and mitral valve disease. Other systemic features overlapped clinically with Loeys-Dietz, Shprintzen-Goldberg, and Marfan syndromes, including cleft palate, bifid uvula, skeletal overgrowth, cervical spine instability and clubfoot deformity Sources: Literature |
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Spontaneous coronary artery dissection v0.6 | TGFB2 | Ain Roesley Marked gene: TGFB2 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.6 | TGFB2 | Ain Roesley Gene: tgfb2 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.6 | TGFB2 | Ain Roesley Classified gene: TGFB2 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.6 | TGFB2 | Ain Roesley Gene: tgfb2 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.5 | TGFB2 |
Ain Roesley gene: TGFB2 was added gene: TGFB2 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: TGFB2 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: TGFB2 were set to 30071989; 22772371 Phenotypes for gene: TGFB2 were set to Loeys-Dietz syndrome 4 MIM#614816 Penetrance for gene: TGFB2 were set to Complete Review for gene: TGFB2 was set to GREEN gene: TGFB2 was marked as current diagnostic Added comment: "Definitive" by ClinGen Aortopathy Working Group. PMID: 22772371: 4 families Sources: Literature |
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Spontaneous coronary artery dissection v0.4 | SMAD3 | Ain Roesley Marked gene: SMAD3 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.4 | SMAD3 | Ain Roesley Gene: smad3 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.4 | SMAD3 | Ain Roesley Classified gene: SMAD3 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.4 | SMAD3 | Ain Roesley Gene: smad3 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.3 | SMAD3 |
Ain Roesley gene: SMAD3 was added gene: SMAD3 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: SMAD3 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: SMAD3 were set to 21217753; 30661052; 30071989 Phenotypes for gene: SMAD3 were set to Loeys-Dietz syndrome 3, MIM# 613795 Review for gene: SMAD3 was set to GREEN gene: SMAD3 was marked as current diagnostic Added comment: Missense variants within the MH2 domain have been suggested to exert dominant negative mechanism by disprupting the formation of homo-oligomers (PMID: 30661052) Loss-of-function proven for PTCs (PMID: 30661052) "Definitive" by ClinGen Aortopathy working group. Sources: Literature |
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Spontaneous coronary artery dissection v0.2 | SMAD2 | Ain Roesley Marked gene: SMAD2 as ready | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.2 | SMAD2 | Ain Roesley Gene: smad2 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.2 | SMAD2 | Ain Roesley Classified gene: SMAD2 as Green List (high evidence) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.2 | SMAD2 | Ain Roesley Gene: smad2 has been classified as Green List (High Evidence). | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Spontaneous coronary artery dissection v0.1 | SMAD2 |
Ain Roesley gene: SMAD2 was added gene: SMAD2 was added to Spontaneous coronary artery dissection. Sources: Literature Mode of inheritance for gene: SMAD2 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: SMAD2 were set to 29967133 Phenotypes for gene: SMAD2 were set to Loeys-Dietz syndrome 6, MIM# 619656 Penetrance for gene: SMAD2 were set to Complete Review for gene: SMAD2 was set to GREEN gene: SMAD2 was marked as current diagnostic Added comment: 9 individuals from 5 families with wide spectrum of autosomal dominant aortic and arterial aneurysmal disease combined with connective tissue disease similar to Marfan syndrome and Loeys-Dietz syndrome. Sources: Literature |
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Spontaneous coronary artery dissection v0.0 |
Ain Roesley Added Panel Spontaneous coronary artery dissection Set panel types to: Victorian Clinical Genetics Services |