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Mendeliome v0.14232 MYOCD Zornitza Stark changed review comment from: Congenital megabladder (MGBL) is characterized by a massively dilated bladder with disrupted smooth muscle in the bladder wall. MGBL is a sex-limited trait with 95% male predominance, likely the result of differences in urethra and bladder development and length differences in urethra between males and females.

Seven affected males from three families. Five females and one male with the variant were unaffected, suggesting incomplete penetrance.

Additional family in PMID 35005812 as part of a large prenatal renal cohort.; to: Congenital megabladder (MGBL) is characterized by a massively dilated bladder with disrupted smooth muscle in the bladder wall. MGBL is a sex-limited trait with 95% male predominance, likely the result of differences in urethra and bladder development and length differences in urethra between males and females.

Seven affected males from three families. Five females and one male with the variant were unaffected, suggesting incomplete penetrance.

Additional family in PMID 35005812 as part of a large prenatal renal cohort.

Mono allelic disease in males (megabladder), bi-allelic disease in males and females (megabladder and congenital heart disease).

Mouse models.
Mendeliome v0.14232 MYOCD Zornitza Stark Marked gene: MYOCD as ready
Mendeliome v0.14232 MYOCD Zornitza Stark Gene: myocd has been classified as Green List (High Evidence).
Mendeliome v0.14232 MYOCD Zornitza Stark Phenotypes for gene: MYOCD were changed from to Megabladder, congenital, MIM# 618719
Mendeliome v0.14231 MYOCD Zornitza Stark Publications for gene: MYOCD were set to
Mendeliome v0.14230 MYOCD Zornitza Stark Mode of inheritance for gene: MYOCD was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14229 MYOCD Zornitza Stark edited their review of gene: MYOCD: Changed phenotypes: Megabladder, congenital, MIM# 618719
Mendeliome v0.14229 MYOCD Zornitza Stark reviewed gene: MYOCD: Rating: GREEN; Mode of pathogenicity: None; Publications: 31513549, 35005812; Phenotypes: Megabladder, congenital, MIM3 618719; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14229 MYOT Zornitza Stark Marked gene: MYOT as ready
Mendeliome v0.14229 MYOT Zornitza Stark Gene: myot has been classified as Green List (High Evidence).
Mendeliome v0.14229 MYOT Zornitza Stark Phenotypes for gene: MYOT were changed from to Myopathy, myofibrillar, 3, MIM# 609200; Myopathy, spheroid body, MIM# 182920
Mendeliome v0.14228 MYOT Zornitza Stark Publications for gene: MYOT were set to
Mendeliome v0.14227 MYOT Zornitza Stark Mode of inheritance for gene: MYOT was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14226 MYOT Zornitza Stark reviewed gene: MYOT: Rating: GREEN; Mode of pathogenicity: None; Publications: 10958653, 15111675, 16380616, 33250842, 32509353, 29924655; Phenotypes: Myopathy, myofibrillar, 3, MIM# 609200, Myopathy, spheroid body, MIM# 182920; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14226 FXN Bryony Thompson Phenotypes for gene: FXN were changed from to Friedreich ataxia MONDO:0100339
Mendeliome v0.14225 FXN Bryony Thompson Publications for gene: FXN were set to
Mendeliome v0.14224 FXN Bryony Thompson Mode of inheritance for gene: FXN was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14223 FXN Bryony Thompson edited their review of gene: FXN: Added comment: Well-established gene-disease association. 96% of cases are caused by biallelic intronic GAA triplet repeat expansion and 4% are attributable to biallelic single nucleotide variants and small indels. Loss of function is the mechanism of disease.; Changed rating: GREEN; Changed publications: 20301458, 26704351; Changed phenotypes: Friedreich ataxia MONDO:0100339; Changed mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Set current diagnostic: yes
Mendeliome v0.14223 RNF139 Belinda Chong reviewed gene: RNF139: Rating: RED; Mode of pathogenicity: None; Publications: 9689122; Phenotypes: Renal cell carcinoma MIM#144700; Mode of inheritance: Other
Mendeliome v0.14223 FUT8 Bryony Thompson Marked gene: FUT8 as ready
Mendeliome v0.14223 FUT8 Bryony Thompson Gene: fut8 has been classified as Green List (High Evidence).
Mendeliome v0.14223 FUT8 Bryony Thompson Phenotypes for gene: FUT8 were changed from to Congenital disorder of glycosylation with defective fucosylation 1 MONDO:0020775
Mendeliome v0.14222 FUT8 Bryony Thompson Publications for gene: FUT8 were set to
Mendeliome v0.14221 FUT8 Bryony Thompson Mode of inheritance for gene: FUT8 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14220 FUT8 Bryony Thompson reviewed gene: FUT8: Rating: GREEN; Mode of pathogenicity: None; Publications: 29304374, 34389986, 32049367, 16236725; Phenotypes: Congenital disorder of glycosylation with defective fucosylation 1 MONDO:0020775; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14220 FUT1 Bryony Thompson Marked gene: FUT1 as ready
Mendeliome v0.14220 FUT1 Bryony Thompson Gene: fut1 has been classified as Red List (Low Evidence).
Mendeliome v0.14220 FUT1 Bryony Thompson Phenotypes for gene: FUT1 were changed from to [Bombay phenotype] MIM#616754
Mendeliome v0.14219 FUT1 Bryony Thompson Classified gene: FUT1 as Red List (low evidence)
Mendeliome v0.14219 FUT1 Bryony Thompson Added comment: Comment on list classification: Biallelic loss of function variants produce the Bombay blood group, which is a recessive H-deficient red blood cell phenotype. Bombay and para-Bombay individuals display no apparent deleterious phenotype except in circumstances requiring blood transfusion. No evidence for Mendelian disease associated with this gene.
Mendeliome v0.14219 FUT1 Bryony Thompson Gene: fut1 has been classified as Red List (Low Evidence).
Mendeliome v0.14218 FUT1 Bryony Thompson Deleted their comment
Mendeliome v0.14218 FUT1 Bryony Thompson Publications for gene: FUT1 were set to
Mendeliome v0.14217 FUT1 Bryony Thompson Classified gene: FUT1 as Red List (low evidence)
Mendeliome v0.14217 FUT1 Bryony Thompson Added comment: Comment on list classification: Biallelic loss of function variants cause Bombay phenotype, which is a recessive H-deficient red blood cell phenotype. Bombay and para-Bombay individuals display no apparent deleterious phenotype except in circumstances requiring blood transfusion. No evidence for Mendelian disease associated with this gene.
Mendeliome v0.14217 FUT1 Bryony Thompson Gene: fut1 has been classified as Red List (Low Evidence).
Mendeliome v0.14216 FUT1 Bryony Thompson Mode of inheritance for gene: FUT1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14215 FSHR Bryony Thompson Marked gene: FSHR as ready
Mendeliome v0.14215 FSHR Bryony Thompson Gene: fshr has been classified as Green List (High Evidence).
Mendeliome v0.14215 FTO Bryony Thompson Marked gene: FTO as ready
Mendeliome v0.14215 FTO Bryony Thompson Gene: fto has been classified as Green List (High Evidence).
Fetal anomalies v1.27 FTO Bryony Thompson Publications for gene: FTO were set to 19559399; 26378117
Fetal anomalies v1.26 FTO Bryony Thompson Classified gene: FTO as Green List (high evidence)
Fetal anomalies v1.26 FTO Bryony Thompson Gene: fto has been classified as Green List (High Evidence).
Fetal anomalies v1.25 FTO Bryony Thompson reviewed gene: FTO: Rating: GREEN; Mode of pathogenicity: None; Publications: 19234441, 19559399, 26378117, 26697951, 26378117, 26740239; Phenotypes: Growth retardation, developmental delay, facial dysmorphism MIM#612938; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14215 FTO Bryony Thompson Publications for gene: FTO were set to
Intellectual disability syndromic and non-syndromic v0.4768 FTO Bryony Thompson Publications for gene: FTO were set to 19559399; 26378117
Intellectual disability syndromic and non-syndromic v0.4767 FTO Bryony Thompson Classified gene: FTO as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4767 FTO Bryony Thompson Gene: fto has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4766 FTO Bryony Thompson reviewed gene: FTO: Rating: GREEN; Mode of pathogenicity: None; Publications: 19559399, 26378117, 26697951, 26378117, 26740239; Phenotypes: Growth retardation, developmental delay, facial dysmorphism MIM#612938; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14214 FTO Bryony Thompson Phenotypes for gene: FTO were changed from to Growth retardation, developmental delay, facial dysmorphism MIM#612938
Mendeliome v0.14213 FTO Bryony Thompson Mode of inheritance for gene: FTO was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14212 FTO Bryony Thompson reviewed gene: FTO: Rating: GREEN; Mode of pathogenicity: None; Publications: 19234441, 19559399, 26378117, 26697951, 26378117, 26740239; Phenotypes: Growth retardation, developmental delay, facial dysmorphism MIM#612938; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14212 RIMS1 Zornitza Stark Marked gene: RIMS1 as ready
Mendeliome v0.14212 RIMS1 Zornitza Stark Gene: rims1 has been classified as Green List (High Evidence).
Mendeliome v0.14212 RIMS1 Zornitza Stark Phenotypes for gene: RIMS1 were changed from to Cone-rod dystrophy 7 , MIM#603649; Autism MONDO:0005260
Mendeliome v0.14211 RIMS1 Zornitza Stark Publications for gene: RIMS1 were set to
Mendeliome v0.14210 RIMS1 Zornitza Stark Mode of inheritance for gene: RIMS1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14209 RIMS1 Zornitza Stark reviewed gene: RIMS1: Rating: GREEN; Mode of pathogenicity: None; Publications: 12659814, 25284784, 25961944; Phenotypes: Cone-rod dystrophy 7 , MIM#603649, Autism MONDO:0005260; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Intellectual disability syndromic and non-syndromic v0.4766 RHEB Zornitza Stark Phenotypes for gene: RHEB were changed from Intellectual disability; Macrocephaly; Focal cortical dysplasia to Neurodevelopmental disorder MONDO:0700092, RHEB-related; Intellectual disability; Macrocephaly; Focal cortical dysplasia
Intellectual disability syndromic and non-syndromic v0.4765 RHEB Zornitza Stark edited their review of gene: RHEB: Changed phenotypes: Neurodevelopmental disorder MONDO:0700092, RHEB-related, Intellectual disability, Macrocephaly, Focal cortical dysplasia
Mendeliome v0.14209 RHEB Zornitza Stark Marked gene: RHEB as ready
Mendeliome v0.14209 RHEB Zornitza Stark Gene: rheb has been classified as Green List (High Evidence).
Mendeliome v0.14209 FSHR Bryony Thompson Phenotypes for gene: FSHR were changed from to Ovarian dysgenesis 1 MONDO:0024463; Ovarian hyperstimulation syndrome MONDO:0011972
Mendeliome v0.14208 RHEB Zornitza Stark Phenotypes for gene: RHEB were changed from to Neurodevelopmental disorder MONDO:0700092, RHEB-related; Intellectual disability; Macrocephaly; Focal cortical dysplasia
Mendeliome v0.14207 RHEB Zornitza Stark Publications for gene: RHEB were set to
Mendeliome v0.14206 RHEB Zornitza Stark Mode of inheritance for gene: RHEB was changed from Unknown to Other
Mendeliome v0.14205 RHEB Zornitza Stark reviewed gene: RHEB: Rating: GREEN; Mode of pathogenicity: None; Publications: 31337748, 29051493; Phenotypes: Neurodevelopmental disorder MONDO:0700092, RHEB-related, Intellectual disability, Macrocephaly, Focal cortical dysplasia; Mode of inheritance: Other
Mendeliome v0.14205 FSHR Bryony Thompson Publications for gene: FSHR were set to
Additional findings_Paediatric v0.270 MCCC2 Zornitza Stark Marked gene: MCCC2 as ready
Additional findings_Paediatric v0.270 MCCC2 Zornitza Stark Gene: mccc2 has been classified as Red List (Low Evidence).
Mendeliome v0.14204 FSHR Bryony Thompson Mode of inheritance for gene: FSHR was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Additional findings_Paediatric v0.270 MCCC2 Zornitza Stark Classified gene: MCCC2 as Red List (low evidence)
Additional findings_Paediatric v0.270 MCCC2 Zornitza Stark Gene: mccc2 has been classified as Red List (Low Evidence).
Additional findings_Paediatric v0.269 MCCC2 Zornitza Stark reviewed gene: MCCC2: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.14203 FSHR Bryony Thompson reviewed gene: FSHR: Rating: GREEN; Mode of pathogenicity: None; Publications: 16630814, 7553856, 9020851, 9769327, 20087398, 9854118, 12930928, 12930927, 17721928, 26911863; Phenotypes: Ovarian dysgenesis 1 MONDO:0024463, Ovarian hyperstimulation syndrome MONDO:0011972; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.14203 RHCE Zornitza Stark Marked gene: RHCE as ready
Mendeliome v0.14203 RHCE Zornitza Stark Gene: rhce has been classified as Green List (High Evidence).
Red cell disorders v1.17 RHCE Zornitza Stark Marked gene: RHCE as ready
Red cell disorders v1.17 RHCE Zornitza Stark Gene: rhce has been classified as Green List (High Evidence).
Red cell disorders v1.17 RHCE Zornitza Stark Classified gene: RHCE as Green List (high evidence)
Red cell disorders v1.17 RHCE Zornitza Stark Gene: rhce has been classified as Green List (High Evidence).
Red cell disorders v1.16 RHCE Zornitza Stark gene: RHCE was added
gene: RHCE was added to Red cell disorders. Sources: Expert list
Mode of inheritance for gene: RHCE was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: RHCE were set to 9657766; 16271106; 25413218
Phenotypes for gene: RHCE were set to Rh-null disease, amorph type, MIM# 617970
Review for gene: RHCE was set to GREEN
Added comment: The RH-null phenotype designates rare individuals whose red blood cells lack all Rh antigens. Clinically, Rh-null patients present mild to moderate hemolytic anemia; cells exhibit characteristic morphologic and functional abnormalities including spherocytosis, stomatocytosis, and diminished lifespan. Multiple families reported.
Sources: Expert list
Mendeliome v0.14203 RHCE Zornitza Stark Phenotypes for gene: RHCE were changed from to Rh-null disease, amorph type, MIM# 617970
Mendeliome v0.14202 RHCE Zornitza Stark Publications for gene: RHCE were set to
Mendeliome v0.14201 RHCE Zornitza Stark Mode of inheritance for gene: RHCE was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14200 RHCE Zornitza Stark reviewed gene: RHCE: Rating: GREEN; Mode of pathogenicity: None; Publications: 9657766, 16271106, 25413218; Phenotypes: Rh-null disease, amorph type, MIM# 617970; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14200 RGS9BP Zornitza Stark Marked gene: RGS9BP as ready
Mendeliome v0.14200 RGS9BP Zornitza Stark Gene: rgs9bp has been classified as Green List (High Evidence).
Mendeliome v0.14200 RGS9BP Zornitza Stark Phenotypes for gene: RGS9BP were changed from to Bradyopsia, MIM# 608415
Mendeliome v0.14199 RGS9BP Zornitza Stark Publications for gene: RGS9BP were set to
Mendeliome v0.14198 RGS9BP Zornitza Stark Mode of inheritance for gene: RGS9BP was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14197 RGS9BP Zornitza Stark reviewed gene: RGS9BP: Rating: GREEN; Mode of pathogenicity: None; Publications: 14702087, 19818506; Phenotypes: Bradyopsia, MIM# 608415; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14197 RGS9 Zornitza Stark Marked gene: RGS9 as ready
Mendeliome v0.14197 RGS9 Zornitza Stark Gene: rgs9 has been classified as Green List (High Evidence).
Mendeliome v0.14197 RGS9 Zornitza Stark Phenotypes for gene: RGS9 were changed from to Bradyopsia, MIM# 608415
Mendeliome v0.14196 RGS9 Zornitza Stark Publications for gene: RGS9 were set to
Mendeliome v0.14195 RGS9 Zornitza Stark Mode of inheritance for gene: RGS9 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14194 RGS9 Zornitza Stark reviewed gene: RGS9: Rating: GREEN; Mode of pathogenicity: None; Publications: 14702087, 10676965, 19818506; Phenotypes: Bradyopsia, MIM# 608415; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14194 RFX6 Zornitza Stark reviewed gene: RFX6: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Mitchell-Riley syndrome, MIM# 615710; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14194 RFX6 Zornitza Stark Marked gene: RFX6 as ready
Mendeliome v0.14194 RFX6 Zornitza Stark Gene: rfx6 has been classified as Green List (High Evidence).
Mendeliome v0.14194 RFX6 Zornitza Stark Phenotypes for gene: RFX6 were changed from to Mitchell-Riley syndrome, MIM# 615710
Mendeliome v0.14193 RFX6 Zornitza Stark Publications for gene: RFX6 were set to
Cholestasis v0.232 SEMA7A Zornitza Stark Marked gene: SEMA7A as ready
Cholestasis v0.232 SEMA7A Zornitza Stark Gene: sema7a has been classified as Amber List (Moderate Evidence).
Cholestasis v0.232 SEMA7A Zornitza Stark Classified gene: SEMA7A as Amber List (moderate evidence)
Cholestasis v0.232 SEMA7A Zornitza Stark Gene: sema7a has been classified as Amber List (Moderate Evidence).
Cholestasis v0.231 SEMA7A Zornitza Stark gene: SEMA7A was added
gene: SEMA7A was added to Cholestasis. Sources: Expert list
Mode of inheritance for gene: SEMA7A was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: SEMA7A were set to 34585848
Phenotypes for gene: SEMA7A were set to Cholestasis, progressive familial intrahepatic, 11 , MIM# 619874
Review for gene: SEMA7A was set to AMBER
Added comment: Pan et al 2021 (PMID:34585848) identified a homozygous missense variant (gnomad: 107 hets 0 homs) in a child with progressive familial intrahepatic cholestasis. Homozygous mice recapitulated the patient phenotype.
Sources: Expert list
Mendeliome v0.14192 SEMA7A Zornitza Stark Phenotypes for gene: SEMA7A were changed from Decreased bone mineral density; Kallmann syndrome; progressive familial intrahepatic cholestasis to Decreased bone mineral density; Kallmann syndrome; Cholestasis, progressive familial intrahepatic, 11 , MIM# 619874
Mendeliome v0.14191 SEMA7A Zornitza Stark edited their review of gene: SEMA7A: Changed rating: AMBER; Changed phenotypes: Cholestasis, progressive familial intrahepatic, 11 , MIM# 619874; Changed mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14191 FXYD6 Bryony Thompson Marked gene: FXYD6 as ready
Mendeliome v0.14191 FXYD6 Bryony Thompson Gene: fxyd6 has been classified as Red List (Low Evidence).
Mendeliome v0.14191 FXYD6 Bryony Thompson Phenotypes for gene: FXYD6 were changed from to Schizophrenia MONDO:0005090
Mendeliome v0.14190 FXYD6 Bryony Thompson Publications for gene: FXYD6 were set to
Mendeliome v0.14189 FXYD6 Bryony Thompson Classified gene: FXYD6 as Red List (low evidence)
Mendeliome v0.14189 FXYD6 Bryony Thompson Gene: fxyd6 has been classified as Red List (Low Evidence).
Mendeliome v0.14188 FXYD6 Bryony Thompson reviewed gene: FXYD6: Rating: RED; Mode of pathogenicity: None; Publications: 17357072, 26193471, 29895895; Phenotypes: Schizophrenia MONDO:0005090; Mode of inheritance: None
Mendeliome v0.14188 FZD2 Bryony Thompson Marked gene: FZD2 as ready
Mendeliome v0.14188 FZD2 Bryony Thompson Gene: fzd2 has been classified as Green List (High Evidence).
Mendeliome v0.14188 FZD2 Bryony Thompson Phenotypes for gene: FZD2 were changed from to Autosomal dominant omodysplasia MONDO:0008123
Mendeliome v0.14187 FZD2 Bryony Thompson Publications for gene: FZD2 were set to
Regression v0.475 FBP2 Zornitza Stark Marked gene: FBP2 as ready
Regression v0.475 FBP2 Zornitza Stark Gene: fbp2 has been classified as Amber List (Moderate Evidence).
Regression v0.475 FBP2 Zornitza Stark Classified gene: FBP2 as Amber List (moderate evidence)
Regression v0.475 FBP2 Zornitza Stark Gene: fbp2 has been classified as Amber List (Moderate Evidence).
Regression v0.474 FBP2 Zornitza Stark gene: FBP2 was added
gene: FBP2 was added to Regression. Sources: Expert list
Mode of inheritance for gene: FBP2 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: FBP2 were set to 33977262
Phenotypes for gene: FBP2 were set to Leukodystrophy, childhood-onset, remitting, MIM# 619864
Review for gene: FBP2 was set to AMBER
Added comment: 8 individuals from 3 generations in a single family reported with a variant in this gene. The children presented with episode of regression and leukodystrophy in early childhood, from which they made a slow recovery. The adults had a broad range of neurobehavioural phenotypes but also had leukodystrophy on imaging. Some functional data presented (in vitro).
Sources: Expert list
Mendeliome v0.14186 FBP2 Zornitza Stark Marked gene: FBP2 as ready
Mendeliome v0.14186 FBP2 Zornitza Stark Gene: fbp2 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14186 FBP2 Zornitza Stark Classified gene: FBP2 as Amber List (moderate evidence)
Mendeliome v0.14186 FBP2 Zornitza Stark Gene: fbp2 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14185 FBP2 Zornitza Stark gene: FBP2 was added
gene: FBP2 was added to Mendeliome. Sources: Expert list
Mode of inheritance for gene: FBP2 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: FBP2 were set to 33977262
Phenotypes for gene: FBP2 were set to Leukodystrophy, childhood-onset, remitting, MIM# 619864
Review for gene: FBP2 was set to AMBER
Added comment: 8 individuals from 3 generations in a single family reported with a variant in this gene. The children presented with episode of regression and leukodystrophy in early childhood, from which they made a slow recovery. The adults had a broad range of neurobehavioural phenotypes but also had leukodystrophy on imaging. Some functional data presented (in vitro).
Sources: Expert list
Leukodystrophy - paediatric v0.266 FBP2 Zornitza Stark Marked gene: FBP2 as ready
Leukodystrophy - paediatric v0.266 FBP2 Zornitza Stark Gene: fbp2 has been classified as Amber List (Moderate Evidence).
Leukodystrophy - paediatric v0.266 FBP2 Zornitza Stark Classified gene: FBP2 as Amber List (moderate evidence)
Leukodystrophy - paediatric v0.266 FBP2 Zornitza Stark Gene: fbp2 has been classified as Amber List (Moderate Evidence).
Leukodystrophy - paediatric v0.265 FBP2 Zornitza Stark gene: FBP2 was added
gene: FBP2 was added to Leukodystrophy - paediatric. Sources: Expert list
Mode of inheritance for gene: FBP2 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: FBP2 were set to 33977262
Phenotypes for gene: FBP2 were set to Leukodystrophy, childhood-onset, remitting, MIM# 619864
Review for gene: FBP2 was set to AMBER
Added comment: 8 individuals from 3 generations in a single family reported with a variant in this gene. The children presented with episode of regression and leukodystrophy in early childhood, from which they made a slow recovery. The adults had a broad range of neurobehavioural phenotypes but also had leukodystrophy on imaging.

Some functional data presented (in vitro).
Sources: Expert list
Mendeliome v0.14184 TLR7 Zornitza Stark Phenotypes for gene: TLR7 were changed from Immunodeficiency 74, COVID19-related, X-linked, MIM# 301051 to Immunodeficiency 74, COVID19-related, X-linked, MIM# 301051; Systemic lupus erythematosus 17, MIM# 301080
Mendeliome v0.14183 TLR7 Zornitza Stark Publications for gene: TLR7 were set to 32706371
Mendeliome v0.14182 TLR7 Zornitza Stark Mode of inheritance for gene: TLR7 was changed from X-LINKED: hemizygous mutation in males, biallelic mutations in females to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Mendeliome v0.14181 TLR7 Zornitza Stark changed review comment from: Four affected individuals from two unrelated families and some functional data.; to: Immunodeficiency: Four affected individuals from two unrelated families and some functional data.
Mendeliome v0.14181 TLR7 Zornitza Stark edited their review of gene: TLR7: Added comment: SLE
XLD: only affected females reported; 4 individuals from three unrelated families. Mouse model.; Changed publications: 32706371, 35477763; Changed phenotypes: Immunodeficiency 74, COVID19-related, X-linked, MIM# 301051, Systemic lupus erythematosus 17, MIM# 301080; Changed mode of inheritance: X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Disorders of immune dysregulation v0.138 TLR7 Zornitza Stark Marked gene: TLR7 as ready
Disorders of immune dysregulation v0.138 TLR7 Zornitza Stark Gene: tlr7 has been classified as Green List (High Evidence).
Disorders of immune dysregulation v0.138 TLR7 Zornitza Stark Mode of inheritance for gene: TLR7 was changed from X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males) to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Disorders of immune dysregulation v0.137 TLR7 Zornitza Stark Classified gene: TLR7 as Green List (high evidence)
Disorders of immune dysregulation v0.137 TLR7 Zornitza Stark Gene: tlr7 has been classified as Green List (High Evidence).
Disorders of immune dysregulation v0.136 TLR7 Zornitza Stark gene: TLR7 was added
gene: TLR7 was added to Disorders of immune dysregulation. Sources: Expert list
Mode of inheritance for gene: TLR7 was set to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Publications for gene: TLR7 were set to 35477763
Phenotypes for gene: TLR7 were set to Systemic lupus erythematosus 17, MIM# 301080
Review for gene: TLR7 was set to GREEN
Added comment: XLD: only affected females reported; 4 individuals from three unrelated families. Mouse model.
Sources: Expert list
Mendeliome v0.14181 MOV10L1 Zornitza Stark Marked gene: MOV10L1 as ready
Mendeliome v0.14181 MOV10L1 Zornitza Stark Gene: mov10l1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14181 MOV10L1 Zornitza Stark Classified gene: MOV10L1 as Amber List (moderate evidence)
Mendeliome v0.14181 MOV10L1 Zornitza Stark Gene: mov10l1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14180 MOV10L1 Zornitza Stark gene: MOV10L1 was added
gene: MOV10L1 was added to Mendeliome. Sources: Expert list
Mode of inheritance for gene: MOV10L1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: MOV10L1 were set to 35476666; 20534472
Phenotypes for gene: MOV10L1 were set to Spermatogenic failure 73, MIM#619878
Review for gene: MOV10L1 was set to AMBER
Added comment: Two unrelated individuals and a mouse model.
Sources: Expert list
Mendeliome v0.14179 RFX6 Zornitza Stark Mode of inheritance for gene: RFX6 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14178 RFC2 Zornitza Stark Marked gene: RFC2 as ready
Mendeliome v0.14178 RFC2 Zornitza Stark Gene: rfc2 has been classified as Red List (Low Evidence).
Mendeliome v0.14178 RFC2 Zornitza Stark Classified gene: RFC2 as Red List (low evidence)
Mendeliome v0.14178 RFC2 Zornitza Stark Gene: rfc2 has been classified as Red List (Low Evidence).
Mendeliome v0.14177 RFC2 Zornitza Stark reviewed gene: RFC2: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.14177 REST Zornitza Stark Marked gene: REST as ready
Mendeliome v0.14177 REST Zornitza Stark Gene: rest has been classified as Green List (High Evidence).
Mendeliome v0.14177 REST Zornitza Stark Phenotypes for gene: REST were changed from to Deafness, autosomal dominant 27, MIM# 612431; {Wilms tumor 6, susceptibility to}, MIM# 616806; Fibromatosis, gingival, 5, MIM# 617626
Mendeliome v0.14176 REST Zornitza Stark Publications for gene: REST were set to
Mendeliome v0.14175 REST Zornitza Stark Mode of inheritance for gene: REST was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Deafness_Isolated v1.32 REST Zornitza Stark Marked gene: REST as ready
Deafness_Isolated v1.32 REST Zornitza Stark Gene: rest has been classified as Amber List (Moderate Evidence).
Deafness_Isolated v1.32 REST Zornitza Stark Classified gene: REST as Amber List (moderate evidence)
Deafness_Isolated v1.32 REST Zornitza Stark Gene: rest has been classified as Amber List (Moderate Evidence).
Deafness_Isolated v1.31 REST Zornitza Stark gene: REST was added
gene: REST was added to Deafness_Isolated. Sources: Expert list
Mode of inheritance for gene: REST was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: REST were set to 29961578; 34828371
Phenotypes for gene: REST were set to Deafness, autosomal dominant 27, MIM# 612431
Review for gene: REST was set to AMBER
Added comment: 2 families reported.
Sources: Expert list
Mendeliome v0.14174 REST Zornitza Stark reviewed gene: REST: Rating: GREEN; Mode of pathogenicity: None; Publications: 29961578, 34828371, 26551668, 28686854; Phenotypes: Deafness, autosomal dominant 27, MIM# 612431, {Wilms tumor 6, susceptibility to}, MIM# 616806, Fibromatosis, gingival, 5, MIM# 617626; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14174 REEP6 Zornitza Stark Marked gene: REEP6 as ready
Mendeliome v0.14174 REEP6 Zornitza Stark Gene: reep6 has been classified as Green List (High Evidence).
Mendeliome v0.14174 REEP6 Zornitza Stark Phenotypes for gene: REEP6 were changed from to Retinitis pigmentosa 77, MIM# 617304
Mendeliome v0.14173 REEP6 Zornitza Stark Publications for gene: REEP6 were set to
Mendeliome v0.14172 RP1 Belinda Chong reviewed gene: RP1: Rating: GREEN; Mode of pathogenicity: None; Publications: 10391211, 10465120, 10465120, 10484783, 29425069, 31213501; Phenotypes: Retinitis pigmentosa 1 MIM#180100; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Retinitis pigmentosa_Autosomal Dominant v0.51 RP1 Belinda Chong reviewed gene: RP1: Rating: GREEN; Mode of pathogenicity: None; Publications: 10391211, 10391211, 29425069; Phenotypes: Retinitis pigmentosa 1 MIM#180100; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.14172 REEP6 Zornitza Stark Mode of inheritance for gene: REEP6 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14171 REEP6 Zornitza Stark reviewed gene: REEP6: Rating: GREEN; Mode of pathogenicity: None; Publications: 27889058, 33917198, 31538292, 29120066, 28475715; Phenotypes: Retinitis pigmentosa 77, MIM# 617304; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Retinitis pigmentosa_Autosomal Dominant v0.51 RP1 Belinda Chong Deleted their review
Mendeliome v0.14171 RCBTB1 Zornitza Stark Marked gene: RCBTB1 as ready
Mendeliome v0.14171 RCBTB1 Zornitza Stark Gene: rcbtb1 has been classified as Green List (High Evidence).
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 RP1 Belinda Chong reviewed gene: RP1: Rating: GREEN; Mode of pathogenicity: None; Publications: 31213501, 15863674, 15863674; Phenotypes: Retinitis pigmentosa 1 MIM#180100; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.14171 RCBTB1 Zornitza Stark Phenotypes for gene: RCBTB1 were changed from to Retinal dystrophy with or without extraocular anomalies, MIM# 617175
Mendeliome v0.14170 RCBTB1 Zornitza Stark Publications for gene: RCBTB1 were set to
Mendeliome v0.14169 RCBTB1 Zornitza Stark Mode of inheritance for gene: RCBTB1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14168 RCBTB1 Zornitza Stark reviewed gene: RCBTB1: Rating: GREEN; Mode of pathogenicity: None; Publications: 27486781, 35057699, 33624564, 33104391; Phenotypes: Retinal dystrophy with or without extraocular anomalies, MIM# 617175; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 RP1 Belinda Chong Deleted their review
Retinitis pigmentosa_Autosomal Dominant v0.51 RP1 Belinda Chong commented on gene: RP1: RPI refers to a heterogeneous group of inherited ocular diseases that result in a progressive retinal degeneration affecting. Retinitis pigmentosa-1 (RP1) is caused by heterozygous, homozygous, or compound heterozygous mutation in the ORP1 gene (RP1).

Dominant inheritance form(s) in 3 to 4% of cases
Retinitis pigmentosa_Autosomal Dominant v0.51 RP1 Belinda Chong reviewed gene: RP1: Rating: ; Mode of pathogenicity: None; Publications: 10391211, 10465120, 10465120, 10484783, 29425069, 31213501; Phenotypes: Retinitis pigmentosa 1 MIM#180100; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 RP1 Belinda Chong reviewed gene: RP1: Rating: ; Mode of pathogenicity: None; Publications: 10391211, 10465120, 10465120, 10484783, 29425069, 31213501; Phenotypes: Retinitis pigmentosa 1 MIM#180100; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.14168 FZD2 Bryony Thompson Mode of inheritance for gene: FZD2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14167 FZD2 Bryony Thompson reviewed gene: FZD2: Rating: GREEN; Mode of pathogenicity: None; Publications: 25759469, 30455931, 29383834, 29230162; Phenotypes: Autosomal dominant omodysplasia MONDO:0008123; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14167 FSHB Bryony Thompson Marked gene: FSHB as ready
Mendeliome v0.14167 FSHB Bryony Thompson Gene: fshb has been classified as Green List (High Evidence).
Mendeliome v0.14167 FSHB Bryony Thompson Phenotypes for gene: FSHB were changed from to Hypogonadotropic hypogonadism 24 without anosmia MONDO:0009239
Mendeliome v0.14166 FSHB Bryony Thompson Publications for gene: FSHB were set to
Mendeliome v0.14165 FSHB Bryony Thompson Mode of inheritance for gene: FSHB was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14164 FSHB Bryony Thompson reviewed gene: FSHB: Rating: GREEN; Mode of pathogenicity: None; Publications: 8220432, 9280841, 9624193, 9806482, 9271483, 16630814; Phenotypes: Hypogonadotropic hypogonadism 24 without anosmia MONDO:0009239; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14164 FRZB Bryony Thompson Marked gene: FRZB as ready
Mendeliome v0.14164 FRZB Bryony Thompson Gene: frzb has been classified as Red List (Low Evidence).
Mendeliome v0.14164 FRZB Bryony Thompson Phenotypes for gene: FRZB were changed from to {Osteoarthritis susceptibility 1} MIM#165720
Mendeliome v0.14163 FRRS1L Bryony Thompson Marked gene: FRRS1L as ready
Mendeliome v0.14163 FRRS1L Bryony Thompson Gene: frrs1l has been classified as Green List (High Evidence).
Mendeliome v0.14163 FRRS1L Bryony Thompson Phenotypes for gene: FRRS1L were changed from to Developmental and epileptic encephalopathy, 37 MONDO:0014859
Mendeliome v0.14162 FRZB Bryony Thompson Publications for gene: FRZB were set to
Mendeliome v0.14161 FRZB Bryony Thompson Classified gene: FRZB as Red List (low evidence)
Mendeliome v0.14161 FRZB Bryony Thompson Gene: frzb has been classified as Red List (Low Evidence).
Mendeliome v0.14160 FRRS1L Bryony Thompson Publications for gene: FRRS1L were set to
Mendeliome v0.14159 FRRS1L Bryony Thompson Mode of inheritance for gene: FRRS1L was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14158 FRZB Bryony Thompson reviewed gene: FRZB: Rating: RED; Mode of pathogenicity: None; Publications: 15210948; Phenotypes: {Osteoarthritis susceptibility 1} MIM#165720; Mode of inheritance: Unknown
Mendeliome v0.14158 FRRS1L Bryony Thompson reviewed gene: FRRS1L: Rating: GREEN; Mode of pathogenicity: None; Publications: 27236917, 27239025, 30692144; Phenotypes: Developmental and epileptic encephalopathy, 37 MONDO:0014859; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14158 FOXN1 Bryony Thompson Marked gene: FOXN1 as ready
Mendeliome v0.14158 FOXN1 Bryony Thompson Gene: foxn1 has been classified as Green List (High Evidence).
Mendeliome v0.14158 RBPJ Zornitza Stark Marked gene: RBPJ as ready
Mendeliome v0.14158 RBPJ Zornitza Stark Gene: rbpj has been classified as Green List (High Evidence).
Mendeliome v0.14158 RBPJ Zornitza Stark Phenotypes for gene: RBPJ were changed from to Adams-Oliver syndrome 3, MIM# 614814
Mendeliome v0.14157 FOXN1 Bryony Thompson Phenotypes for gene: FOXN1 were changed from to T-cell immunodeficiency, congenital alopecia, and nail dystrophy MONDO:0011132
Mendeliome v0.14156 RBPJ Zornitza Stark Publications for gene: RBPJ were set to
Mendeliome v0.14155 RBPJ Zornitza Stark Mode of inheritance for gene: RBPJ was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14154 RBPJ Zornitza Stark reviewed gene: RBPJ: Rating: GREEN; Mode of pathogenicity: None; Publications: 22883147, 29924900; Phenotypes: Adams-Oliver syndrome 3, MIM# 614814; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14154 FOXN1 Bryony Thompson Publications for gene: FOXN1 were set to
Mendeliome v0.14153 FOXN1 Bryony Thompson Mode of inheritance for gene: FOXN1 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.14152 FOXN1 Bryony Thompson reviewed gene: FOXN1: Rating: GREEN; Mode of pathogenicity: None; Publications: 10206641, 20978268, 20978268, 28636882, 31566583, 31447097; Phenotypes: T-cell immunodeficiency, congenital alopecia, and nail dystrophy MONDO:0011132; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Severe Combined Immunodeficiency (absent T present B cells) v1.0 FOXN1 Bryony Thompson Deleted their comment
Mendeliome v0.14152 FOXI1 Bryony Thompson Marked gene: FOXI1 as ready
Mendeliome v0.14152 FOXI1 Bryony Thompson Gene: foxi1 has been classified as Green List (High Evidence).
Deafness_IsolatedAndComplex v1.133 FOXI1 Bryony Thompson Phenotypes for gene: FOXI1 were changed from Enlarged vestibular aqueduct, MIM# 600791 to autosomal recessive distal renal tubular acidosis MONDO:0018440
Mendeliome v0.14152 FOXI1 Bryony Thompson Phenotypes for gene: FOXI1 were changed from to autosomal recessive distal renal tubular acidosis MONDO:0018440
Mendeliome v0.14151 FOXI1 Bryony Thompson Publications for gene: FOXI1 were set to
Deafness_Isolated v1.30 FOXI1 Bryony Thompson Phenotypes for gene: FOXI1 were changed from Hearing loss and renal tubular acidosis to enlarged vestibular aqueduct syndrome MONDO:0023069
Deafness_Isolated v1.29 FOXI1 Bryony Thompson Classified gene: FOXI1 as Red List (low evidence)
Deafness_Isolated v1.29 FOXI1 Bryony Thompson Added comment: Comment on list classification: There is limited evidence for an association of this gene with isolated deafness. There is stronger evidence for an association with biallelic syndromic deafness (distal renal tubular acidosis with deafness), thus this gene is green on the deafness isolated and complex panel.
Deafness_Isolated v1.29 FOXI1 Bryony Thompson Gene: foxi1 has been classified as Red List (Low Evidence).
Deafness_Isolated v1.28 FOXI1 Bryony Thompson reviewed gene: FOXI1: Rating: RED; Mode of pathogenicity: None; Publications: 17503324, 30268946, 27997596, 22285650, 23965030, 24860705, 32447495, 19204907; Phenotypes: enlarged vestibular aqueduct syndrome MONDO:0023069; Mode of inheritance: Other
Deafness_IsolatedAndComplex v1.132 FOXI1 Bryony Thompson Publications for gene: FOXI1 were set to 29242249; 9843211; 17503324
Deafness_IsolatedAndComplex v1.131 FOXI1 Bryony Thompson reviewed gene: FOXI1: Rating: GREEN; Mode of pathogenicity: None; Publications: 9843211, 12642503, 29242249, 17503324, 30268946, 27997596, 22285650, 23965030, 24860705, 32447495, 19204907; Phenotypes: autosomal recessive distal renal tubular acidosis MONDO:0018440; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14150 FOXI1 Bryony Thompson Mode of inheritance for gene: FOXI1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14149 FOXI1 Bryony Thompson reviewed gene: FOXI1: Rating: GREEN; Mode of pathogenicity: None; Publications: 9843211, 12642503, 29242249, 17503324, 30268946, 27997596, 22285650, 23965030, 24860705, 32447495, 19204907; Phenotypes: autosomal recessive distal renal tubular acidosis MONDO:0018440; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14149 FOXD3 Bryony Thompson Marked gene: FOXD3 as ready
Mendeliome v0.14149 FOXD3 Bryony Thompson Gene: foxd3 has been classified as Red List (Low Evidence).
Mendeliome v0.14149 FOXD3 Bryony Thompson Phenotypes for gene: FOXD3 were changed from to Autoimmune disease, susceptibility to, 1 MONDO:0011919
Mendeliome v0.14148 FOXD3 Bryony Thompson Publications for gene: FOXD3 were set to
Mendeliome v0.14147 FOXD3 Bryony Thompson Classified gene: FOXD3 as Red List (low evidence)
Mendeliome v0.14147 FOXD3 Bryony Thompson Gene: foxd3 has been classified as Red List (Low Evidence).
Early-onset Parkinson disease v0.131 FXTAS Bryony Thompson Marked STR: FXTAS as ready
Early-onset Parkinson disease v0.131 FXTAS Bryony Thompson Str: fxtas has been classified as Green List (High Evidence).
Mendeliome v0.14146 FOXD3 Bryony Thompson reviewed gene: FOXD3: Rating: RED; Mode of pathogenicity: None; Publications: 16098053; Phenotypes: Autoimmune disease, susceptibility to, 1 MONDO:0011919; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Early-onset Parkinson disease v0.131 FXTAS Bryony Thompson Classified STR: FXTAS as Green List (high evidence)
Early-onset Parkinson disease v0.131 FXTAS Bryony Thompson Str: fxtas has been classified as Green List (High Evidence).
Early-onset Parkinson disease v0.130 FXTAS Bryony Thompson STR: FXTAS was added
STR: FXTAS was added to Early-onset Parkinson disease. Sources: Literature
Mode of inheritance for STR: FXTAS was set to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Publications for STR: FXTAS were set to 27340021; 28176767; 20301558; 23765048; 25227148; 11445641
Phenotypes for STR: FXTAS were set to Fragile X tremor/ataxia syndrome MIM#300623
Review for STR: FXTAS was set to GREEN
STR: FXTAS was marked as clinically relevant
Added comment: Parkinsonism is a common feature of FXTAS, which is associated with the premutation.
HGVS nomenclature - NM_002024.5:c.-129_-127CGG[X]
RNA-mediated toxicity may result in the FXTAS phenotype, whereas loss of function through methylation silencing of FMR1 is associated with the FXS phenotype.
Intermediate (grey zone, inconclusive, borderline): ~45 to ~54 repeats
Premutation - risk of FXTAS: ~55 to ~200 repeats
Full mutation - fragile X syndrome (FXS): >200 repeats
Sources: Literature
Early-onset Parkinson disease v0.129 FMR1 Bryony Thompson Phenotypes for gene: FMR1 were changed from Fragile X tremor/ataxia syndrome MIM#300623; Fragile X syndrome MIM#300624 to Fragile X tremor/ataxia syndrome MIM#300623
Early-onset Parkinson disease v0.128 FMR1 Bryony Thompson Publications for gene: FMR1 were set to 27340021; 28176767
Early-onset Parkinson disease v0.127 FMR1 Bryony Thompson changed review comment from: Parkinsonism can be a relatively common feature of the condition. The major cause of the condition is 5'UTR repeat expansion, but at least 6 pathogenic intragenic SNV or small indels have been reported in affected males.; to: Parkinsonism can be a relatively common feature of FXTAS, which is caused by 5'UTR repeat expansion.
Early-onset Parkinson disease v0.127 FMR1 Bryony Thompson edited their review of gene: FMR1: Changed publications: 27340021, 28176767, 20301558; Changed phenotypes: Fragile X tremor/ataxia syndrome MIM#300623
Mendeliome v0.14146 FMR1 Bryony Thompson Marked gene: FMR1 as ready
Mendeliome v0.14146 FMR1 Bryony Thompson Gene: fmr1 has been classified as Green List (High Evidence).
Early-onset Parkinson disease v0.127 FMR1 Bryony Thompson Classified gene: FMR1 as No list
Early-onset Parkinson disease v0.127 FMR1 Bryony Thompson Added comment: Comment on list classification: Parkinsonism is a feature of FXTAS and is not reported in cases with intragenic variants, which have the FXS phenotype. Added as an STR.
Early-onset Parkinson disease v0.127 FMR1 Bryony Thompson Gene: fmr1 has been removed from the panel.
Mendeliome v0.14146 FMR1 Bryony Thompson Phenotypes for gene: FMR1 were changed from to Fragile X syndrome MONDO:0010383
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 RBP3 Zornitza Stark Marked gene: RBP3 as ready
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 RBP3 Zornitza Stark Gene: rbp3 has been classified as Green List (High Evidence).
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 RBP3 Zornitza Stark reviewed gene: RBP3: Rating: GREEN; Mode of pathogenicity: None; Publications: 19074801, 29571629, 26066594, 25766589; Phenotypes: Retinitis pigmentosa 66, MIM# 615233; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14145 RBP3 Zornitza Stark Marked gene: RBP3 as ready
Mendeliome v0.14145 RBP3 Zornitza Stark Gene: rbp3 has been classified as Green List (High Evidence).
Mendeliome v0.14145 RBP3 Zornitza Stark Phenotypes for gene: RBP3 were changed from to Retinitis pigmentosa 66, MIM# 615233
Mendeliome v0.14144 RBP3 Zornitza Stark Publications for gene: RBP3 were set to
Mendeliome v0.14143 RBP3 Zornitza Stark Mode of inheritance for gene: RBP3 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14142 RBP3 Zornitza Stark reviewed gene: RBP3: Rating: GREEN; Mode of pathogenicity: None; Publications: 19074801, 29571629, 26066594, 25766589; Phenotypes: Retinitis pigmentosa 66, MIM# 615233; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Pituitary hormone deficiency v0.26 RBM28 Zornitza Stark Marked gene: RBM28 as ready
Pituitary hormone deficiency v0.26 RBM28 Zornitza Stark Gene: rbm28 has been classified as Amber List (Moderate Evidence).
Pituitary hormone deficiency v0.26 RBM28 Zornitza Stark Phenotypes for gene: RBM28 were changed from ANE syndrome; ?Alopecia, neurologic defects, and endocrinopathy syndrome (612079) to ANE syndrome; Alopecia, neurologic defects, and endocrinopathy syndrome (612079)
Pituitary hormone deficiency v0.25 RBM28 Zornitza Stark Publications for gene: RBM28 were set to 20231366
Pituitary hormone deficiency v0.24 RBM28 Zornitza Stark Classified gene: RBM28 as Amber List (moderate evidence)
Pituitary hormone deficiency v0.24 RBM28 Zornitza Stark Gene: rbm28 has been classified as Amber List (Moderate Evidence).
Pituitary hormone deficiency v0.23 RBM28 Zornitza Stark reviewed gene: RBM28: Rating: AMBER; Mode of pathogenicity: None; Publications: 18439547, 33941690; Phenotypes: Alopecia, neurologic defects, and endocrinopathy syndrome, MIM#612079; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4765 RBM28 Zornitza Stark Publications for gene: RBM28 were set to 18439547
Mendeliome v0.14142 RBM28 Zornitza Stark Marked gene: RBM28 as ready
Mendeliome v0.14142 RBM28 Zornitza Stark Gene: rbm28 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14142 RBM28 Zornitza Stark Phenotypes for gene: RBM28 were changed from to Alopecia, neurologic defects, and endocrinopathy syndrome (MIM#612079)
Mendeliome v0.14141 RBM28 Zornitza Stark Publications for gene: RBM28 were set to
Intellectual disability syndromic and non-syndromic v0.4764 RBM28 Zornitza Stark Classified gene: RBM28 as Amber List (moderate evidence)
Intellectual disability syndromic and non-syndromic v0.4764 RBM28 Zornitza Stark Gene: rbm28 has been classified as Amber List (Moderate Evidence).
Intellectual disability syndromic and non-syndromic v0.4763 RBM28 Zornitza Stark edited their review of gene: RBM28: Added comment: PMID 33941690: second family reported, yeast functional studies.; Changed rating: AMBER; Changed publications: 18439547, 33941690
Mendeliome v0.14140 RBM28 Zornitza Stark Mode of inheritance for gene: RBM28 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14139 RBM28 Zornitza Stark Classified gene: RBM28 as Amber List (moderate evidence)
Mendeliome v0.14139 RBM28 Zornitza Stark Gene: rbm28 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14138 RASGRP2 Zornitza Stark Marked gene: RASGRP2 as ready
Mendeliome v0.14138 RASGRP2 Zornitza Stark Gene: rasgrp2 has been classified as Green List (High Evidence).
Mendeliome v0.14138 RASGRP2 Zornitza Stark Phenotypes for gene: RASGRP2 were changed from to Bleeding disorder, platelet-type, 18 (MIM#615888)
Mendeliome v0.14137 RASGRP2 Zornitza Stark Publications for gene: RASGRP2 were set to
Mendeliome v0.14136 RASGRP2 Zornitza Stark Mode of inheritance for gene: RASGRP2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14135 RBM28 Crystle Lee reviewed gene: RBM28: Rating: AMBER; Mode of pathogenicity: None; Publications: 18439547, 33941690, 27077951; Phenotypes: Alopecia, neurologic defects, and endocrinopathy syndrome (MIM#612079); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14135 RASGRP2 Crystle Lee reviewed gene: RASGRP2: Rating: GREEN; Mode of pathogenicity: None; Publications: 28762304, 27663674, 28637664, 27235135; Phenotypes: Bleeding disorder, platelet-type, 18 (MIM#615888); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14135 SCN2A Zornitza Stark Marked gene: SCN2A as ready
Mendeliome v0.14135 SCN2A Zornitza Stark Gene: scn2a has been classified as Green List (High Evidence).
Mendeliome v0.14135 SCN2A Zornitza Stark Publications for gene: SCN2A were set to
Mendeliome v0.14134 SCN2A Zornitza Stark changed review comment from: Classically presents with seizures and DD/ID although a range of other manifestations reported, including movement abnormalities, including ataxia.; to: Classically presents with seizures and DD/ID although a range of other manifestations reported, including movement abnormalities, including ataxia. Rather than being discrete disorders, these probably represent a continuum of manifestations of a single brain channelopathy disorder.

Multiple families reported.
Mendeliome v0.14134 SCN2A Zornitza Stark edited their review of gene: SCN2A: Changed publications: 19786696, 23662938, 15028761, 30185235, 20956790, 24650168, 23935176, 22495306
Mendeliome v0.14134 SCN2A Zornitza Stark Phenotypes for gene: SCN2A were changed from to Episodic ataxia, type 9, MIM# 618924; Seizures, benign familial infantile, 3, MIM# 607745; Developmental and epileptic encephalopathy 11, MIM# 613721
Mendeliome v0.14133 SCN2A Zornitza Stark Mode of inheritance for gene: SCN2A was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14132 SCN2A Zornitza Stark edited their review of gene: SCN2A: Changed phenotypes: Episodic ataxia, type 9, MIM# 618924, Seizures, benign familial infantile, 3, MIM# 607745, Developmental and epileptic encephalopathy 11, MIM# 613721
Mendeliome v0.14132 SCN2A Zornitza Stark Mode of inheritance for gene: SCN2A was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14131 SCN9A Zornitza Stark Marked gene: SCN9A as ready
Mendeliome v0.14131 SCN9A Zornitza Stark Gene: scn9a has been classified as Green List (High Evidence).
Mendeliome v0.14131 SCN9A Zornitza Stark Phenotypes for gene: SCN9A were changed from to Erythermalgia, primary, MIM# 133020; Insensitivity to pain, congenital, MIM# 243000; Neuropathy, hereditary sensory and autonomic, type IID, MIM# 243000; Paroxysmal extreme pain disorder, MIM# 167400; Small fiber neuropathy,MIM# 133020
Mendeliome v0.14130 SCN9A Zornitza Stark Mode of inheritance for gene: SCN9A was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.14129 SLC22A5 Zornitza Stark Marked gene: SLC22A5 as ready
Mendeliome v0.14129 SLC22A5 Zornitza Stark Gene: slc22a5 has been classified as Green List (High Evidence).
Mendeliome v0.14129 SLC22A5 Zornitza Stark Phenotypes for gene: SLC22A5 were changed from to Carnitine deficiency, systemic primary, MIM# 212140, MONDO:0008919
Mendeliome v0.14128 SLC22A5 Zornitza Stark Publications for gene: SLC22A5 were set to
Mendeliome v0.14127 SLC22A5 Zornitza Stark Mode of inheritance for gene: SLC22A5 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14126 SLC22A12 Zornitza Stark Marked gene: SLC22A12 as ready
Mendeliome v0.14126 SLC22A12 Zornitza Stark Gene: slc22a12 has been classified as Green List (High Evidence).
Mendeliome v0.14126 SLC22A12 Zornitza Stark Phenotypes for gene: SLC22A12 were changed from to Hypouricemia, renal, MIM# 220150, MONDO:0020728
Mendeliome v0.14125 SLC22A12 Zornitza Stark Publications for gene: SLC22A12 were set to
Mendeliome v0.14124 SLC22A12 Zornitza Stark Mode of inheritance for gene: SLC22A12 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Genetic Epilepsy v0.1601 SLC1A2 Zornitza Stark Marked gene: SLC1A2 as ready
Genetic Epilepsy v0.1601 SLC1A2 Zornitza Stark Gene: slc1a2 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1601 SLC1A2 Zornitza Stark Publications for gene: SLC1A2 were set to 27476654; 28777935; 30937933; 23934111
Genetic Epilepsy v0.1600 SLC1A2 Zornitza Stark Phenotypes for gene: SLC1A2 were changed from Developmental and epileptic encephalopathy 41, MIM# 617105 to Developmental and epileptic encephalopathy 41, MIM# 617105
Genetic Epilepsy v0.1599 SLC1A2 Zornitza Stark Phenotypes for gene: SLC1A2 were changed from to Developmental and epileptic encephalopathy 41, MIM# 617105
Genetic Epilepsy v0.1598 SLC1A2 Zornitza Stark Publications for gene: SLC1A2 were set to
Genetic Epilepsy v0.1597 SLC1A2 Zornitza Stark Mode of pathogenicity for gene: SLC1A2 was changed from to Other
Genetic Epilepsy v0.1596 SLC1A2 Zornitza Stark Mode of inheritance for gene: SLC1A2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Genetic Epilepsy v0.1595 SLC1A2 Zornitza Stark reviewed gene: SLC1A2: Rating: GREEN; Mode of pathogenicity: Other; Publications: 27476654, 28777935, 30937933, 23934111; Phenotypes: Developmental and epileptic encephalopathy 41, MIM# 617105; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14123 SLC1A2 Zornitza Stark Marked gene: SLC1A2 as ready
Mendeliome v0.14123 SLC1A2 Zornitza Stark Gene: slc1a2 has been classified as Green List (High Evidence).
Mendeliome v0.14123 SLC1A2 Zornitza Stark Phenotypes for gene: SLC1A2 were changed from to Developmental and epileptic encephalopathy 41, MIM# 617105
Mendeliome v0.14122 SLC1A2 Zornitza Stark Publications for gene: SLC1A2 were set to
Mendeliome v0.14121 SLC1A2 Zornitza Stark Mode of pathogenicity for gene: SLC1A2 was changed from to Other
Mendeliome v0.14120 SLC1A2 Zornitza Stark Mode of inheritance for gene: SLC1A2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14119 SLC1A2 Zornitza Stark reviewed gene: SLC1A2: Rating: GREEN; Mode of pathogenicity: Other; Publications: 27476654, 28777935, 30937933, 23934111; Phenotypes: Developmental and epileptic encephalopathy 41, MIM# 617105; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Miscellaneous Metabolic Disorders v1.20 SLC1A1 Zornitza Stark Marked gene: SLC1A1 as ready
Miscellaneous Metabolic Disorders v1.20 SLC1A1 Zornitza Stark Gene: slc1a1 has been classified as Amber List (Moderate Evidence).
Miscellaneous Metabolic Disorders v1.20 SLC1A1 Zornitza Stark Classified gene: SLC1A1 as Amber List (moderate evidence)
Miscellaneous Metabolic Disorders v1.20 SLC1A1 Zornitza Stark Gene: slc1a1 has been classified as Amber List (Moderate Evidence).
Miscellaneous Metabolic Disorders v1.19 SLC1A1 Zornitza Stark gene: SLC1A1 was added
gene: SLC1A1 was added to Miscellaneous Metabolic Disorders. Sources: Expert Review
Mode of inheritance for gene: SLC1A1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: SLC1A1 were set to 21123949
Phenotypes for gene: SLC1A1 were set to Dicarboxylic aminoaciduria, MIM#222730
Review for gene: SLC1A1 was set to AMBER
Added comment: Only two families reported and mouse KO. Rated as LIMITED by ClinGen.
Sources: Expert Review
Intellectual disability syndromic and non-syndromic v0.4763 SLC1A1 Zornitza Stark changed review comment from: ID is part of the phenotype of this metabolic disorder.; to: ID is part of the phenotype of this metabolic disorder. However, only two families reported and rated as LIMITED by ClinGen.
Intellectual disability syndromic and non-syndromic v0.4763 SLC1A1 Zornitza Stark edited their review of gene: SLC1A1: Changed rating: AMBER; Changed publications: 21123949
Mendeliome v0.14119 SLC1A1 Zornitza Stark Marked gene: SLC1A1 as ready
Mendeliome v0.14119 SLC1A1 Zornitza Stark Gene: slc1a1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14119 SLC1A1 Zornitza Stark Phenotypes for gene: SLC1A1 were changed from to Dicarboxylic aminoaciduria, MIM# 222730
Mendeliome v0.14118 SLC1A1 Zornitza Stark Publications for gene: SLC1A1 were set to
Mendeliome v0.14117 SLC1A1 Zornitza Stark Mode of inheritance for gene: SLC1A1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14116 SLC1A1 Zornitza Stark Classified gene: SLC1A1 as Amber List (moderate evidence)
Mendeliome v0.14116 SLC1A1 Zornitza Stark Gene: slc1a1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14115 SLC1A1 Zornitza Stark reviewed gene: SLC1A1: Rating: AMBER; Mode of pathogenicity: None; Publications: 21123949; Phenotypes: Dicarboxylic aminoaciduria, MIM# 222730; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14115 SLC19A3 Zornitza Stark Marked gene: SLC19A3 as ready
Mendeliome v0.14115 SLC19A3 Zornitza Stark Gene: slc19a3 has been classified as Green List (High Evidence).
Mendeliome v0.14115 SLC19A3 Zornitza Stark Phenotypes for gene: SLC19A3 were changed from to Thiamine metabolism dysfunction syndrome 2 (biotin- or thiamine-responsive encephalopathy type 2), MIM# 607483
Mendeliome v0.14114 SLC19A3 Zornitza Stark Publications for gene: SLC19A3 were set to
Mendeliome v0.14113 SLC19A3 Zornitza Stark Mode of inheritance for gene: SLC19A3 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14112 SLC19A3 Zornitza Stark reviewed gene: SLC19A3: Rating: GREEN; Mode of pathogenicity: None; Publications: 15871139, 20065143, 23482991, 24878502, 23589815, 24166474, 26975589, 27896110; Phenotypes: Thiamine metabolism dysfunction syndrome 2 (biotin- or thiamine-responsive encephalopathy type 2), MIM# 607483; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14112 SLC17A8 Zornitza Stark Marked gene: SLC17A8 as ready
Mendeliome v0.14112 SLC17A8 Zornitza Stark Gene: slc17a8 has been classified as Green List (High Evidence).
Mendeliome v0.14112 SLC17A8 Zornitza Stark Phenotypes for gene: SLC17A8 were changed from to Deafness, autosomal dominant 25, MIM# 605583
Mendeliome v0.14111 SLC17A8 Zornitza Stark Publications for gene: SLC17A8 were set to
Mendeliome v0.14110 SLC17A8 Zornitza Stark Mode of inheritance for gene: SLC17A8 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14109 SLC17A8 Zornitza Stark reviewed gene: SLC17A8: Rating: GREEN; Mode of pathogenicity: None; Publications: 18674745, 26797701, 28647561; Phenotypes: Deafness, autosomal dominant 25, MIM# 605583; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14109 SLC17A3 Zornitza Stark Marked gene: SLC17A3 as ready
Mendeliome v0.14109 SLC17A3 Zornitza Stark Gene: slc17a3 has been classified as Red List (Low Evidence).
Mendeliome v0.14109 SLC17A3 Zornitza Stark Phenotypes for gene: SLC17A3 were changed from to [Uric acid concentration, serum, QTL4], MIM# 612671, {Gout susceptibility 4}, MIM#612671
Mendeliome v0.14108 SLC17A3 Zornitza Stark Publications for gene: SLC17A3 were set to
Mendeliome v0.14107 SLC17A3 Zornitza Stark Mode of inheritance for gene: SLC17A3 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14106 SLC17A3 Zornitza Stark Classified gene: SLC17A3 as Red List (low evidence)
Mendeliome v0.14106 SLC17A3 Zornitza Stark Gene: slc17a3 has been classified as Red List (Low Evidence).
Miscellaneous Metabolic Disorders v1.18 SLC16A1 Zornitza Stark Marked gene: SLC16A1 as ready
Miscellaneous Metabolic Disorders v1.18 SLC16A1 Zornitza Stark Gene: slc16a1 has been classified as Green List (High Evidence).
Miscellaneous Metabolic Disorders v1.18 SLC16A1 Zornitza Stark Classified gene: SLC16A1 as Green List (high evidence)
Miscellaneous Metabolic Disorders v1.18 SLC16A1 Zornitza Stark Gene: slc16a1 has been classified as Green List (High Evidence).
Miscellaneous Metabolic Disorders v1.17 SLC16A1 Zornitza Stark gene: SLC16A1 was added
gene: SLC16A1 was added to Miscellaneous Metabolic Disorders. Sources: Expert Review
Mode of inheritance for gene: SLC16A1 was set to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Publications for gene: SLC16A1 were set to 25390740
Phenotypes for gene: SLC16A1 were set to Monocarboxylate transporter 1 deficiency, MIM# 616095
Review for gene: SLC16A1 was set to GREEN
Added comment: 3 individuals with bi-allelic and 5 with mono-allelic variants reported. Individuals with bi-allelic variants had more severe presentation, including mild ID but unclear if this is primary or secondary to episodes of ketoacidosis.

All patients presented with bouts of ketoacidosis provoked by fasting or infections in the first years of life. Ketoacidotic episodes were preceded by poor feeding and vomiting and were associated with dehydration, which was a consequence of osmotic diuresis and vomiting. In all patients, treatment with intravenous glucose or dextrose, combined with bicarbonate, led to rapid clearance of metabolic acidosis. Early initiation of treatment appeared to prevent ketoacidosis, and ensuring adequate caloric intake reduced the number of episodes. The frequency of ketoacidotic episodes appeared to decrease over time, and none of the patients had documented ketoacidosis after 7 years of age, although some patients had marked ketonuria associated with mild infections.
Sources: Expert Review
Mendeliome v0.14105 SLC16A1 Zornitza Stark Marked gene: SLC16A1 as ready
Mendeliome v0.14105 SLC16A1 Zornitza Stark Gene: slc16a1 has been classified as Green List (High Evidence).
Mendeliome v0.14105 SLC16A1 Zornitza Stark Phenotypes for gene: SLC16A1 were changed from to Erythrocyte lactate transporter defect, MIM# 245340; Hyperinsulinemic hypoglycaemia, familial, 7, MIM# 610021; Monocarboxylate transporter 1 deficiency, MIM# 616095
Mendeliome v0.14104 SLC16A1 Zornitza Stark Publications for gene: SLC16A1 were set to
Mendeliome v0.14103 SLC16A1 Zornitza Stark Mode of inheritance for gene: SLC16A1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.14102 SLC16A1 Zornitza Stark reviewed gene: SLC16A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 25390740, 32170320; Phenotypes: Erythrocyte lactate transporter defect, MIM# 245340, Hyperinsulinemic hypoglycaemia, familial, 7, MIM# 610021, Monocarboxylate transporter 1 deficiency, MIM# 616095; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.14102 SLC11A2 Zornitza Stark Marked gene: SLC11A2 as ready
Mendeliome v0.14102 SLC11A2 Zornitza Stark Gene: slc11a2 has been classified as Green List (High Evidence).
Mendeliome v0.14102 SLC11A2 Zornitza Stark Phenotypes for gene: SLC11A2 were changed from to Anaemia, hypochromic microcytic, with iron overload 1 MIM#206100
Mendeliome v0.14101 SLC11A2 Zornitza Stark Publications for gene: SLC11A2 were set to
Mendeliome v0.14100 SLC11A2 Zornitza Stark Mode of inheritance for gene: SLC11A2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14099 SH2D1A Zornitza Stark Marked gene: SH2D1A as ready
Mendeliome v0.14099 SH2D1A Zornitza Stark Gene: sh2d1a has been classified as Green List (High Evidence).
Mendeliome v0.14099 SH2D1A Zornitza Stark Phenotypes for gene: SH2D1A were changed from to Lymphoproliferative syndrome, X-linked, 1, MIM# 308240
Mendeliome v0.14098 SH2D1A Zornitza Stark Publications for gene: SH2D1A were set to
Mendeliome v0.14097 SH2D1A Zornitza Stark Mode of inheritance for gene: SH2D1A was changed from Unknown to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.14096 SH2D1A Zornitza Stark reviewed gene: SH2D1A: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Lymphoproliferative syndrome, X-linked, 1, MIM# 308240; Mode of inheritance: X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.14096 SGCG Zornitza Stark Marked gene: SGCG as ready
Mendeliome v0.14096 SGCG Zornitza Stark Gene: sgcg has been classified as Green List (High Evidence).
Mendeliome v0.14096 SGCG Zornitza Stark Phenotypes for gene: SGCG were changed from to Muscular dystrophy, limb-girdle, autosomal recessive 5 MIM#253700; autosomal recessive limb-girdle muscular dystrophy MONDO:0015152
Mendeliome v0.14095 SGCG Zornitza Stark Publications for gene: SGCG were set to
Mendeliome v0.14094 SGCG Zornitza Stark Mode of inheritance for gene: SGCG was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14093 FMR1 Bryony Thompson Publications for gene: FMR1 were set to
Mendeliome v0.14092 FLVCR1 Bryony Thompson Marked gene: FLVCR1 as ready
Mendeliome v0.14092 FLVCR1 Bryony Thompson Gene: flvcr1 has been classified as Green List (High Evidence).
Mendeliome v0.14092 FLVCR1 Bryony Thompson Phenotypes for gene: FLVCR1 were changed from to posterior column ataxia-retinitis pigmentosa syndrome MONDO:0012177
Mendeliome v0.14091 FLNC Bryony Thompson Marked gene: FLNC as ready
Mendeliome v0.14091 FLNC Bryony Thompson Gene: flnc has been classified as Green List (High Evidence).
Mendeliome v0.14091 FMR1 Bryony Thompson Mode of inheritance for gene: FMR1 was changed from Unknown to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Mendeliome v0.14090 FMR1 Bryony Thompson reviewed gene: FMR1: Rating: GREEN; Mode of pathogenicity: None; Publications: 8156595, 28176767, 29178241; Phenotypes: Fragile X syndrome MONDO:0010383; Mode of inheritance: X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Mendeliome v0.14090 FLVCR1 Bryony Thompson Publications for gene: FLVCR1 were set to
Mendeliome v0.14089 FLVCR1 Bryony Thompson Mode of inheritance for gene: FLVCR1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14088 FLNC Bryony Thompson Phenotypes for gene: FLNC were changed from to Myofibrillar myopathy MONDO:0018943; Dilated cardiomyopathy MONDO:0005021; distal myopathy with posterior leg and anterior hand involvement MONDO:0013550
Mendeliome v0.14087 FLVCR1 Bryony Thompson edited their review of gene: FLVCR1: Added comment: At least 5 unrelated families reported with visual impairment and ataxia. Onset is usually in childhood.; Changed publications: 21070897, 22279524, 21267618; Changed phenotypes: posterior column ataxia-retinitis pigmentosa syndrome MONDO:0012177; Set current diagnostic: yes
Mendeliome v0.14087 FLVCR1 Bryony Thompson Deleted their comment
Mendeliome v0.14087 FLNC Bryony Thompson Publications for gene: FLNC were set to
Mendeliome v0.14086 FLNC Bryony Thompson Mode of inheritance for gene: FLNC was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14085 FLNC Bryony Thompson reviewed gene: FLNC: Rating: GREEN; Mode of pathogenicity: None; Publications: 15929027, 32112656; Phenotypes: Myofibrillar myopathy MONDO:0018943, Dilated cardiomyopathy MONDO:0005021, distal myopathy with posterior leg and anterior hand involvement MONDO:0013550; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.14085 FLNB Bryony Thompson edited their review of gene: FLNB: Changed phenotypes: spondylocarpotarsal synostosis syndrome MONDO:0010094, filamin-related bone disorder MONDO:0019690
Mendeliome v0.14085 FLNB Bryony Thompson edited their review of gene: FLNB: Changed phenotypes: filamin-related bone disorder MONDO:0019690
Mendeliome v0.14085 FLNB Bryony Thompson Phenotypes for gene: FLNB were changed from spondylocarpotarsal synostosis syndrome MONDO:0010094; osteochondrodysplasia MONDO:0005516 to spondylocarpotarsal synostosis syndrome MONDO:0010094; filamin-related bone disorder MONDO:0019690
Mendeliome v0.14084 FLNB Bryony Thompson Marked gene: FLNB as ready
Mendeliome v0.14084 FLNB Bryony Thompson Gene: flnb has been classified as Green List (High Evidence).
Mendeliome v0.14084 FLNB Bryony Thompson Phenotypes for gene: FLNB were changed from to spondylocarpotarsal synostosis syndrome MONDO:0010094; osteochondrodysplasia MONDO:0005516
Mendeliome v0.14083 FLNB Bryony Thompson Publications for gene: FLNB were set to
Mendeliome v0.14082 FLNB Bryony Thompson Mode of inheritance for gene: FLNB was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.14081 FLNB Bryony Thompson reviewed gene: FLNB: Rating: GREEN; Mode of pathogenicity: None; Publications: 14991055, 17360453, 20301736, 29566257, 16801345, 22190451; Phenotypes: spondylocarpotarsal synostosis syndrome MONDO:0010094, osteochondrodysplasia MONDO:0005516; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.14081 FLI1 Bryony Thompson Marked gene: FLI1 as ready
Mendeliome v0.14081 FLI1 Bryony Thompson Gene: fli1 has been classified as Green List (High Evidence).
Mendeliome v0.14081 FLI1 Bryony Thompson Phenotypes for gene: FLI1 were changed from to Bleeding disorder, platelet-type, 21 MONDO:0054577
Mendeliome v0.14080 FLI1 Bryony Thompson Publications for gene: FLI1 were set to
Mendeliome v0.14079 FLI1 Bryony Thompson Mode of inheritance for gene: FLI1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14078 FLI1 Bryony Thompson reviewed gene: FLI1: Rating: GREEN; Mode of pathogenicity: None; Publications: 10891501, 10981960, 24100448, 28255014, 26316623; Phenotypes: Bleeding disorder, platelet-type, 21 MONDO:0054577; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Fetal anomalies v1.25 ODC1 Lucy Spencer gene: ODC1 was added
gene: ODC1 was added to Fetal anomalies. Sources: Literature
Mode of inheritance for gene: ODC1 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: ODC1 were set to 30475435; 30239107
Phenotypes for gene: ODC1 were set to Bachmann-Bupp syndrome (MIM#619075)
Review for gene: ODC1 was set to GREEN
Added comment: Polyhydraminos are a common prenatal finding in individuals with ODC1 variants. Malformations of cortical development and intracranial calcification have also been reported.
Sources: Literature
Mendeliome v0.14078 FKTN Bryony Thompson Tag deep intronic tag was added to gene: FKTN.
Mendeliome v0.14078 FLG Bryony Thompson Marked gene: FLG as ready
Mendeliome v0.14078 FLG Bryony Thompson Gene: flg has been classified as Green List (High Evidence).
Mendeliome v0.14078 ASS1 Elena Savva Marked gene: ASS1 as ready
Mendeliome v0.14078 ASS1 Elena Savva Gene: ass1 has been classified as Green List (High Evidence).
Mendeliome v0.14078 FLG Bryony Thompson Phenotypes for gene: FLG were changed from to Ichthyosis vulgaris MONDO:0024304
Mendeliome v0.14077 FLG Bryony Thompson Publications for gene: FLG were set to
Mendeliome v0.14076 FLG Bryony Thompson Mode of inheritance for gene: FLG was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.14075 ASS1 Elena Savva Phenotypes for gene: ASS1 were changed from to Citrullinemia MIM#215700; Urea cycle disorders and inherited hyperammonaemias; disorder of amino acid metabolism
Mendeliome v0.14074 ASTN1 Elena Savva Marked gene: ASTN1 as ready
Mendeliome v0.14074 ASTN1 Elena Savva Gene: astn1 has been classified as Green List (High Evidence).
Mendeliome v0.14074 ASS1 Elena Savva Publications for gene: ASS1 were set to
Mendeliome v0.14074 ASS1 Elena Savva Mode of inheritance for gene: ASS1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14073 ASTN1 Elena Savva Phenotypes for gene: ASTN1 were changed from to Polymicrogyria; hypoplastic corpus callosum
Mendeliome v0.14072 FLG Bryony Thompson reviewed gene: FLG: Rating: GREEN; Mode of pathogenicity: None; Publications: 16444271, 19349982, 34608691; Phenotypes: Ichthyosis vulgaris MONDO:0024304; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.14072 ASTN1 Elena Savva Publications for gene: ASTN1 were set to 29706646; 27431290; 26539891
Mendeliome v0.14072 ASTN1 Elena Savva Publications for gene: ASTN1 were set to
Mendeliome v0.14072 ASTN1 Elena Savva Mode of inheritance for gene: ASTN1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Heterotaxy v1.18 ARL2BP Elena Savva Classified gene: ARL2BP as Amber List (moderate evidence)
Heterotaxy v1.18 ARL2BP Elena Savva Gene: arl2bp has been classified as Amber List (Moderate Evidence).
Heterotaxy v1.17 ARL2BP Elena Savva Classified gene: ARL2BP as Amber List (moderate evidence)
Heterotaxy v1.17 ARL2BP Elena Savva Gene: arl2bp has been classified as Amber List (Moderate Evidence).
Heterotaxy v1.17 ARL2BP Elena Savva Classified gene: ARL2BP as Amber List (moderate evidence)
Heterotaxy v1.17 ARL2BP Elena Savva Gene: arl2bp has been classified as Amber List (Moderate Evidence).
Heterotaxy v1.16 ARL2BP Elena Savva Marked gene: ARL2BP as ready
Heterotaxy v1.16 ARL2BP Elena Savva Gene: arl2bp has been classified as Red List (Low Evidence).
Heterotaxy v1.16 ARL2BP Elena Savva gene: ARL2BP was added
gene: ARL2BP was added to Heterotaxy. Sources: Literature
Mode of inheritance for gene: ARL2BP was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: ARL2BP were set to PMID: 23849777
Phenotypes for gene: ARL2BP were set to Retinitis pigmentosa with or without situs inversus MIM#615434
Review for gene: ARL2BP was set to AMBER
Added comment: PMID: 23849777 - Two families with retinitis pigmentosa and situs inversus, with a homozygous missense or canonical splice variant. Missense variant shown to affect ARL2 binding, RT-PCR of patient blood proved the splice variant to result in multiple transcripts but all resulting in a fs and PTC.
Sources: Literature
Mendeliome v0.14071 ASB10 Elena Savva Phenotypes for gene: ASB10 were changed from Glaucoma 1, open angle, F MIM#603383 to Glaucoma 1, open angle, F MIM#603383
Mendeliome v0.14070 FKTN Bryony Thompson Marked gene: FKTN as ready
Mendeliome v0.14070 FKTN Bryony Thompson Gene: fktn has been classified as Green List (High Evidence).
Mendeliome v0.14070 FKTN Bryony Thompson Phenotypes for gene: FKTN were changed from to Muscular dystrophy-dystroglycanopathy MONDO:0018276
Mendeliome v0.14069 FKTN Bryony Thompson Publications for gene: FKTN were set to
Mendeliome v0.14068 FKTN Bryony Thompson Mode of inheritance for gene: FKTN was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14067 FKTN Bryony Thompson reviewed gene: FKTN: Rating: GREEN; Mode of pathogenicity: None; Publications: 9690476, 19017726, 20301385, 28680109; Phenotypes: Muscular dystrophy-dystroglycanopathy MONDO:0018276; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.14067 GSN Zornitza Stark Marked gene: GSN as ready
Mendeliome v0.14067 GSN Zornitza Stark Gene: gsn has been classified as Green List (High Evidence).
Mendeliome v0.14067 GSN Zornitza Stark Phenotypes for gene: GSN were changed from to Amyloidosis, Finnish type, MIM# 105120
Mendeliome v0.14066 GSN Zornitza Stark Publications for gene: GSN were set to
Mendeliome v0.14065 GSN Zornitza Stark Mode of inheritance for gene: GSN was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.14064 GSN Zornitza Stark changed review comment from: The Finnish type of systemic amyloidosis is characterized clinically by a unique constellation of features including lattice corneal dystrophy, and cranial neuropathy, bulbar signs, and skin changes. Some patients may develop peripheral neuropathy and renal failure. The disorder is usually inherited in an autosomal dominant pattern; however, homozygotes with a more severe phenotype have also been reported.

Multiple families with same founder variant.; to: The Finnish type of systemic amyloidosis is characterized clinically by a unique constellation of features including lattice corneal dystrophy, and cranial neuropathy, bulbar signs, and skin changes. Some patients may develop peripheral neuropathy and renal failure. The disorder is usually inherited in an autosomal dominant pattern; however, homozygotes with a more severe phenotype have also been reported.

Multiple families with same founder variant, p.Asp187Asn, though other variants also reported.
Mendeliome v0.14064 GSN Zornitza Stark edited their review of gene: GSN: Changed publications: 2176164, 28139293
Mendeliome v0.14064 GSN Zornitza Stark reviewed gene: GSN: Rating: GREEN; Mode of pathogenicity: None; Publications: 2176164; Phenotypes: Amyloidosis, Finnish type, MIM# 105120; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.14064 GSS Zornitza Stark Marked gene: GSS as ready
Mendeliome v0.14064 GSS Zornitza Stark Gene: gss has been classified as Green List (High Evidence).
Mendeliome v0.14064 GSS Zornitza Stark Phenotypes for gene: GSS were changed from to Glutathione synthetase deficiency MIM#266130; Hemolytic anemia due to glutathione synthetase deficiency MIM#231900; Disorders of the gamma-glutamyl cycle
Mendeliome v0.14063 GSS Zornitza Stark Publications for gene: GSS were set to
Mendeliome v0.14062 GSS Zornitza Stark Mode of inheritance for gene: GSS was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14061 GSS Zornitza Stark reviewed gene: GSS: Rating: GREEN; Mode of pathogenicity: None; Publications: 9215686; Phenotypes: Glutathione synthetase deficiency, MIM# 266130, Haemolytic anemia due to glutathione synthetase deficiency 231900; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4763 GTF3C3 Zornitza Stark Phenotypes for gene: GTF3C3 were changed from Global developmental delay; Intellectual disability; Seizures to Neurodevelopmental disorder MONDO:0700092, GTF3C3-related
Intellectual disability syndromic and non-syndromic v0.4762 GTF3C3 Zornitza Stark edited their review of gene: GTF3C3: Changed phenotypes: Neurodevelopmental disorder MONDO:0700092, GTF3C3-related
Mendeliome v0.14061 GTF3C3 Zornitza Stark Marked gene: GTF3C3 as ready
Mendeliome v0.14061 GTF3C3 Zornitza Stark Gene: gtf3c3 has been classified as Green List (High Evidence).
Mendeliome v0.14061 GTF3C3 Zornitza Stark Phenotypes for gene: GTF3C3 were changed from to Neurodevelopmental disorder MONDO:0700092, GTF3C3-related
Mendeliome v0.14060 GTF3C3 Zornitza Stark Publications for gene: GTF3C3 were set to
Mendeliome v0.14059 GTF3C3 Zornitza Stark Mode of inheritance for gene: GTF3C3 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14058 GTF3C3 Zornitza Stark reviewed gene: GTF3C3: Rating: GREEN; Mode of pathogenicity: None; Publications: 28940097, 28097321, 30552426; Phenotypes: Neurodevelopmental disorder MONDO:0700092, GTF3C3-related; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Cone-rod Dystrophy v0.47 GUCA1A Zornitza Stark Marked gene: GUCA1A as ready
Cone-rod Dystrophy v0.47 GUCA1A Zornitza Stark Gene: guca1a has been classified as Green List (High Evidence).
Cone-rod Dystrophy v0.47 GUCA1A Zornitza Stark Phenotypes for gene: GUCA1A were changed from Cone dystrophy-3, 602093 to Cone dystrophy-3, MIM# 602093; Cone-rod dystrophy 14, MIM# 602093
Cone-rod Dystrophy v0.46 GUCA1A Zornitza Stark Publications for gene: GUCA1A were set to 30679166
Cone-rod Dystrophy v0.45 GUCA1A Zornitza Stark Mode of inheritance for gene: GUCA1A was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Cone-rod Dystrophy v0.44 GUCA1A Zornitza Stark reviewed gene: GUCA1A: Rating: GREEN; Mode of pathogenicity: None; Publications: 9425234, 15953638, 11146732, 28125083; Phenotypes: Cone dystrophy-3, MIM# 602093, Cone-rod dystrophy 14, MIM# 602093; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14058 GUCA1A Zornitza Stark Marked gene: GUCA1A as ready
Mendeliome v0.14058 GUCA1A Zornitza Stark Gene: guca1a has been classified as Green List (High Evidence).
Mendeliome v0.14058 GUCA1A Zornitza Stark Phenotypes for gene: GUCA1A were changed from to Cone dystrophy-3, MIM# 602093; Cone-rod dystrophy 14, MIM# 602093
Mendeliome v0.14057 GUCA1A Zornitza Stark Publications for gene: GUCA1A were set to
Mendeliome v0.14056 GUCA1A Zornitza Stark Mode of inheritance for gene: GUCA1A was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14055 GUCA1A Zornitza Stark reviewed gene: GUCA1A: Rating: GREEN; Mode of pathogenicity: None; Publications: 9425234, 15953638, 11146732, 28125083; Phenotypes: Cone dystrophy-3, MIM# 602093, Cone-rod dystrophy 14, MIM# 602093; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14055 ASB10 Elena Savva Publications for gene: ASB10 were set to PMID: 26713451; 22156576
Mendeliome v0.14055 ASB10 Elena Savva Mode of inheritance for gene: ASB10 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14054 ASB10 Elena Savva Publications for gene: ASB10 were set to
Mendeliome v0.14054 ASB10 Elena Savva Mode of inheritance for gene: ASB10 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14055 ASB10 Elena Savva Phenotypes for gene: ASB10 were changed from to Glaucoma 1, open angle, F MIM#603383
Mendeliome v0.14054 ASB10 Elena Savva Marked gene: ASB10 as ready
Mendeliome v0.14054 ASB10 Elena Savva Gene: asb10 has been classified as Red List (Low Evidence).
Mendeliome v0.14054 ASB10 Elena Savva Classified gene: ASB10 as Red List (low evidence)
Mendeliome v0.14054 ASB10 Elena Savva Gene: asb10 has been classified as Red List (Low Evidence).
Mendeliome v0.14053 ASB10 Elena Savva reviewed gene: ASB10: Rating: RED; Mode of pathogenicity: None; Publications: PMID: 26713451, 22156576; Phenotypes: Glaucoma 1, open angle, F MIM#603383; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14053 FKRP Bryony Thompson Marked gene: FKRP as ready
Mendeliome v0.14053 FKRP Bryony Thompson Gene: fkrp has been classified as Green List (High Evidence).
Mendeliome v0.14053 FKRP Bryony Thompson Phenotypes for gene: FKRP were changed from to Muscular dystrophy-dystroglycanopathy MONDO:0018276
Mendeliome v0.14052 FKRP Bryony Thompson Publications for gene: FKRP were set to
Mendeliome v0.14051 FKRP Bryony Thompson Mode of inheritance for gene: FKRP was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14050 ART4 Elena Savva Phenotypes for gene: ART4 were changed from {Macular degeneration, age-related, 8} MIM#613778 to {Macular degeneration, age-related, 8} MIM#613778
Mendeliome v0.14050 ART4 Elena Savva Mode of inheritance for gene: ART4 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14049 FKRP Bryony Thompson reviewed gene: FKRP: Rating: GREEN; Mode of pathogenicity: None; Publications: 11592034, 11741828, 14647208, 19299310, 19155270; Phenotypes: Muscular dystrophy-dystroglycanopathy MONDO:0018276; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.14049 ART4 Elena Savva Phenotypes for gene: ART4 were changed from to {Macular degeneration, age-related, 8} MIM#613778
Mendeliome v0.14048 ART4 Elena Savva Mode of inheritance for gene: ART4 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14048 ART4 Elena Savva Marked gene: ART4 as ready
Mendeliome v0.14048 ART4 Elena Savva Gene: art4 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14048 ART4 Elena Savva Publications for gene: ART4 were set to
Mendeliome v0.14048 ART4 Elena Savva Classified gene: ART4 as Amber List (moderate evidence)
Mendeliome v0.14048 ART4 Elena Savva Gene: art4 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14047 ART4 Elena Savva reviewed gene: ART4: Rating: AMBER; Mode of pathogenicity: None; Publications: PMID: 33675039, 33206405; Phenotypes: {Macular degeneration, age-related, 8} MIM#613778; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14047 FHL1 Bryony Thompson Marked gene: FHL1 as ready
Mendeliome v0.14047 FHL1 Bryony Thompson Gene: fhl1 has been classified as Green List (High Evidence).
Mendeliome v0.14047 FHL1 Bryony Thompson Phenotypes for gene: FHL1 were changed from to Reducing body myopathy MONDO:0019948; X-linked Emery-Dreifuss muscular dystrophy MONDO:0010680
Mendeliome v0.14046 ASPA Elena Savva Phenotypes for gene: ASPA were changed from to Canavan disease MIM#271900; disorder of amino acid metabolism
Mendeliome v0.14045 ASPA Elena Savva Marked gene: ASPA as ready
Mendeliome v0.14045 ASPA Elena Savva Gene: aspa has been classified as Green List (High Evidence).
Mendeliome v0.14045 ASPA Elena Savva Publications for gene: ASPA were set to
Mendeliome v0.14045 ASPA Elena Savva Mode of inheritance for gene: ASPA was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14044 ASPA Elena Savva reviewed gene: ASPA: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Canavan disease MIM#271900; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14044 ARMS2 Elena Savva Phenotypes for gene: ARMS2 were changed from {Macular degeneration, age-related, 8} MIM#613778 to {Macular degeneration, age-related, 8} MIM#613778
Mendeliome v0.14043 FHL1 Bryony Thompson Publications for gene: FHL1 were set to
Mendeliome v0.14042 FHL1 Bryony Thompson Mode of inheritance for gene: FHL1 was changed from Unknown to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Mendeliome v0.14041 ASH1L Elena Savva Phenotypes for gene: ASH1L were changed from Mental retardation, autosomal dominant 52, MIM#617796 to Mental retardation, autosomal dominant 52, MIM#617796
Mendeliome v0.14041 ASH1L Elena Savva Publications for gene: ASH1L were set to 23033978; 25961944; 28394464; 28191889; 27824329
Mendeliome v0.14040 ARMS2 Elena Savva Phenotypes for gene: ARMS2 were changed from to {Macular degeneration, age-related, 8} MIM#613778
Mendeliome v0.14040 ARMS2 Elena Savva Classified gene: ARMS2 as Red List (low evidence)
Mendeliome v0.14040 ARMS2 Elena Savva Gene: arms2 has been classified as Red List (Low Evidence).
Mendeliome v0.14039 ARMS2 Elena Savva Marked gene: ARMS2 as ready
Mendeliome v0.14039 ARMS2 Elena Savva Gene: arms2 has been classified as Green List (High Evidence).
Mendeliome v0.14039 FHL1 Bryony Thompson reviewed gene: FHL1: Rating: GREEN; Mode of pathogenicity: None; Publications: 19716112, 20186852, 20301609, 18179901, 25274776, 34366191, 18274675, 19181672; Phenotypes: Reducing body myopathy MONDO:0019948, X-linked Emery-Dreifuss muscular dystrophy MONDO:0010680; Mode of inheritance: X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males); Current diagnostic: yes
Mendeliome v0.14039 ASH1L Elena Savva Phenotypes for gene: ASH1L were changed from to Mental retardation, autosomal dominant 52, MIM#617796
Mendeliome v0.14038 ASH1L Elena Savva Publications for gene: ASH1L were set to
Mendeliome v0.14038 ASH1L Elena Savva Marked gene: ASH1L as ready
Mendeliome v0.14038 ASH1L Elena Savva Gene: ash1l has been classified as Green List (High Evidence).
Mendeliome v0.14038 ASH1L Elena Savva Mode of inheritance for gene: ASH1L was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14037 ARMS2 Elena Savva reviewed gene: ARMS2: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: {Macular degeneration, age-related, 8} MIM#613778; Mode of inheritance: Unknown
Mendeliome v0.14037 ARL2BP Elena Savva Publications for gene: ARL2BP were set to PMID: 23849777; 27790702; 29718757
Mendeliome v0.14036 ARL2BP Elena Savva Publications for gene: ARL2BP were set to
Mendeliome v0.14035 ARL2BP Elena Savva Marked gene: ARL2BP as ready
Mendeliome v0.14035 ARL2BP Elena Savva Gene: arl2bp has been classified as Green List (High Evidence).
Mendeliome v0.14035 ARL2BP Elena Savva Phenotypes for gene: ARL2BP were changed from to Retinitis pigmentosa with or without situs inversus MIM#615434
Mendeliome v0.14035 ARL2BP Elena Savva Mode of inheritance for gene: ARL2BP was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14034 ARL2BP Elena Savva reviewed gene: ARL2BP: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Retinitis pigmentosa with or without situs inversus MIM#615434; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14034 FH Bryony Thompson Marked gene: FH as ready
Mendeliome v0.14034 FH Bryony Thompson Gene: fh has been classified as Green List (High Evidence).
Mendeliome v0.14034 FH Bryony Thompson Phenotypes for gene: FH were changed from to hereditary leiomyomatosis and renal cell cancer MONDO:0007888; fumaric aciduria MONDO:0011730
Mendeliome v0.14033 FH Bryony Thompson Publications for gene: FH were set to
Mendeliome v0.14032 FH Bryony Thompson Mode of inheritance for gene: FH was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.14031 FH Bryony Thompson changed review comment from: Well established gene-disease associations. Loss of function is the mechanism of disease. Monoallelic variants associated with decreased fumarate hydratase enzyme activity cause FH tumour predisposition syndrome (also known as HLRCC; PMID: 11865300, 28300276). FH deficiency (also known as fumarase deficiency or fumaric aciduria) caused by biallelic variants results in severe neonatal and early infantile encephalopathy (PMID: 8200987, 20549362, 31746132). FH encodes for both mitochondrial and cytosolic FH enzyme isoforms, which catalyze hydration of fumarate to malate.; to: Well established gene-disease associations. Loss of function is the mechanism of disease. Monoallelic variants associated with decreased fumarate hydratase enzyme activity cause FH tumour predisposition syndrome (also known as HLRCC; PMID: 11865300, 28300276, 20301430). FH deficiency (also known as fumarase deficiency or fumaric aciduria) caused by biallelic variants results in severe neonatal and early infantile encephalopathy (PMID: 8200987, 20549362, 31746132, 20301679). FH encodes for both mitochondrial and cytosolic FH enzyme isoforms, which catalyze hydration of fumarate to malate.
Mendeliome v0.14031 FH Bryony Thompson edited their review of gene: FH: Changed publications: 11865300, 28300276, 20301430, 8200987, 20549362, 31746132, 20301679
Mendeliome v0.14031 FH Bryony Thompson reviewed gene: FH: Rating: GREEN; Mode of pathogenicity: None; Publications: 11865300, 28300276, 8200987, 20549362, 31746132; Phenotypes: hereditary leiomyomatosis and renal cell cancer MONDO:0007888, fumaric aciduria MONDO:0011730; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.14031 ARID1B Elena Savva Phenotypes for gene: ARID1B were changed from to Coffin-Siris syndrome 1 MIM#135900
Mendeliome v0.14030 ARID1B Elena Savva Marked gene: ARID1B as ready
Mendeliome v0.14030 ARID1B Elena Savva Gene: arid1b has been classified as Green List (High Evidence).
Mendeliome v0.14030 ARID1B Elena Savva Mode of inheritance for gene: ARID1B was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14029 ARID1B Elena Savva reviewed gene: ARID1B: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Coffin-Siris syndrome 1 MIM#135900; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14029 FGG Bryony Thompson Marked gene: FGG as ready
Mendeliome v0.14029 FGG Bryony Thompson Gene: fgg has been classified as Green List (High Evidence).
Mendeliome v0.14029 FGG Bryony Thompson Phenotypes for gene: FGG were changed from to congenital fibrinogen deficiency MONDO:0018060
Mendeliome v0.14028 FGG Bryony Thompson Publications for gene: FGG were set to
Mendeliome v0.14027 ARHGDIA Elena Savva Phenotypes for gene: ARHGDIA were changed from Nephrotic syndrome, type 8 MIM#615244 to Nephrotic syndrome, type 8 MIM#615244
Mendeliome v0.14026 ARHGDIA Elena Savva Publications for gene: ARHGDIA were set to PMID: 23867502; 35060086
Mendeliome v0.14026 ARHGDIA Elena Savva Mode of inheritance for gene: ARHGDIA was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14025 ARHGEF18 Elena Savva Marked gene: ARHGEF18 as ready
Mendeliome v0.14025 ARHGEF18 Elena Savva Gene: arhgef18 has been classified as Green List (High Evidence).
Mendeliome v0.14025 FGG Bryony Thompson Mode of inheritance for gene: FGG was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.14024 FGG Bryony Thompson reviewed gene: FGG: Rating: GREEN; Mode of pathogenicity: None; Publications: 2713997, 11001902, 11001903, 9746756, 23560673, 28992465, 10980108, 15304068; Phenotypes: congenital fibrinogen deficiency MONDO:0018060; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.14024 FGFR3 Bryony Thompson Phenotypes for gene: FGFR3 were changed from achondroplasia MONDO:0007037; Thanatophoric dysplasia type 1 MONDO:0008546; Thanatophoric dysplasia type 2 MONDO:0008547; hypochondroplasia MONDO:0007793; Muenke syndrome MONDO:0011274; FGFR3-related chondrodysplasia MONDO:0019685; severe achondroplasia-developmental delay-acanthosis nigricans syndrome MONDO:0014658; camptodactyly-tall stature-scoliosis-hearing loss syndrome MONDO:0012504; Crouzon syndrome-acanthosis nigricans syndrome MONDO:0012833 to achondroplasia MONDO:0007037; Thanatophoric dysplasia type 1 MONDO:0008546; Thanatophoric dysplasia type 2 MONDO:0008547; hypochondroplasia MONDO:0007793; Muenke syndrome MONDO:0011274; FGFR3-related chondrodysplasia MONDO:0019685; severe achondroplasia-developmental delay-acanthosis nigricans syndrome MONDO:0014658; Crouzon syndrome-acanthosis nigricans syndrome MONDO:0012833; camptodactyly-tall stature-scoliosis-hearing loss syndrome MONDO:0012504
Mendeliome v0.14023 FGFR3 Bryony Thompson Publications for gene: FGFR3 were set to 26740388; 20301331; 20301540; 20301650; 20301628; 24864036; 17033969
Mendeliome v0.14022 FGFR3 Bryony Thompson Mode of pathogenicity for gene: FGFR3 was changed from to Other
Mendeliome v0.14021 FGFR3 Bryony Thompson Mode of inheritance for gene: FGFR3 was changed from BOTH monoallelic and biallelic, autosomal or pseudoautosomal to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Macular Dystrophy/Stargardt Disease v0.38 GUCA1B Zornitza Stark Marked gene: GUCA1B as ready
Macular Dystrophy/Stargardt Disease v0.38 GUCA1B Zornitza Stark Gene: guca1b has been classified as Amber List (Moderate Evidence).
Macular Dystrophy/Stargardt Disease v0.38 GUCA1B Zornitza Stark Phenotypes for gene: GUCA1B were changed from Retinitis pigmentosa 48, 613827 to Retinitis pigmentosa 48, MIM#613827
Macular Dystrophy/Stargardt Disease v0.37 GUCA1B Zornitza Stark Publications for gene: GUCA1B were set to
Macular Dystrophy/Stargardt Disease v0.36 GUCA1B Zornitza Stark Mode of inheritance for gene: GUCA1B was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Macular Dystrophy/Stargardt Disease v0.35 GUCA1B Zornitza Stark Classified gene: GUCA1B as Amber List (moderate evidence)
Macular Dystrophy/Stargardt Disease v0.35 GUCA1B Zornitza Stark Gene: guca1b has been classified as Amber List (Moderate Evidence).
Macular Dystrophy/Stargardt Disease v0.34 GUCA1B Zornitza Stark Tag founder tag was added to gene: GUCA1B.
Macular Dystrophy/Stargardt Disease v0.34 GUCA1B Zornitza Stark reviewed gene: GUCA1B: Rating: AMBER; Mode of pathogenicity: None; Publications: 15452722, 26161267; Phenotypes: Retinitis pigmentosa 48, MIM# 613827; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14020 FGFR3 Bryony Thompson changed review comment from: FGFR3 has many well-established gene-disease associations with various skeletal dysplasia phenotypes. Gain-of-function is the main mechanism of disease for these disorders, except camptodactyly-tall stature-scoliosis-hearing loss syndrome where bialellic loss-of-function is the expected mechanism of disease. Specific monoallelic variants cause different phenotypes: >99% achondroplasia is caused by variants leading to the missense change p.Gly380Arg; Cysteine substitutions and stop-loss protein elongation variants are highly specific for Thanatophoric dysplasia (TD) type 1; p.Lys650Glu is associated with TD type 2; p.Ala391Glu causes Crouzon syndrome with acanthosis nigricans; and p.Pro250Arg causes Muenke syndrome.; to: FGFR3 has many well-established gene-disease associations with various skeletal dysplasia phenotypes. Gain-of-function is the main mechanism of disease for these disorders, except camptodactyly-tall stature-scoliosis-hearing loss syndrome (CATSHL syndrome, see separate curation below). Specific monoallelic variants cause different phenotypes: >99% achondroplasia is caused by variants leading to the missense change p.Gly380Arg; Cysteine substitutions and stop-loss protein elongation variants are highly specific for Thanatophoric dysplasia (TD) type 1; p.Lys650Glu is associated with TD type 2; p.Ala391Glu causes Crouzon syndrome with acanthosis nigricans; and p.Pro250Arg causes Muenke syndrome.
Moderate evidence for CATSHL syndrome, AD & AR: PMID: 8630492, 17033969, 27139183, 24864036, 32641982 - 2 apparently unrelated families segregating the same missense, p.Arg621His. One consanguineous family with 2 affected brothers with homozygous p.Thr546Lys. Heterozygous individuals in the family were unaffected. No functional assays were conducted for either missense to demonstrate loss of function. Null mouse and zebrafish models are similar to the human CATSHL syndrome phenotype.
Retinitis pigmentosa_Autosomal Dominant v0.51 GUCA1B Zornitza Stark Tag founder tag was added to gene: GUCA1B.
Retinitis pigmentosa_Autosomal Dominant v0.51 GUCA1B Zornitza Stark Marked gene: GUCA1B as ready
Retinitis pigmentosa_Autosomal Dominant v0.51 GUCA1B Zornitza Stark Gene: guca1b has been classified as Amber List (Moderate Evidence).
Retinitis pigmentosa_Autosomal Dominant v0.51 GUCA1B Zornitza Stark Phenotypes for gene: GUCA1B were changed from Retinitis pigmentosa 48, 613827 to Retinitis pigmentosa 48, MIM#613827
Retinitis pigmentosa_Autosomal Dominant v0.50 GUCA1B Zornitza Stark Publications for gene: GUCA1B were set to
Retinitis pigmentosa_Autosomal Dominant v0.49 GUCA1B Zornitza Stark Mode of inheritance for gene: GUCA1B was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Retinitis pigmentosa_Autosomal Dominant v0.48 GUCA1B Zornitza Stark Classified gene: GUCA1B as Amber List (moderate evidence)
Retinitis pigmentosa_Autosomal Dominant v0.48 GUCA1B Zornitza Stark Gene: guca1b has been classified as Amber List (Moderate Evidence).
Retinitis pigmentosa_Autosomal Dominant v0.47 GUCA1B Zornitza Stark reviewed gene: GUCA1B: Rating: AMBER; Mode of pathogenicity: None; Publications: 15452722, 26161267; Phenotypes: Retinitis pigmentosa 48, MIM# 613827; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14020 GUCA1B Zornitza Stark changed review comment from: Single founder variant identified in several Japanese individuals.; to: Single founder variant identified in several Japanese individuals.

No other P/LP variants in ClinVar.
Mendeliome v0.14020 GUCA1B Zornitza Stark Marked gene: GUCA1B as ready
Mendeliome v0.14020 GUCA1B Zornitza Stark Gene: guca1b has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14020 GUCA1B Zornitza Stark Phenotypes for gene: GUCA1B were changed from to Retinitis pigmentosa 48, MIM# 613827
Mendeliome v0.14019 GUCA1B Zornitza Stark Publications for gene: GUCA1B were set to
Mendeliome v0.14018 GUCA1B Zornitza Stark Mode of inheritance for gene: GUCA1B was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14017 GUCA1B Zornitza Stark Classified gene: GUCA1B as Amber List (moderate evidence)
Mendeliome v0.14017 GUCA1B Zornitza Stark Gene: guca1b has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14016 GUCA1B Zornitza Stark edited their review of gene: GUCA1B: Changed mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14016 FGFR3 Bryony Thompson edited their review of gene: FGFR3: Changed mode of pathogenicity: Other; Changed publications: 8630492, 32641982, 27139183, 24864036, 17033969, 20301331, 20301540, 20301650, 20301628; Changed phenotypes: achondroplasia MONDO:0007037, Thanatophoric dysplasia type 1 MONDO:0008546, Thanatophoric dysplasia type 2 MONDO:0008547, hypochondroplasia MONDO:0007793, Muenke syndrome MONDO:0011274, FGFR3-related chondrodysplasia MONDO:0019685, severe achondroplasia-developmental delay-acanthosis nigricans syndrome MONDO:0014658, Crouzon syndrome-acanthosis nigricans syndrome MONDO:0012833, camptodactyly-tall stature-scoliosis-hearing loss syndrome MONDO:0012504; Changed mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.14016 GUCA1B Zornitza Stark Tag founder tag was added to gene: GUCA1B.
Mendeliome v0.14016 GUCA1B Zornitza Stark reviewed gene: GUCA1B: Rating: AMBER; Mode of pathogenicity: None; Publications: 15452722, 26161267; Phenotypes: Retinitis pigmentosa 48, MIM# 613827; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14016 GUCY1A3 Zornitza Stark Marked gene: GUCY1A3 as ready
Mendeliome v0.14016 GUCY1A3 Zornitza Stark Gene: gucy1a3 has been classified as Green List (High Evidence).
Mendeliome v0.14016 GUCY1A3 Zornitza Stark Phenotypes for gene: GUCY1A3 were changed from to Moyamoya 6 with achalasia, MIM# 615750
Mendeliome v0.14015 GUCY1A3 Zornitza Stark Publications for gene: GUCY1A3 were set to
Mendeliome v0.14014 GUCY1A3 Zornitza Stark Mode of inheritance for gene: GUCY1A3 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14013 GUCY1A3 Zornitza Stark reviewed gene: GUCY1A3: Rating: GREEN; Mode of pathogenicity: None; Publications: 24581742, 26777256, 34381413, 33109895; Phenotypes: Moyamoya 6 with achalasia, MIM# 615750; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14013 GYG1 Zornitza Stark Marked gene: GYG1 as ready
Mendeliome v0.14013 GYG1 Zornitza Stark Gene: gyg1 has been classified as Green List (High Evidence).
Mendeliome v0.14013 GYG1 Zornitza Stark Phenotypes for gene: GYG1 were changed from to Polyglucosan body myopathy 2, MIM# 616199; Glycogen storage disease XV , MIM# 613507
Mendeliome v0.14012 GYG1 Zornitza Stark Publications for gene: GYG1 were set to
Mendeliome v0.14011 GYG1 Zornitza Stark Mode of inheritance for gene: GYG1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14010 GYG1 Zornitza Stark reviewed gene: GYG1: Rating: GREEN; Mode of pathogenicity: None; Publications: 32905144, 31791869, 29422440, 25272951, 20357282; Phenotypes: Polyglucosan body myopathy 2, MIM# 616199, Glycogen storage disease XV , MIM# 613507; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14010 GUCY2D Zornitza Stark Marked gene: GUCY2D as ready
Mendeliome v0.14010 GUCY2D Zornitza Stark Gene: gucy2d has been classified as Green List (High Evidence).
Mendeliome v0.14010 GUCY2D Zornitza Stark Phenotypes for gene: GUCY2D were changed from to Cone-rod dystrophy 6, MIM# 601777; Leber congenital amaurosis 1, MIM# 204000; Night blindness, congenital stationary, type 1I, MIM# 618555
Mendeliome v0.14009 GUCY2D Zornitza Stark Publications for gene: GUCY2D were set to
Mendeliome v0.14008 GUCY2D Zornitza Stark Mode of inheritance for gene: GUCY2D was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.14007 GUCY2D Zornitza Stark reviewed gene: GUCY2D: Rating: GREEN; Mode of pathogenicity: None; Publications: 35314386, 35205358; Phenotypes: Cone-rod dystrophy 6, MIM# 601777, Leber congenital amaurosis 1, MIM# 204000, Night blindness, congenital stationary, type 1I, MIM# 618555; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.14007 HPRT1 Zornitza Stark Marked gene: HPRT1 as ready
Mendeliome v0.14007 HPRT1 Zornitza Stark Gene: hprt1 has been classified as Green List (High Evidence).
Mendeliome v0.14007 HPRT1 Zornitza Stark Phenotypes for gene: HPRT1 were changed from to HPRT-related gout (MIM# 300323); Lesch-Nyhan syndrome (MIM# 300322)
Mendeliome v0.14006 ARHGEF18 Elena Savva Phenotypes for gene: ARHGEF18 were changed from to Retinitis pigmentosa 78 MIM#617433
Mendeliome v0.14005 ARHGEF18 Elena Savva Publications for gene: ARHGEF18 were set to
Mendeliome v0.14005 ARHGEF18 Elena Savva Mode of inheritance for gene: ARHGEF18 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14004 ARHGEF18 Elena Savva reviewed gene: ARHGEF18: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 28132693; Phenotypes: Retinitis pigmentosa 78 MIM#617433; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14004 ARHGDIA Elena Savva Publications for gene: ARHGDIA were set to
Mendeliome v0.14004 ARHGDIA Elena Savva Phenotypes for gene: ARHGDIA were changed from to Nephrotic syndrome, type 8 MIM#615244
Mendeliome v0.14004 ARHGDIA Elena Savva Mode of inheritance for gene: ARHGDIA was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14003 ARHGDIA Elena Savva Marked gene: ARHGDIA as ready
Mendeliome v0.14003 ARHGDIA Elena Savva Gene: arhgdia has been classified as Green List (High Evidence).
Mendeliome v0.14003 ARHGDIA Elena Savva reviewed gene: ARHGDIA: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 23867502, 35060086; Phenotypes: Nephrotic syndrome, type 8 MIM#615244; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.14003 ARHGAP31 Elena Savva Marked gene: ARHGAP31 as ready
Mendeliome v0.14003 ARHGAP31 Elena Savva Gene: arhgap31 has been classified as Green List (High Evidence).
Mendeliome v0.14003 ARHGAP31 Elena Savva Phenotypes for gene: ARHGAP31 were changed from to Adams-Oliver syndrome 1, MIM#100300
Mendeliome v0.14002 ARHGAP31 Elena Savva Publications for gene: ARHGAP31 were set to
Mendeliome v0.14001 ARHGAP31 Elena Savva Mode of inheritance for gene: ARHGAP31 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14000 ARHGAP31 Elena Savva reviewed gene: ARHGAP31: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 33655927, 29924900; Phenotypes: Adams-Oliver syndrome 1, MIM#100300; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.14000 ANXA5 Elena Savva Marked gene: ANXA5 as ready
Mendeliome v0.14000 ANXA5 Elena Savva Gene: anxa5 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.14000 ANXA5 Elena Savva Phenotypes for gene: ANXA5 were changed from to {Pregnancy loss, recurrent, susceptibility to, 3} MIM#614391
Mendeliome v0.13999 ANXA5 Elena Savva Publications for gene: ANXA5 were set to
Mendeliome v0.13999 ANXA5 Elena Savva Mode of inheritance for gene: ANXA5 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13998 ANXA5 Elena Savva Classified gene: ANXA5 as Amber List (moderate evidence)
Mendeliome v0.13998 ANXA5 Elena Savva Gene: anxa5 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13997 AR Elena Savva Marked gene: AR as ready
Mendeliome v0.13997 AR Elena Savva Gene: ar has been classified as Green List (High Evidence).
Mendeliome v0.13997 GYPA Zornitza Stark Marked gene: GYPA as ready
Mendeliome v0.13997 GYPA Zornitza Stark Gene: gypa has been classified as Red List (Low Evidence).
Mendeliome v0.13997 GYPA Zornitza Stark Phenotypes for gene: GYPA were changed from to [Blood group, MNSs system] 111300
Mendeliome v0.13996 GYPA Zornitza Stark Mode of inheritance for gene: GYPA was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13995 GYPA Zornitza Stark Classified gene: GYPA as Red List (low evidence)
Mendeliome v0.13995 GYPA Zornitza Stark Gene: gypa has been classified as Red List (Low Evidence).
Mendeliome v0.13994 GYPA Zornitza Stark reviewed gene: GYPA: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: [Blood group, MNSs system] 111300; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13994 GYPB Zornitza Stark Marked gene: GYPB as ready
Mendeliome v0.13994 GYPB Zornitza Stark Gene: gypb has been classified as Red List (Low Evidence).
Mendeliome v0.13994 GYPB Zornitza Stark Phenotypes for gene: GYPB were changed from to [Blood group, Ss] 111740
Mendeliome v0.13993 GYPB Zornitza Stark Mode of inheritance for gene: GYPB was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13992 GYPB Zornitza Stark Classified gene: GYPB as Red List (low evidence)
Mendeliome v0.13992 GYPB Zornitza Stark Gene: gypb has been classified as Red List (Low Evidence).
Mendeliome v0.13991 GYPB Zornitza Stark reviewed gene: GYPB: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: [Blood group, Ss] 111740; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Miscellaneous Metabolic Disorders v1.16 HAAO Zornitza Stark Publications for gene: HAAO were set to 28792876
Miscellaneous Metabolic Disorders v1.15 HAAO Zornitza Stark reviewed gene: HAAO: Rating: GREEN; Mode of pathogenicity: None; Publications: 33942433; Phenotypes: Vertebral, cardiac, renal, and limb defects syndrome 1 MIM#617660; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Deafness_IsolatedAndComplex v1.131 HAAO Zornitza Stark Publications for gene: HAAO were set to 28792876
Deafness_IsolatedAndComplex v1.130 HAAO Zornitza Stark edited their review of gene: HAAO: Added comment: PMID 33942433: three additional families.; Changed publications: 28792876, 33942433
Mendeliome v0.13991 HAAO Zornitza Stark reviewed gene: HAAO: Rating: GREEN; Mode of pathogenicity: None; Publications: 33942433; Phenotypes: Vertebral, cardiac, renal, and limb defects syndrome 1 MIM#617660; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.113 HAAO Zornitza Stark Publications for gene: HAAO were set to 28792876
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.112 HAAO Zornitza Stark edited their review of gene: HAAO: Added comment: PMID 33942433: three additional families.; Changed publications: 28792876, 33942433
Mendeliome v0.13991 DSE Krithika Murali reviewed gene: DSE: Rating: GREEN; Mode of pathogenicity: None; Publications: 28306229, 23704329, 25703627, 32130795; Phenotypes: Ehlers-Danlos syndrome, musculocontractural type 2 - MIM#615539; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13991 DSG4 Krithika Murali reviewed gene: DSG4: Rating: GREEN; Mode of pathogenicity: None; Publications: 12705872, 16439973, 16543896, 16575393, 17392831; Phenotypes: Hypotrichosis 6 - MIM#607903; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13991 DSPP Krithika Murali reviewed gene: DSPP: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Deafness, autosomal dominant 39, with dentinogenesis - MIM#605594, Dentin dysplasia, type II - MIM#125420, Dentinogenesis imperfecta, Shields type II - MIM#125490, Dentinogenesis imperfecta, Shields type III - MIM#125500; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13991 DUOX2 Krithika Murali reviewed gene: DUOX2: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Thyroid dyshormonogenesis 6 - MIM#607200; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13991 DUOXA2 Krithika Murali reviewed gene: DUOXA2: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Thyroid dyshormonogenesis 5 - MIM#274900; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 RP2 Belinda Chong reviewed gene: RP2: Rating: GREEN; Mode of pathogenicity: None; Publications: 9697692, 10053026, 10942419, 11462235, 12417528, 8225316, 26143542; Phenotypes: Retinitis pigmentosa 2 MIM#312600; Mode of inheritance: X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males); Current diagnostic: yes
Mendeliome v0.13991 RP2 Belinda Chong reviewed gene: RP2: Rating: GREEN; Mode of pathogenicity: None; Publications: 9697692, 10053026, 10942419, 11462235, 12417528, 8225316, 26143542; Phenotypes: Retinitis pigmentosa 2 MIM#312600; Mode of inheritance: X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males); Current diagnostic: yes
Mendeliome v0.13991 RP9 Belinda Chong reviewed gene: RP9: Rating: RED; Mode of pathogenicity: None; Publications: 16799052, 16671097; Phenotypes: ?Retinitis pigmentosa 9 MIM#180104; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Retinitis pigmentosa_Autosomal Dominant v0.47 RP9 Belinda Chong reviewed gene: RP9: Rating: RED; Mode of pathogenicity: None; Publications: 16799052, 16671097; Phenotypes: ?Retinitis pigmentosa 9 MIM#180104; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Retinitis pigmentosa_Autosomal Dominant v0.47 RPE65 Belinda Chong reviewed gene: RPE65: Rating: GREEN; Mode of pathogenicity: None; Publications: Retinitis pigmentosa 87 with choroidal involvement MIM#618697; Phenotypes: 21654732, 27307694, 27307694; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13991 LZTS1 Alison Yeung Marked gene: LZTS1 as ready
Mendeliome v0.13991 LZTS1 Alison Yeung Gene: lzts1 has been classified as Red List (Low Evidence).
Mendeliome v0.13991 LZTS1 Alison Yeung Phenotypes for gene: LZTS1 were changed from to Esophageal squamous cell carcinoma, somatic, MIM# 133239
Mendeliome v0.13990 LZTS1 Alison Yeung Classified gene: LZTS1 as Red List (low evidence)
Mendeliome v0.13990 LZTS1 Alison Yeung Gene: lzts1 has been classified as Red List (Low Evidence).
Mendeliome v0.13989 LZTS1 Alison Yeung reviewed gene: LZTS1: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: Esophageal squamous cell carcinoma, somatic, MIM# 133239; Mode of inheritance: Unknown
Mendeliome v0.13989 LYZ Alison Yeung Marked gene: LYZ as ready
Mendeliome v0.13989 LYZ Alison Yeung Gene: lyz has been classified as Green List (High Evidence).
Mendeliome v0.13989 LYZ Alison Yeung Phenotypes for gene: LYZ were changed from to Amyloidosis, renal, MIM# 105200
Mendeliome v0.13988 LYZ Alison Yeung Publications for gene: LYZ were set to
Mendeliome v0.13987 LYZ Alison Yeung Mode of inheritance for gene: LYZ was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13986 LYST Alison Yeung Marked gene: LYST as ready
Mendeliome v0.13986 LYST Alison Yeung Gene: lyst has been classified as Green List (High Evidence).
Mendeliome v0.13986 LYST Alison Yeung Phenotypes for gene: LYST were changed from to Chediak-Higashi syndrome, MIM# 214500
Mendeliome v0.13985 LYST Alison Yeung Mode of inheritance for gene: LYST was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13984 LYRM7 Alison Yeung Marked gene: LYRM7 as ready
Mendeliome v0.13984 LYRM7 Alison Yeung Gene: lyrm7 has been classified as Green List (High Evidence).
Mendeliome v0.13984 LYRM7 Alison Yeung Phenotypes for gene: LYRM7 were changed from to Mitochondrial complex III deficiency, nuclear type 8, MIM#615838
Mendeliome v0.13983 LYRM7 Alison Yeung Mode of inheritance for gene: LYRM7 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13982 LYN Alison Yeung Marked gene: LYN as ready
Mendeliome v0.13982 LYN Alison Yeung Added comment: Comment when marking as ready: No human disease association published. Mouse models suggest role in auto inflammatory pathways.
Mendeliome v0.13982 LYN Alison Yeung Gene: lyn has been classified as Red List (Low Evidence).
Mendeliome v0.13982 LYN Alison Yeung Classified gene: LYN as Red List (low evidence)
Mendeliome v0.13982 LYN Alison Yeung Gene: lyn has been classified as Red List (Low Evidence).
Vasculitis v0.64 LYN Alison Yeung Marked gene: LYN as ready
Vasculitis v0.64 LYN Alison Yeung Added comment: Comment when marking as ready: No human disease association published. Mouse models suggest role in autoinflammatory pathways.
Vasculitis v0.64 LYN Alison Yeung Gene: lyn has been classified as Red List (Low Evidence).
Vasculitis v0.64 LYN Alison Yeung Mode of inheritance for gene: LYN was changed from Unknown to Unknown
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 RPE65 Belinda Chong reviewed gene: RPE65: Rating: GREEN; Mode of pathogenicity: None; Publications: 9326941, 9501220, 15557452; Phenotypes: Retinitis pigmentosa 20 MIM#613794; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Vasculitis v0.63 LYN Alison Yeung Classified gene: LYN as Red List (low evidence)
Vasculitis v0.63 LYN Alison Yeung Gene: lyn has been classified as Red List (Low Evidence).
Vasculitis v0.62 LYN Alison Yeung reviewed gene: LYN: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: Unknown
Mendeliome v0.13981 LTC4S Alison Yeung Marked gene: LTC4S as ready
Mendeliome v0.13981 LTC4S Alison Yeung Gene: ltc4s has been classified as Red List (Low Evidence).
Mendeliome v0.13981 LTC4S Alison Yeung Phenotypes for gene: LTC4S were changed from to Leukotriene C4 synthase deficiency, MIM# 614037
Mendeliome v0.13980 LTC4S Alison Yeung Mode of inheritance for gene: LTC4S was changed from Unknown to Unknown
Mendeliome v0.13979 LTC4S Alison Yeung Classified gene: LTC4S as Red List (low evidence)
Mendeliome v0.13979 LTC4S Alison Yeung Gene: ltc4s has been classified as Red List (Low Evidence).
Mendeliome v0.13978 LTC4S Alison Yeung reviewed gene: LTC4S: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: Leukotriene C4 synthase deficiency, MIM# 614037; Mode of inheritance: Other
Mendeliome v0.13978 LTA Alison Yeung Marked gene: LTA as ready
Mendeliome v0.13978 LTA Alison Yeung Added comment: Comment when marking as ready: Not associated with Mendelian disease
Mendeliome v0.13978 LTA Alison Yeung Gene: lta has been classified as Red List (Low Evidence).
Mendeliome v0.13978 LTA Alison Yeung Phenotypes for gene: LTA were changed from to Myocardial infarction, susceptibility to, MIM# 608446
Mendeliome v0.13977 LTA Alison Yeung Mode of inheritance for gene: LTA was changed from Other to Other
Mendeliome v0.13977 LTA Alison Yeung Mode of inheritance for gene: LTA was changed from Unknown to Other
Mendeliome v0.13976 LTA Alison Yeung Classified gene: LTA as Red List (low evidence)
Mendeliome v0.13976 LTA Alison Yeung Gene: lta has been classified as Red List (Low Evidence).
Mendeliome v0.13975 LTA Alison Yeung reviewed gene: LTA: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: Myocardial infarction, susceptibility to, MIM# 608446; Mode of inheritance: Other
Mendeliome v0.13975 LRP6 Alison Yeung Marked gene: LRP6 as ready
Mendeliome v0.13975 LRP6 Alison Yeung Gene: lrp6 has been classified as Green List (High Evidence).
Mendeliome v0.13975 LRP6 Alison Yeung Phenotypes for gene: LRP6 were changed from to Tooth agenesis, selective, 7, MIM# 616724
Mendeliome v0.13974 LRP6 Alison Yeung Mode of inheritance for gene: LRP6 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13973 LRP5 Alison Yeung Marked gene: LRP5 as ready
Mendeliome v0.13973 LRP5 Alison Yeung Gene: lrp5 has been classified as Green List (High Evidence).
Mendeliome v0.13973 LRP5 Alison Yeung Phenotypes for gene: LRP5 were changed from to Exudative vitreoretinopathy 4, MIM# 601813; Osteopetrosis, autosomal dominant 1, MIM# 607634; Osteoporosis-pseudoglioma syndrome, MIM# 259770; Osteosclerosis, MIM# 144750; Polycystic liver disease 4 with or without kidney cysts, MIM# 617875
Mendeliome v0.13972 LRP5 Alison Yeung Mode of inheritance for gene: LRP5 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13971 LRP2 Alison Yeung Marked gene: LRP2 as ready
Mendeliome v0.13971 LRP2 Alison Yeung Gene: lrp2 has been classified as Green List (High Evidence).
Mendeliome v0.13971 LRP2 Alison Yeung Phenotypes for gene: LRP2 were changed from to Donnai-Barrow syndrome, MIM# 222448
Mendeliome v0.13970 LRIG2 Alison Yeung Marked gene: LRIG2 as ready
Mendeliome v0.13970 LRIG2 Alison Yeung Gene: lrig2 has been classified as Green List (High Evidence).
Mendeliome v0.13970 LRIG2 Alison Yeung Phenotypes for gene: LRIG2 were changed from to Urofacial syndrome 2, MIM# 615112
Mendeliome v0.13969 LRIG2 Alison Yeung Publications for gene: LRIG2 were set to 23313374; 27855655; 30885509
Mendeliome v0.13969 LRIG2 Alison Yeung Publications for gene: LRIG2 were set to
Mendeliome v0.13968 LRIG2 Alison Yeung Mode of inheritance for gene: LRIG2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13967 LRIG2 Alison Yeung reviewed gene: LRIG2: Rating: GREEN; Mode of pathogenicity: None; Publications: 23313374, 27855655, 30885509; Phenotypes: Urofacial syndrome 2, MIM# 615112; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13967 FGFR3 Bryony Thompson Marked gene: FGFR3 as ready
Mendeliome v0.13967 FGFR3 Bryony Thompson Gene: fgfr3 has been classified as Green List (High Evidence).
Mendeliome v0.13967 FGFR3 Bryony Thompson Phenotypes for gene: FGFR3 were changed from to achondroplasia MONDO:0007037; Thanatophoric dysplasia type 1 MONDO:0008546; Thanatophoric dysplasia type 2 MONDO:0008547; hypochondroplasia MONDO:0007793; Muenke syndrome MONDO:0011274; FGFR3-related chondrodysplasia MONDO:0019685; severe achondroplasia-developmental delay-acanthosis nigricans syndrome MONDO:0014658; camptodactyly-tall stature-scoliosis-hearing loss syndrome MONDO:0012504; Crouzon syndrome-acanthosis nigricans syndrome MONDO:0012833
Mendeliome v0.13966 FGFR3 Bryony Thompson Publications for gene: FGFR3 were set to
Mendeliome v0.13965 FGFR3 Bryony Thompson Mode of inheritance for gene: FGFR3 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13964 FGFR3 Bryony Thompson reviewed gene: FGFR3: Rating: GREEN; Mode of pathogenicity: None; Publications: 26740388, 20301331, 20301540, 20301650, 20301628, 24864036, 17033969; Phenotypes: achondroplasia MONDO:0007037, Thanatophoric dysplasia type 1 MONDO:0008546, Thanatophoric dysplasia type 2 MONDO:0008547, hypochondroplasia MONDO:0007793, Muenke syndrome MONDO:0011274, FGFR3-related chondrodysplasia MONDO:0019685, severe achondroplasia-developmental delay-acanthosis nigricans syndrome MONDO:0014658, camptodactyly-tall stature-scoliosis-hearing loss syndrome MONDO:0012504, Crouzon syndrome-acanthosis nigricans syndrome MONDO:0012833; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13964 DNAJB6 Ain Roesley Marked gene: DNAJB6 as ready
Mendeliome v0.13964 DNAJB6 Ain Roesley Gene: dnajb6 has been classified as Green List (High Evidence).
Mendeliome v0.13964 DNAJB6 Ain Roesley Phenotypes for gene: DNAJB6 were changed from to Muscular dystrophy, limb-girdle, autosomal dominant 1 MIM#603511
Mendeliome v0.13963 DNAJB6 Ain Roesley Publications for gene: DNAJB6 were set to
Mendeliome v0.13963 DNAJB6 Ain Roesley Mode of inheritance for gene: DNAJB6 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13962 DNAJB6 Ain Roesley reviewed gene: DNAJB6: Rating: GREEN; Mode of pathogenicity: None; Publications: 26847086, 26338452, 24170373; Phenotypes: Muscular dystrophy, limb-girdle, autosomal dominant 1 MIM#603511; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13962 DNAH1 Ain Roesley Phenotypes for gene: DNAH1 were changed from Spermatogenic failure 18 MIM#617576 to primary ciliary dyskinesia,37 MIM#617577; Spermatogenic failure 18 MIM#617576
Mendeliome v0.13961 DNAH1 Ain Roesley Marked gene: DNAH1 as ready
Mendeliome v0.13961 DNAH1 Ain Roesley Gene: dnah1 has been classified as Green List (High Evidence).
Mendeliome v0.13961 DNAH1 Ain Roesley Phenotypes for gene: DNAH1 were changed from to Spermatogenic failure 18 MIM#617576
Mendeliome v0.13960 DNAH1 Ain Roesley Publications for gene: DNAH1 were set to
Mendeliome v0.13959 DNAH1 Ain Roesley Mode of inheritance for gene: DNAH1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13958 DNAH1 Ain Roesley reviewed gene: DNAH1: Rating: GREEN; Mode of pathogenicity: None; Publications: 31507630, 31765523, 25927852, 24360805, 33577779; Phenotypes: primary ciliary dyskinesia,37 MIM#617577, Spermatogenic failure 18 MIM#617576; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Ciliary Dyskinesia v1.18 DNAH1 Ain Roesley reviewed gene: DNAH1: Rating: AMBER; Mode of pathogenicity: None; Publications: 33577779; Phenotypes: Ciliary dyskinesia, primary, 37 MIM#617577; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13958 DNA2 Ain Roesley Marked gene: DNA2 as ready
Mendeliome v0.13958 DNA2 Ain Roesley Gene: dna2 has been classified as Green List (High Evidence).
Mendeliome v0.13958 DNA2 Ain Roesley Phenotypes for gene: DNA2 were changed from to Seckel syndrome 8, MIM#615807; Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 6 MIM#615156
Mendeliome v0.13957 DNA2 Ain Roesley Publications for gene: DNA2 were set to
Mendeliome v0.13957 DNA2 Ain Roesley Mode of inheritance for gene: DNA2 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13956 DNA2 Ain Roesley reviewed gene: DNA2: Rating: GREEN; Mode of pathogenicity: None; Publications: 24389050, 31045292, 23352259, 25635128, 28554558; Phenotypes: Seckel syndrome 8, MIM#615807, Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 6 MIM#615156; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13956 DMD Ain Roesley Tag SV/CNV tag was added to gene: DMD.
Mendeliome v0.13956 DMP1 Ain Roesley Marked gene: DMP1 as ready
Mendeliome v0.13956 DMP1 Ain Roesley Gene: dmp1 has been classified as Green List (High Evidence).
Mendeliome v0.13956 DMP1 Ain Roesley Publications for gene: DMP1 were set to
Mendeliome v0.13956 DMP1 Ain Roesley Phenotypes for gene: DMP1 were changed from to Hypophosphatemic rickets MIM#241520
Mendeliome v0.13956 DMP1 Ain Roesley Mode of inheritance for gene: DMP1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13955 DMP1 Ain Roesley reviewed gene: DMP1: Rating: GREEN; Mode of pathogenicity: None; Publications: 32920683, 17033625, 17033621; Phenotypes: Hypophosphatemic rickets MIM#241520; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13955 AQP3 Elena Savva Phenotypes for gene: AQP3 were changed from to [Blood group GIL] MIM#607457
Mendeliome v0.13954 AQP3 Elena Savva Marked gene: AQP3 as ready
Mendeliome v0.13954 AQP3 Elena Savva Gene: aqp3 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13954 DMD Ain Roesley Marked gene: DMD as ready
Mendeliome v0.13954 DMD Ain Roesley Gene: dmd has been classified as Green List (High Evidence).
Mendeliome v0.13954 DMD Ain Roesley Phenotypes for gene: DMD were changed from to Becker muscular dystrophy MIM@300376 XLR; Cardiomyopathy, dilated, 3B MIM#302045 XL; Duchenne muscular dystrophy MIM#310200
Mendeliome v0.13953 DMD Ain Roesley Publications for gene: DMD were set to
Mendeliome v0.13953 DMD Ain Roesley Mode of inheritance for gene: DMD was changed from Unknown to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Mendeliome v0.13952 DMD Ain Roesley reviewed gene: DMD: Rating: GREEN; Mode of pathogenicity: None; Publications: 20301298; Phenotypes: Becker muscular dystrophy MIM@300376 XLR, Cardiomyopathy, dilated, 3B MIM#302045 XL, Duchenne muscular dystrophy MIM#310200; Mode of inheritance: X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males); Current diagnostic: yes
Mendeliome v0.13952 DLX3 Ain Roesley Marked gene: DLX3 as ready
Mendeliome v0.13952 DLX3 Ain Roesley Gene: dlx3 has been classified as Green List (High Evidence).
Mendeliome v0.13952 DLX3 Ain Roesley Phenotypes for gene: DLX3 were changed from to Amelogenesis imperfecta, type IV, MIM# 104510; Trichodontoosseous syndrome, MIM# 190320
Mendeliome v0.13952 DLX3 Ain Roesley Publications for gene: DLX3 were set to
Mendeliome v0.13952 DLX3 Ain Roesley Mode of inheritance for gene: DLX3 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13951 DLX3 Ain Roesley reviewed gene: DLX3: Rating: GREEN; Mode of pathogenicity: None; Publications: 9467018, 15666299, 18203197; Phenotypes: Amelogenesis imperfecta, type IV, MIM# 104510, Trichodontoosseous syndrome, MIM# 190320; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13951 DLAT Ain Roesley Marked gene: DLAT as ready
Mendeliome v0.13951 DLAT Ain Roesley Gene: dlat has been classified as Green List (High Evidence).
Mendeliome v0.13951 DLAT Ain Roesley Publications for gene: DLAT were set to
Mendeliome v0.13950 DLAT Ain Roesley Phenotypes for gene: DLAT were changed from to Pyruvate dehydrogenase E2 deficiency MIM#245348
Mendeliome v0.13950 DLAT Ain Roesley Mode of inheritance for gene: DLAT was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13949 DLAT Ain Roesley reviewed gene: DLAT: Rating: GREEN; Mode of pathogenicity: None; Publications: 34138529; Phenotypes: Pyruvate dehydrogenase E2 deficiency MIM#245348; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13949 SLC22A12 Manny Jacobs reviewed gene: SLC22A12: Rating: GREEN; Mode of pathogenicity: None; Publications: 14655203, 34412930, 34756726, 34829836, 26821810; Phenotypes: Hypouricemia, renal, MIM# 220150, MONDO:0020728; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13949 DISC1 Ain Roesley Marked gene: DISC1 as ready
Mendeliome v0.13949 DISC1 Ain Roesley Gene: disc1 has been classified as Red List (Low Evidence).
Mendeliome v0.13949 DISC1 Ain Roesley Phenotypes for gene: DISC1 were changed from to {Schizophrenia 9, susceptibility to} MIM#604906
Mendeliome v0.13949 DISC1 Ain Roesley Publications for gene: DISC1 were set to
Mendeliome v0.13949 DISC1 Ain Roesley Classified gene: DISC1 as Red List (low evidence)
Mendeliome v0.13949 DISC1 Ain Roesley Gene: disc1 has been classified as Red List (Low Evidence).
Mendeliome v0.13948 DISC1 Ain Roesley reviewed gene: DISC1: Rating: RED; Mode of pathogenicity: None; Publications: 18945897; Phenotypes: {Schizophrenia 9, susceptibility to} MIM#604906; Mode of inheritance: None; Current diagnostic: yes
Mendeliome v0.13948 LPL Alison Yeung Marked gene: LPL as ready
Mendeliome v0.13948 LPL Alison Yeung Gene: lpl has been classified as Green List (High Evidence).
Mendeliome v0.13948 LPL Alison Yeung Phenotypes for gene: LPL were changed from to Combined hyperlipidemia, familial, MIM# 144250; Lipoprotein lipase deficiency, MIM# 238600
Mendeliome v0.13947 LPL Alison Yeung Mode of inheritance for gene: LPL was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13946 LPL Alison Yeung reviewed gene: LPL: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Combined hyperlipidemia, familial, MIM# 144250, Lipoprotein lipase deficiency, MIM# 238600; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13946 DHTKD1 Ain Roesley Marked gene: DHTKD1 as ready
Mendeliome v0.13946 DHTKD1 Ain Roesley Added comment: Comment when marking as ready: green for AR, amber for AD
Mendeliome v0.13946 DHTKD1 Ain Roesley Gene: dhtkd1 has been classified as Green List (High Evidence).
Mendeliome v0.13946 DHTKD1 Ain Roesley Publications for gene: DHTKD1 were set to
Mendeliome v0.13945 DHTKD1 Ain Roesley Phenotypes for gene: DHTKD1 were changed from to Alpha-aminoadipic and alpha-ketoadipic aciduria MIM#204750, AR; Charcot-Marie-Tooth disease, axonal, type 2Q, MIM#615025
Mendeliome v0.13944 DHTKD1 Ain Roesley Mode of inheritance for gene: DHTKD1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13943 LPAR6 Alison Yeung Marked gene: LPAR6 as ready
Mendeliome v0.13943 LPAR6 Alison Yeung Gene: lpar6 has been classified as Green List (High Evidence).
Mendeliome v0.13943 LPAR6 Alison Yeung Phenotypes for gene: LPAR6 were changed from to Woolly hair, autosomal recessive 1, with or without hypotrichosis, MIM# 609239
Mendeliome v0.13942 LPAR6 Alison Yeung Mode of inheritance for gene: LPAR6 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13941 LPAR6 Alison Yeung reviewed gene: LPAR6: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Woolly hair, autosomal recessive 1, with or without hypotrichosis, MIM# 609239; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13941 DHH Ain Roesley Marked gene: DHH as ready
Mendeliome v0.13941 DHH Ain Roesley Gene: dhh has been classified as Green List (High Evidence).
Mendeliome v0.13941 DHH Ain Roesley Phenotypes for gene: DHH were changed from 46XY partial gonadal dysgenesis, with minifascicular neuropathy, MIM# 607080 to 46XY gonadal dysgenesis with minifascicular neuropathy MIM#607080; 46XY sex reversal 7 MIM#233420
Mendeliome v0.13940 LOXL1 Alison Yeung Marked gene: LOXL1 as ready
Mendeliome v0.13940 LOXL1 Alison Yeung Gene: loxl1 has been classified as Red List (Low Evidence).
Mendeliome v0.13940 LOXL1 Alison Yeung Mode of inheritance for gene: LOXL1 was changed from Unknown to Other
Mendeliome v0.13939 LOXL1 Alison Yeung Phenotypes for gene: LOXL1 were changed from to Exfoliation syndrome, susceptibility to, MIM#177650
Mendeliome v0.13938 LOXL1 Alison Yeung Classified gene: LOXL1 as Red List (low evidence)
Mendeliome v0.13938 LOXL1 Alison Yeung Gene: loxl1 has been classified as Red List (Low Evidence).
Mendeliome v0.13937 LOXL1 Alison Yeung reviewed gene: LOXL1: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: Exfoliation syndrome, susceptibility to, MIM#177650; Mode of inheritance: Other
Mendeliome v0.13937 LMF1 Alison Yeung Marked gene: LMF1 as ready
Mendeliome v0.13937 LMF1 Alison Yeung Gene: lmf1 has been classified as Green List (High Evidence).
Mendeliome v0.13937 LMF1 Alison Yeung Phenotypes for gene: LMF1 were changed from to Lipase deficiency, combined, MIM# 246650
Mendeliome v0.13936 LMF1 Alison Yeung Mode of inheritance for gene: LMF1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13935 LMF1 Alison Yeung reviewed gene: LMF1: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Lipase deficiency, combined, MIM# 246650; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13935 LMBRD1 Alison Yeung Marked gene: LMBRD1 as ready
Mendeliome v0.13935 LMBRD1 Alison Yeung Gene: lmbrd1 has been classified as Green List (High Evidence).
Mendeliome v0.13935 LMBRD1 Alison Yeung Phenotypes for gene: LMBRD1 were changed from to Methylmalonic aciduria and homocystinuria, cblF type MIM# 277380
Mendeliome v0.13934 LMBRD1 Alison Yeung Publications for gene: LMBRD1 were set to
Mendeliome v0.13933 LMBRD1 Alison Yeung Mode of inheritance for gene: LMBRD1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13932 LMBR1 Alison Yeung Marked gene: LMBR1 as ready
Mendeliome v0.13932 LMBR1 Alison Yeung Gene: lmbr1 has been classified as Green List (High Evidence).
Mendeliome v0.13932 LMBR1 Alison Yeung Phenotypes for gene: LMBR1 were changed from to Laurin-Sandrow syndrome, MIM# 135750; Polydactyly, preaxial type II 174500; Triphalangeal thumb, type I, MIM# 174500; Syndactyly, type IV, MIM# 186200; Acheiropody, MIM# 200500; Triphalangeal thumb-polysyndactyly syndrome, MIM# 174500; Hypoplastic or aplastic tibia with polydactyly, MIM# 188740
Mendeliome v0.13931 LMBR1 Alison Yeung Mode of inheritance for gene: LMBR1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13930 LMBR1 Alison Yeung reviewed gene: LMBR1: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Laurin-Sandrow syndrome, MIM# 135750, Polydactyly, preaxial type II 174500, Triphalangeal thumb, type I, MIM# 174500, Syndactyly, type IV, MIM# 186200, Acheiropody, MIM# 200500, Triphalangeal thumb-polysyndactyly syndrome, MIM# 174500, Hypoplastic or aplastic tibia with polydactyly, MIM# 188740; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13930 SLC17A3 Samantha Ayres reviewed gene: SLC17A3: Rating: RED; Mode of pathogenicity: None; Publications: 34290818, 20810651; Phenotypes: [Uric acid concentration, serum, QTL4], MIM# 612671, {Gout susceptibility 4}, MIM#612671; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13930 SLC22A5 Manny Jacobs reviewed gene: SLC22A5: Rating: GREEN; Mode of pathogenicity: None; Publications: 9916797, 10072434, 10051646, 10425211, 10480371, 10679939, 9837751, 23379544, 31399326; Phenotypes: Carnitine deficiency, systemic primary, MIM# 212140, MONDO:0008919; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13930 CYP27B1 Ain Roesley Marked gene: CYP27B1 as ready
Mendeliome v0.13930 CYP27B1 Ain Roesley Gene: cyp27b1 has been classified as Green List (High Evidence).
Mendeliome v0.13930 CYP27B1 Ain Roesley Phenotypes for gene: CYP27B1 were changed from to Vitamin D-dependent rickets, type I MIM#264700
Mendeliome v0.13929 CYP27B1 Ain Roesley Publications for gene: CYP27B1 were set to
Mendeliome v0.13929 CYP27B1 Ain Roesley Mode of inheritance for gene: CYP27B1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13928 CYP27B1 Ain Roesley reviewed gene: CYP27B1: Rating: GREEN; Mode of pathogenicity: None; Publications: 9486994, 9415400, 12050193, 27473561, 34492747, 33823104; Phenotypes: Vitamin D-dependent rickets, type I MIM#264700; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13928 CYP51A1 Ain Roesley Marked gene: CYP51A1 as ready
Mendeliome v0.13928 CYP51A1 Ain Roesley Gene: cyp51a1 has been classified as Green List (High Evidence).
Mendeliome v0.13928 CYP51A1 Ain Roesley Phenotypes for gene: CYP51A1 were changed from to congenital cataract-severe neonatal hepatopathy-global developmental delay syndrome MONDO#0033853
Mendeliome v0.13927 CYP51A1 Ain Roesley Publications for gene: CYP51A1 were set to
Mendeliome v0.13926 CYP4V2 Ain Roesley Marked gene: CYP4V2 as ready
Mendeliome v0.13926 CYP4V2 Ain Roesley Gene: cyp4v2 has been classified as Green List (High Evidence).
Mendeliome v0.13926 CYP4V2 Ain Roesley Phenotypes for gene: CYP4V2 were changed from to Bietti crystalline corneoretinal dystrophy, MIM# 210370
Mendeliome v0.13925 CYP4V2 Ain Roesley Publications for gene: CYP4V2 were set to
Mendeliome v0.13925 CYP4V2 Ain Roesley Mode of inheritance for gene: CYP4V2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13924 CYP4V2 Ain Roesley reviewed gene: CYP4V2: Rating: GREEN; Mode of pathogenicity: None; Publications: 15042513, 22497028; Phenotypes: Bietti crystalline corneoretinal dystrophy, MIM# 210370; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13924 CYP2R1 Ain Roesley Marked gene: CYP2R1 as ready
Mendeliome v0.13924 CYP2R1 Ain Roesley Gene: cyp2r1 has been classified as Green List (High Evidence).
Mendeliome v0.13924 CYP2R1 Ain Roesley Publications for gene: CYP2R1 were set to 15128933; 28548312
Mendeliome v0.13923 CYP2R1 Ain Roesley Phenotypes for gene: CYP2R1 were changed from to Rickets due to defect in vitamin D 25-hydroxylation deficiency MIM#600081
Mendeliome v0.13923 CYP2R1 Ain Roesley Publications for gene: CYP2R1 were set to
Mendeliome v0.13923 CYP2R1 Ain Roesley Mode of inheritance for gene: CYP2R1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13922 CYP2R1 Ain Roesley reviewed gene: CYP2R1: Rating: GREEN; Mode of pathogenicity: None; Publications: 15128933, 28548312; Phenotypes: Rickets due to defect in vitamin D 25-hydroxylation deficiency MIM#600081; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13922 CYP2D6 Ain Roesley Marked gene: CYP2D6 as ready
Mendeliome v0.13922 CYP2D6 Ain Roesley Gene: cyp2d6 has been classified as Red List (Low Evidence).
Mendeliome v0.13922 CYP2D6 Ain Roesley Phenotypes for gene: CYP2D6 were changed from to {Codeine sensitivity} MIM#608902; {Debrisoquine sensitivity} MIM#608902
Mendeliome v0.13921 CYP2D6 Ain Roesley Publications for gene: CYP2D6 were set to
Mendeliome v0.13921 CYP2D6 Ain Roesley Classified gene: CYP2D6 as Red List (low evidence)
Mendeliome v0.13921 CYP2D6 Ain Roesley Gene: cyp2d6 has been classified as Red List (Low Evidence).
Mendeliome v0.13920 CYP2D6 Ain Roesley reviewed gene: CYP2D6: Rating: RED; Mode of pathogenicity: None; Publications: 18406467, 24458010; Phenotypes: {Codeine sensitivity} MIM#608902, {Debrisoquine sensitivity} MIM#608902; Mode of inheritance: None; Current diagnostic: yes
Mendeliome v0.13920 CYP2C19 Ain Roesley Classified gene: CYP2C19 as Red List (low evidence)
Mendeliome v0.13920 CYP2C19 Ain Roesley Gene: cyp2c19 has been classified as Red List (Low Evidence).
Mendeliome v0.13919 CYP2C19 Ain Roesley edited their review of gene: CYP2C19: Changed rating: RED
Mendeliome v0.13919 CYP2C19 Ain Roesley changed review comment from: Voriconazole: Improved time to target concentration with genotype directed dosing (PMID 26616742), reduced underexposure (PMID: 31549389) (PMID 31549386)

(PMID:27981572)
Voriconazole, moderate strength.
Poor metabolizer: "Higher dose-adjusted trough concentrations of voriconazole and
may increase probability of adverse events."
Ultrarapid metabolizer: "probability of attainment of therapeutic voriconazole concentrations is small with standard dosing."; to: Pharmacogenomics gene

Voriconazole: Improved time to target concentration with genotype directed dosing (PMID 26616742), reduced underexposure (PMID: 31549389) (PMID 31549386)

(PMID:27981572)
Voriconazole, moderate strength.
Poor metabolizer: "Higher dose-adjusted trough concentrations of voriconazole and
may increase probability of adverse events."
Ultrarapid metabolizer: "probability of attainment of therapeutic voriconazole concentrations is small with standard dosing."
Mendeliome v0.13919 DGUOK Zornitza Stark Marked gene: DGUOK as ready
Mendeliome v0.13919 DGUOK Zornitza Stark Gene: dguok has been classified as Green List (High Evidence).
Mendeliome v0.13919 DGUOK Zornitza Stark Phenotypes for gene: DGUOK were changed from to Mitochondrial DNA depletion syndrome 3 (hepatocerebral type), MIM# 251880; Portal hypertension, noncirrhotic, 1, MIM# 617068; Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 4, MIM# 617070
Mendeliome v0.13918 DGUOK Zornitza Stark Publications for gene: DGUOK were set to
Mendeliome v0.13917 DGUOK Zornitza Stark Mode of inheritance for gene: DGUOK was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13916 DGUOK Zornitza Stark reviewed gene: DGUOK: Rating: GREEN; Mode of pathogenicity: None; Publications: 11687800, 12874104, 15887277, 23043144, 26874653; Phenotypes: Mitochondrial DNA depletion syndrome 3 (hepatocerebral type), MIM# 251880, Portal hypertension, noncirrhotic, 1, MIM# 617068, Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 4, MIM# 617070; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Proteinuria v0.197 DGKE Zornitza Stark Marked gene: DGKE as ready
Proteinuria v0.197 DGKE Zornitza Stark Gene: dgke has been classified as Green List (High Evidence).
Proteinuria v0.197 DGKE Zornitza Stark Phenotypes for gene: DGKE were changed from to Nephrotic syndrome, type 7, MIM# 615008
Proteinuria v0.196 DGKE Zornitza Stark Publications for gene: DGKE were set to
Proteinuria v0.195 DGKE Zornitza Stark Mode of inheritance for gene: DGKE was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Proteinuria v0.194 DGKE Zornitza Stark reviewed gene: DGKE: Rating: GREEN; Mode of pathogenicity: None; Publications: 23274426, 23542698; Phenotypes: Nephrotic syndrome, type 7, MIM# 615008; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13916 DGKE Zornitza Stark Marked gene: DGKE as ready
Mendeliome v0.13916 DGKE Zornitza Stark Gene: dgke has been classified as Green List (High Evidence).
Mendeliome v0.13916 DGKE Zornitza Stark Phenotypes for gene: DGKE were changed from to Nephrotic syndrome, type 7, MIM# 615008
Mendeliome v0.13915 DGKE Zornitza Stark Publications for gene: DGKE were set to
Mendeliome v0.13914 DGKE Zornitza Stark Mode of inheritance for gene: DGKE was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13913 DGKE Zornitza Stark reviewed gene: DGKE: Rating: GREEN; Mode of pathogenicity: None; Publications: 23274426, 23542698; Phenotypes: Nephrotic syndrome, type 7, MIM# 615008; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13913 DES Zornitza Stark Marked gene: DES as ready
Mendeliome v0.13913 DES Zornitza Stark Gene: des has been classified as Green List (High Evidence).
Mendeliome v0.13913 DES Zornitza Stark Phenotypes for gene: DES were changed from to Cardiomyopathy, dilated, 1I, MIM# 604765; Myopathy, myofibrillar, 1 , MIM#601419; Arrhythmogenic right ventricular cardiomyopathy
Mendeliome v0.13912 DES Zornitza Stark Publications for gene: DES were set to
Mendeliome v0.13911 DES Zornitza Stark reviewed gene: DES: Rating: GREEN; Mode of pathogenicity: None; Publications: 20718792, 19879535, 20423733, 24200904, 22395865, 29212896, 23168288, 20829228, 10430757, 11728149, 17325244, 23300193, 31514951, 26724190, 23349452, 25557463, 33947203; Phenotypes: Cardiomyopathy, dilated, 1I, MIM# 604765, Myopathy, myofibrillar, 1 , MIM#601419, Arrhythmogenic right ventricular cardiomyopathy; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4762 DEPDC5 Zornitza Stark Marked gene: DEPDC5 as ready
Intellectual disability syndromic and non-syndromic v0.4762 DEPDC5 Zornitza Stark Gene: depdc5 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4762 DEPDC5 Zornitza Stark Phenotypes for gene: DEPDC5 were changed from to Epilepsy, familial focal, with variable foci 1, MIM#604364
Intellectual disability syndromic and non-syndromic v0.4761 DEPDC5 Zornitza Stark Publications for gene: DEPDC5 were set to
Intellectual disability syndromic and non-syndromic v0.4760 DEPDC5 Zornitza Stark Mode of inheritance for gene: DEPDC5 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Intellectual disability syndromic and non-syndromic v0.4759 DEPDC5 Zornitza Stark reviewed gene: DEPDC5: Rating: GREEN; Mode of pathogenicity: None; Publications: 31444548, 23542697, 23542701; Phenotypes: Epilepsy, familial focal, with variable foci 1, MIM#604364; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Genetic Epilepsy v0.1595 DEPDC5 Zornitza Stark Marked gene: DEPDC5 as ready
Genetic Epilepsy v0.1595 DEPDC5 Zornitza Stark Gene: depdc5 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1595 DEPDC5 Zornitza Stark Phenotypes for gene: DEPDC5 were changed from to Epilepsy, familial focal, with variable foci 1 MIM#604364
Genetic Epilepsy v0.1594 DEPDC5 Zornitza Stark Publications for gene: DEPDC5 were set to
Genetic Epilepsy v0.1593 DEPDC5 Zornitza Stark Mode of inheritance for gene: DEPDC5 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Genetic Epilepsy v0.1592 DEPDC5 Zornitza Stark reviewed gene: DEPDC5: Rating: GREEN; Mode of pathogenicity: None; Publications: 31444548, 23542697, 23542701; Phenotypes: Epilepsy, familial focal, with variable foci 1 MIM#604364; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13911 DEPDC5 Zornitza Stark Marked gene: DEPDC5 as ready
Mendeliome v0.13911 DEPDC5 Zornitza Stark Gene: depdc5 has been classified as Green List (High Evidence).
Mendeliome v0.13911 DEPDC5 Zornitza Stark Phenotypes for gene: DEPDC5 were changed from to Epilepsy, familial focal, with variable foci 1, MIM#604364
Mendeliome v0.13910 DEPDC5 Zornitza Stark Publications for gene: DEPDC5 were set to
Mendeliome v0.13909 DEPDC5 Zornitza Stark Mode of inheritance for gene: DEPDC5 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13908 DEPDC5 Zornitza Stark reviewed gene: DEPDC5: Rating: GREEN; Mode of pathogenicity: None; Publications: 31444548, 23542697, 23542701; Phenotypes: Epilepsy, familial focal, with variable foci 1 MIM#604364; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13908 DECR1 Zornitza Stark Marked gene: DECR1 as ready
Mendeliome v0.13908 DECR1 Zornitza Stark Gene: decr1 has been classified as Red List (Low Evidence).
Mendeliome v0.13908 DECR1 Zornitza Stark Classified gene: DECR1 as Red List (low evidence)
Mendeliome v0.13908 DECR1 Zornitza Stark Gene: decr1 has been classified as Red List (Low Evidence).
Mendeliome v0.13907 DECR1 Zornitza Stark reviewed gene: DECR1: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13907 DDIT3 Zornitza Stark Marked gene: DDIT3 as ready
Mendeliome v0.13907 DDIT3 Zornitza Stark Gene: ddit3 has been classified as Red List (Low Evidence).
Mendeliome v0.13907 DDIT3 Zornitza Stark Classified gene: DDIT3 as Red List (low evidence)
Mendeliome v0.13907 DDIT3 Zornitza Stark Gene: ddit3 has been classified as Red List (Low Evidence).
Mendeliome v0.13906 DDIT3 Zornitza Stark reviewed gene: DDIT3: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13906 DDHD2 Zornitza Stark Marked gene: DDHD2 as ready
Mendeliome v0.13906 DDHD2 Zornitza Stark Gene: ddhd2 has been classified as Green List (High Evidence).
Mendeliome v0.13906 DDHD2 Zornitza Stark Phenotypes for gene: DDHD2 were changed from to Spastic paraplegia 54, autosomal recessive, MIM# 615033
Mendeliome v0.13905 DDHD2 Zornitza Stark Publications for gene: DDHD2 were set to
Mendeliome v0.13904 DDHD2 Zornitza Stark Mode of inheritance for gene: DDHD2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13903 DDHD2 Zornitza Stark reviewed gene: DDHD2: Rating: GREEN; Mode of pathogenicity: None; Publications: 23486545, 24482476, 23176823, 31302745; Phenotypes: Spastic paraplegia 54, autosomal recessive, MIM# 615033; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13903 DDC Zornitza Stark Marked gene: DDC as ready
Mendeliome v0.13903 DDC Zornitza Stark Gene: ddc has been classified as Green List (High Evidence).
Mendeliome v0.13903 DDC Zornitza Stark Phenotypes for gene: DDC were changed from to Aromatic L-amino acid decarboxylase deficiency, MIM# 608643
Mendeliome v0.13902 DDC Zornitza Stark Publications for gene: DDC were set to
Mendeliome v0.13901 DDC Zornitza Stark Mode of inheritance for gene: DDC was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13900 DDC Zornitza Stark reviewed gene: DDC: Rating: GREEN; Mode of pathogenicity: None; Publications: 20505134, 30952622; Phenotypes: Aromatic L-amino acid decarboxylase deficiency, MIM# 608643; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13900 DDB2 Zornitza Stark Marked gene: DDB2 as ready
Mendeliome v0.13900 DDB2 Zornitza Stark Gene: ddb2 has been classified as Green List (High Evidence).
Mendeliome v0.13900 DDB2 Zornitza Stark Phenotypes for gene: DDB2 were changed from to Xeroderma pigmentosum, group E, DDB-negative subtype, MIM# 278740
Mendeliome v0.13899 DDB2 Zornitza Stark Publications for gene: DDB2 were set to
Mendeliome v0.13898 AQP3 Elena Savva Publications for gene: AQP3 were set to
Mendeliome v0.13897 AQP3 Elena Savva Mode of inheritance for gene: AQP3 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13897 AQP3 Elena Savva Classified gene: AQP3 as Amber List (moderate evidence)
Mendeliome v0.13897 AQP3 Elena Savva Gene: aqp3 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13896 AQP3 Elena Savva reviewed gene: AQP3: Rating: AMBER; Mode of pathogenicity: None; Publications: PMID: 10737773, 12239222; Phenotypes: [Blood group GIL] MIM#607457; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13896 DDB2 Zornitza Stark Mode of inheritance for gene: DDB2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13895 DDB2 Zornitza Stark reviewed gene: DDB2: Rating: GREEN; Mode of pathogenicity: None; Publications: 33276309, 32530099, 32239545, 32228487; Phenotypes: Xeroderma pigmentosum, group E, DDB-negative subtype, MIM# 278740; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13895 DCTN1 Zornitza Stark Marked gene: DCTN1 as ready
Mendeliome v0.13895 DCTN1 Zornitza Stark Gene: dctn1 has been classified as Green List (High Evidence).
Mendeliome v0.13895 DCTN1 Zornitza Stark Phenotypes for gene: DCTN1 were changed from to Neuronopathy, distal hereditary motor, type VIIB, MIM# 607641; MONDO:0011879; Perry syndrome, MIM# 168605
Mendeliome v0.13894 DCTN1 Zornitza Stark Publications for gene: DCTN1 were set to
Mendeliome v0.13893 DCTN1 Zornitza Stark Mode of inheritance for gene: DCTN1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13892 DCTN1 Zornitza Stark edited their review of gene: DCTN1: Changed phenotypes: Neuronopathy, distal hereditary motor, type VIIB, MIM# 607641, MONDO:0011879, Perry syndrome, MIM# 168605
Mendeliome v0.13892 AQP5 Elena Savva Publications for gene: AQP5 were set to PMID: 35014096; 23830519
Mendeliome v0.13892 AQP5 Elena Savva Phenotypes for gene: AQP5 were changed from Palmoplantar keratoderma, Bothnian type MIM#600231 to Palmoplantar keratoderma, Bothnian type MIM#600231
Mendeliome v0.13891 AQP5 Elena Savva Publications for gene: AQP5 were set to
Mendeliome v0.13892 AQP5 Elena Savva Phenotypes for gene: AQP5 were changed from to Palmoplantar keratoderma, Bothnian type MIM#600231
Mendeliome v0.13891 AQP5 Elena Savva Marked gene: AQP5 as ready
Mendeliome v0.13891 AQP5 Elena Savva Gene: aqp5 has been classified as Green List (High Evidence).
Mendeliome v0.13891 AQP5 Elena Savva Mode of inheritance for gene: AQP5 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13890 AQP5 Elena Savva reviewed gene: AQP5: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 35014096, 23830519; Phenotypes: Palmoplantar keratoderma, Bothnian type MIM#600231; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13890 AR Elena Savva Phenotypes for gene: AR were changed from to Hypospadias 1, X-linked MIM#30063; Androgen insensitivity MIM#300068; Androgen insensitivity, partial, with or without breast cancer MIM#312300; Spinal and bulbar muscular atrophy of Kennedy MIM#313200
Mendeliome v0.13890 AR Elena Savva Publications for gene: AR were set to
Mendeliome v0.13889 AR Elena Savva Mode of inheritance for gene: AR was changed from Unknown to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.13888 AR Elena Savva reviewed gene: AR: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 22334387; Phenotypes: Hypospadias 1, X-linked MIM#30063, Androgen insensitivity MIM#300068, Androgen insensitivity, partial, with or without breast cancer MIM#312300, Spinal and bulbar muscular atrophy of Kennedy MIM#313200; Mode of inheritance: X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.13888 DCLRE1C Zornitza Stark Marked gene: DCLRE1C as ready
Mendeliome v0.13888 DCLRE1C Zornitza Stark Gene: dclre1c has been classified as Green List (High Evidence).
Mendeliome v0.13888 DCLRE1C Zornitza Stark Phenotypes for gene: DCLRE1C were changed from to Severe combined immunodeficiency, Athabascan type MIM# 602450; Omenn syndrome, MIM# 603554
Mendeliome v0.13887 DCLRE1C Zornitza Stark Publications for gene: DCLRE1C were set to
Mendeliome v0.13886 DCLRE1C Zornitza Stark Mode of inheritance for gene: DCLRE1C was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13885 DCLRE1C Zornitza Stark reviewed gene: DCLRE1C: Rating: GREEN; Mode of pathogenicity: None; Publications: 19953608, 15699179, 12055248, 34220820; Phenotypes: Severe combined immunodeficiency, Athabascan type MIM# 602450, Omenn syndrome, MIM# 603554; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13885 ARCN1 Elena Savva Marked gene: ARCN1 as ready
Mendeliome v0.13885 ARCN1 Elena Savva Gene: arcn1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4759 DCHS1 Zornitza Stark Marked gene: DCHS1 as ready
Intellectual disability syndromic and non-syndromic v0.4759 DCHS1 Zornitza Stark Gene: dchs1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4759 DCHS1 Zornitza Stark Phenotypes for gene: DCHS1 were changed from to Van Maldergem syndrome 1, MIM# 601390
Intellectual disability syndromic and non-syndromic v0.4758 DCHS1 Zornitza Stark Publications for gene: DCHS1 were set to
Intellectual disability syndromic and non-syndromic v0.4757 DCHS1 Zornitza Stark Mode of inheritance for gene: DCHS1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13885 APPL1 Elena Savva Phenotypes for gene: APPL1 were changed from Maturity-onset diabetes of the young, type 14 MIM#616511 to Maturity-onset diabetes of the young, type 14 MIM#616511
Mendeliome v0.13885 APPL1 Elena Savva Phenotypes for gene: APPL1 were changed from Maturity-onset diabetes of the young, type 14 MIM#616511 to Maturity-onset diabetes of the young, type 14 MIM#616511
Intellectual disability syndromic and non-syndromic v0.4756 DCHS1 Zornitza Stark reviewed gene: DCHS1: Rating: GREEN; Mode of pathogenicity: None; Publications: 27262615, 22473091, 24056717, 29046692; Phenotypes: Van Maldergem syndrome 1, MIM# 601390; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13884 DCHS1 Zornitza Stark Marked gene: DCHS1 as ready
Mendeliome v0.13884 DCHS1 Zornitza Stark Gene: dchs1 has been classified as Green List (High Evidence).
Mendeliome v0.13884 DCHS1 Zornitza Stark Phenotypes for gene: DCHS1 were changed from to Van Maldergem syndrome 1, MIM# 601390
Mendeliome v0.13883 DCHS1 Zornitza Stark Publications for gene: DCHS1 were set to
Mendeliome v0.13882 DCHS1 Zornitza Stark Mode of inheritance for gene: DCHS1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13881 APPL1 Elena Savva Mode of inheritance for gene: APPL1 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13881 DCHS1 Zornitza Stark reviewed gene: DCHS1: Rating: GREEN; Mode of pathogenicity: None; Publications: 27262615, 22473091, 24056717, 29046692; Phenotypes: Van Maldergem syndrome 1, MIM# 601390; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13881 APPL1 Elena Savva Classified gene: APPL1 as Amber List (moderate evidence)
Mendeliome v0.13881 APPL1 Elena Savva Gene: appl1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13880 APPL1 Elena Savva Phenotypes for gene: APPL1 were changed from to Maturity-onset diabetes of the young, type 14 MIM#616511
Mendeliome v0.13880 APPL1 Elena Savva Publications for gene: APPL1 were set to
Mendeliome v0.13880 APPL1 Elena Savva Mode of inheritance for gene: APPL1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13880 APPL1 Elena Savva Classified gene: APPL1 as Amber List (moderate evidence)
Mendeliome v0.13880 APPL1 Elena Savva Gene: appl1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13879 APPL1 Elena Savva Marked gene: APPL1 as ready
Mendeliome v0.13879 APPL1 Elena Savva Gene: appl1 has been classified as Green List (High Evidence).
Mendeliome v0.13879 AQP1 Elena Savva Phenotypes for gene: AQP1 were changed from Pulmonary arterial hypertension to Pulmonary arterial hypertension
Mendeliome v0.13879 AQP1 Elena Savva Publications for gene: AQP1 were set to PMID:22683574; 29650961
Mendeliome v0.13878 APRT Elena Savva Marked gene: APRT as ready
Mendeliome v0.13878 APRT Elena Savva Gene: aprt has been classified as Green List (High Evidence).
Mendeliome v0.13878 AQP1 Elena Savva Phenotypes for gene: AQP1 were changed from to Pulmonary arterial hypertension
Mendeliome v0.13877 AQP1 Elena Savva Publications for gene: AQP1 were set to
Mendeliome v0.13877 AQP1 Elena Savva Marked gene: AQP1 as ready
Mendeliome v0.13877 AQP1 Elena Savva Gene: aqp1 has been classified as Green List (High Evidence).
Mendeliome v0.13877 AQP1 Elena Savva Mode of inheritance for gene: AQP1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13876 APRT Elena Savva Phenotypes for gene: APRT were changed from to Adenine phosphoribosyltransferase deficiency MIM#614723
Mendeliome v0.13875 AQP1 Elena Savva reviewed gene: AQP1: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID:22683574, 29650961; Phenotypes: Pulmonary arterial hypertension; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13875 APRT Elena Savva Publications for gene: APRT were set to
Mendeliome v0.13874 APRT Elena Savva Mode of inheritance for gene: APRT was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13873 APOC4-APOC2 Elena Savva Marked gene: APOC4-APOC2 as ready
Mendeliome v0.13873 APOC4-APOC2 Elena Savva Gene: apoc4-apoc2 has been classified as Red List (Low Evidence).
Mendeliome v0.13873 APOC4-APOC2 Elena Savva Publications for gene: APOC4-APOC2 were set to
Mendeliome v0.13873 APOC4-APOC2 Elena Savva Classified gene: APOC4-APOC2 as Red List (low evidence)
Mendeliome v0.13873 APOC4-APOC2 Elena Savva Gene: apoc4-apoc2 has been classified as Red List (Low Evidence).
Mendeliome v0.13872 APRT Elena Savva reviewed gene: APRT: Rating: GREEN; Mode of pathogenicity: None; Publications: PubMed: 3680503, 2227934, 7915931, 1353080; Phenotypes: Adenine phosphoribosyltransferase deficiency MIM#614723; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13872 APOC2 Elena Savva Phenotypes for gene: APOC2 were changed from Hyperlipoproteinemia, type Ib MIM#207750 to Hyperlipoproteinemia, type Ib MIM#207750
Mendeliome v0.13871 APOC4-APOC2 Elena Savva reviewed gene: APOC4-APOC2: Rating: RED; Mode of pathogenicity: None; Publications: PMID: 31034468; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13871 APOC2 Elena Savva Phenotypes for gene: APOC2 were changed from to Hyperlipoproteinemia, type Ib MIM#207750
Mendeliome v0.13870 APOC2 Elena Savva Marked gene: APOC2 as ready
Mendeliome v0.13870 APOC2 Elena Savva Gene: apoc2 has been classified as Green List (High Evidence).
Mendeliome v0.13870 APOC3 Elena Savva Publications for gene: APOC3 were set to PMID: 19074352
Mendeliome v0.13869 APOC2 Elena Savva Publications for gene: APOC2 were set to
Mendeliome v0.13869 APOC2 Elena Savva Mode of inheritance for gene: APOC2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Dyslipidaemia v0.34 APOC2 Elena Savva Phenotypes for gene: APOC2 were changed from Hyperlipoproteinemia, type Ib MIM#207750 to Hyperlipoproteinemia, type Ib MIM#207750
Dyslipidaemia v0.33 APOC2 Elena Savva Phenotypes for gene: APOC2 were changed from Hyperlipoproteinemia, type Ib to Hyperlipoproteinemia, type Ib MIM#207750
Dyslipidaemia v0.32 APOC2 Elena Savva Marked gene: APOC2 as ready
Dyslipidaemia v0.32 APOC2 Elena Savva Gene: apoc2 has been classified as Green List (High Evidence).
Dyslipidaemia v0.32 APOC2 Elena Savva Publications for gene: APOC2 were set to
Mendeliome v0.13868 APOC2 Elena Savva reviewed gene: APOC2: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 32562799, 26044956, 32292609, 32280258; Phenotypes: Hyperlipoproteinemia, type Ib MIM#207750; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Dyslipidaemia v0.31 APOC2 Elena Savva reviewed gene: APOC2: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 32562799, 26044956, 32292609, 32280258; Phenotypes: Hyperlipoproteinemia, type Ib MIM#207750; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13868 APOC3 Elena Savva Publications for gene: APOC3 were set to
Mendeliome v0.13868 APOC3 Elena Savva Marked gene: APOC3 as ready
Mendeliome v0.13868 APOC3 Elena Savva Gene: apoc3 has been classified as Red List (Low Evidence).
Mendeliome v0.13868 APOC3 Elena Savva Phenotypes for gene: APOC3 were changed from to Apolipoprotein C-III deficiency MIM#614028
Mendeliome v0.13867 APOC3 Elena Savva Mode of inheritance for gene: APOC3 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13866 APOC3 Elena Savva Classified gene: APOC3 as Red List (low evidence)
Mendeliome v0.13866 APOC3 Elena Savva Gene: apoc3 has been classified as Red List (Low Evidence).
Dyslipidaemia v0.31 APOC3 Elena Savva changed review comment from: PMID: 19074352 - p.19* is found at 5% frequency within the Old Amish subpopulation with lower fasting and postprandial serum triglycerides, higher levels of HDL-cholesterol and lower levels of LDL-cholesterol.
Currently in ClinVar as 1x path, 2x likely benign (most recent)

ClinVar: 2 missense variants, submissions >30 years old.; to: PMID: 19074352 - p.19* is found at 5% frequency within the Old Amish subpopulation with lower fasting and postprandial serum triglycerides, higher levels of HDL-cholesterol and lower levels of LDL-cholesterol.
Currently in ClinVar as 1x path, 2x likely benign (most recent)

ClinVar: 2 missense variants, submissions >30 years old.
Dyslipidaemia v0.31 APOC3 Elena Savva Marked gene: APOC3 as ready
Dyslipidaemia v0.31 APOC3 Elena Savva Gene: apoc3 has been classified as Red List (Low Evidence).
Dyslipidaemia v0.31 APOC3 Elena Savva Phenotypes for gene: APOC3 were changed from Apolipoprotein C-III deficiency to Apolipoprotein C-III deficiency MIM#614028
Dyslipidaemia v0.30 APOC3 Elena Savva Publications for gene: APOC3 were set to
Dyslipidaemia v0.30 APOC3 Elena Savva Classified gene: APOC3 as Red List (low evidence)
Dyslipidaemia v0.30 APOC3 Elena Savva Gene: apoc3 has been classified as Red List (Low Evidence).
Mendeliome v0.13865 APOC3 Elena Savva reviewed gene: APOC3: Rating: RED; Mode of pathogenicity: None; Publications: PMID: 19074352; Phenotypes: Apolipoprotein C-III deficiency MIM#614028; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Dyslipidaemia v0.29 APOC3 Elena Savva reviewed gene: APOC3: Rating: RED; Mode of pathogenicity: None; Publications: PMID: 19074352; Phenotypes: PMID: 19074352; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13865 ANXA5 Elena Savva reviewed gene: ANXA5: Rating: AMBER; Mode of pathogenicity: None; Publications: PMID: 17339269, 12665588, 34878150; Phenotypes: {Pregnancy loss, recurrent, susceptibility to, 3} MIM#614391; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Intellectual disability syndromic and non-syndromic v0.4756 ACTL6B Zornitza Stark Mode of inheritance for gene: ACTL6B was changed from BIALLELIC, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4755 ACTL6B Zornitza Stark edited their review of gene: ACTL6B: Changed phenotypes: Epileptic encephalopathy, early infantile, 76, MIM# 618468, Intellectual developmental disorder with severe speech and ambulation defects, MIM# 618470; Changed mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Genetic Epilepsy v0.1592 ACTL6B Zornitza Stark Mode of inheritance for gene: ACTL6B was changed from BIALLELIC, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Genetic Epilepsy v0.1591 ACTL6B Zornitza Stark edited their review of gene: ACTL6B: Changed phenotypes: Epileptic encephalopathy, early infantile, 76, MIM# 618468, Intellectual developmental disorder with severe speech and ambulation defects, MIM# 618470; Changed mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13865 ACTL6B Zornitza Stark Mode of inheritance for gene: ACTL6B was changed from BIALLELIC, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Angelman Rett like syndromes v1.2 ACTL6B Zornitza Stark Mode of inheritance for gene: ACTL6B was changed from BIALLELIC, autosomal or pseudoautosomal to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Angelman Rett like syndromes v1.1 ACTL6B Zornitza Stark edited their review of gene: ACTL6B: Changed phenotypes: Intellectual developmental disorder with severe speech and ambulation defects, MIM# 618470; Changed mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13864 ACTL6B Zornitza Stark edited their review of gene: ACTL6B: Changed phenotypes: Epileptic encephalopathy, early infantile, 76, MIM# 618468, Intellectual developmental disorder with severe speech and ambulation defects, MIM# 618470; Changed mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Additional findings_Paediatric v0.269 CCDC50 Zornitza Stark Phenotypes for gene: CCDC50 were changed from childhood onset deafness, progressive to Deafness, autosomal dominant 44 , MIM# 607453
Additional findings_Paediatric v0.268 CCDC50 Zornitza Stark Publications for gene: CCDC50 were set to
Additional findings_Paediatric v0.267 CCDC50 Zornitza Stark Classified gene: CCDC50 as Red List (low evidence)
Additional findings_Paediatric v0.267 CCDC50 Zornitza Stark Gene: ccdc50 has been classified as Red List (Low Evidence).
Additional findings_Paediatric v0.266 CCDC50 Zornitza Stark reviewed gene: CCDC50: Rating: RED; Mode of pathogenicity: None; Publications: 17503326, 27911912, 24875298; Phenotypes: Deafness, autosomal dominant 44 , MIM# 607453; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Deafness_IsolatedAndComplex v1.130 CCDC50 Zornitza Stark Classified gene: CCDC50 as Amber List (moderate evidence)
Deafness_IsolatedAndComplex v1.130 CCDC50 Zornitza Stark Gene: ccdc50 has been classified as Amber List (Moderate Evidence).
Deafness_IsolatedAndComplex v1.129 CCDC50 Zornitza Stark edited their review of gene: CCDC50: Added comment: PMID 24875298 reviewed: Segregation in 4 individuals in one family with deafness. However, p.Arg76His is present in 75 hets in gnomad.; Changed rating: AMBER; Changed publications: 24875298; Changed phenotypes: Deafness, autosomal dominant 44 , MIM# 607453; Changed mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13864 CCDC50 Zornitza Stark Publications for gene: CCDC50 were set to 17503326; 27911912
Mendeliome v0.13863 CCDC50 Zornitza Stark Classified gene: CCDC50 as Amber List (moderate evidence)
Mendeliome v0.13863 CCDC50 Zornitza Stark Gene: ccdc50 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13862 CCDC50 Zornitza Stark reviewed gene: CCDC50: Rating: AMBER; Mode of pathogenicity: None; Publications: 17503326, 27911912, 24875298; Phenotypes: Deafness, autosomal dominant 44 MIM#607453; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Deafness_Isolated v1.28 CCDC50 Zornitza Stark Classified gene: CCDC50 as Amber List (moderate evidence)
Deafness_Isolated v1.28 CCDC50 Zornitza Stark Gene: ccdc50 has been classified as Amber List (Moderate Evidence).
Deafness_Isolated v1.27 CCDC50 Zornitza Stark changed review comment from: PMID 24875298: Segregation in 4 individuals. However, p.Arg76His is present in 75 hets in gnomad.; to: PMID 24875298 reviewed: Segregation in 4 individuals in one family with deafness. However, p.Arg76His is present in 75 hets in gnomad.
Deafness_Isolated v1.27 CCDC50 Zornitza Stark edited their review of gene: CCDC50: Added comment: PMID 24875298: Segregation in 4 individuals. However, p.Arg76His is present in 75 hets in gnomad.; Changed rating: AMBER; Changed publications: 24875298; Changed phenotypes: Deafness, autosomal dominant 44 , MIM# 607453; Changed mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Fetal anomalies v1.25 MAPKAPK5 Zornitza Stark Phenotypes for gene: MAPKAPK5 were changed from Developmental delay, variable brain anomalies, congenital heart defects, dysmorphic to Neurocardiofaciodigital syndrome, MIM# 619869
Fetal anomalies v1.24 MAPKAPK5 Zornitza Stark edited their review of gene: MAPKAPK5: Changed phenotypes: Neurocardiofaciodigital syndrome, MIM# 619869
Polydactyly v0.254 MAPKAPK5 Zornitza Stark Phenotypes for gene: MAPKAPK5 were changed from Developmental delay, variable brain anomalies, congenital heart defects, dysmorphic to Neurocardiofaciodigital syndrome, MIM# 619869
Polydactyly v0.253 MAPKAPK5 Zornitza Stark edited their review of gene: MAPKAPK5: Changed phenotypes: Neurocardiofaciodigital syndrome, MIM# 619869
Mendeliome v0.13862 MAPKAPK5 Zornitza Stark Phenotypes for gene: MAPKAPK5 were changed from Developmental delay, variable brain anomalies, congenital heart defects, dysmorphic to Neurocardiofaciodigital syndrome, MIM# 619869
Mendeliome v0.13861 MAPKAPK5 Zornitza Stark edited their review of gene: MAPKAPK5: Changed phenotypes: Neurocardiofaciodigital syndrome, MIM# 619869
Congenital Heart Defect v0.213 MAPKAPK5 Zornitza Stark Phenotypes for gene: MAPKAPK5 were changed from Developmental delay, variable brain anomalies, congenital heart defects, dysmorphic to Neurocardiofaciodigital syndrome, MIM# 619869
Congenital Heart Defect v0.212 MAPKAPK5 Zornitza Stark edited their review of gene: MAPKAPK5: Changed phenotypes: Neurocardiofaciodigital syndrome, MIM# 619869
Intellectual disability syndromic and non-syndromic v0.4755 MAPKAPK5 Zornitza Stark Marked gene: MAPKAPK5 as ready
Intellectual disability syndromic and non-syndromic v0.4755 MAPKAPK5 Zornitza Stark Gene: mapkapk5 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4755 MAPKAPK5 Zornitza Stark Phenotypes for gene: MAPKAPK5 were changed from Developmental delay, variable brain anomalies, congenital heart defects, dysmorphic to Neurocardiofaciodigital syndrome, MIM# 619869
Intellectual disability syndromic and non-syndromic v0.4754 MAPKAPK5 Zornitza Stark reviewed gene: MAPKAPK5: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Neurocardiofaciodigital syndrome, MIM# 619869; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Skeletal dysplasia v0.167 KCNJ2 Ain Roesley Marked gene: KCNJ2 as ready
Skeletal dysplasia v0.167 KCNJ2 Ain Roesley Gene: kcnj2 has been classified as Green List (High Evidence).
Skeletal dysplasia v0.167 KCNJ2 Ain Roesley Classified gene: KCNJ2 as Green List (high evidence)
Skeletal dysplasia v0.167 KCNJ2 Ain Roesley Gene: kcnj2 has been classified as Green List (High Evidence).
Skeletal dysplasia v0.166 KCNJ2 Ain Roesley gene: KCNJ2 was added
gene: KCNJ2 was added to Skeletal dysplasia. Sources: Literature
Mode of inheritance for gene: KCNJ2 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: KCNJ2 were set to 20301441
Phenotypes for gene: KCNJ2 were set to Andersen syndrome MIM#170390
Review for gene: KCNJ2 was set to GREEN
gene: KCNJ2 was marked as current diagnostic
Added comment: Established association.

From Genereviews:
Andersen-Tawil syndrome (ATS) is characterized by a triad of: episodic flaccid muscle weakness (i.e., periodic paralysis); ventricular arrhythmias and prolonged QT interval; and anomalies including low-set ears, widely spaced eyes, small mandible, fifth-digit clinodactyly, syndactyly, short stature, and scoliosis.
Sources: Literature
Mendeliome v0.13861 KCNJ2 Ain Roesley Publications for gene: KCNJ2 were set to
Mendeliome v0.13861 KCNJ2 Ain Roesley Mode of pathogenicity for gene: KCNJ2 was changed from Other to None
Mendeliome v0.13860 KCNJ2 Ain Roesley edited their review of gene: KCNJ2: Changed publications: 24383070
Mendeliome v0.13860 KCNJ2 Ain Roesley changed review comment from: well-established association, including short QT, long QT, clefting disorders, myopathy adult onset, channelopathies. tenuous association for CPVT

Dominant-negative is the disease mechanism; to: well-established association, including short QT, long QT, clefting disorders, myopathy adult onset, channelopathies. tenuous association for CPVT

Dominant-negative and LoF is the disease mechanism for ATS and CPVT while GoF is the mechanism for short QT
Deafness_IsolatedAndComplex v1.129 DCAF17 Zornitza Stark Marked gene: DCAF17 as ready
Deafness_IsolatedAndComplex v1.129 DCAF17 Zornitza Stark Gene: dcaf17 has been classified as Green List (High Evidence).
Deafness_IsolatedAndComplex v1.129 DCAF17 Zornitza Stark Classified gene: DCAF17 as Green List (high evidence)
Deafness_IsolatedAndComplex v1.129 DCAF17 Zornitza Stark Gene: dcaf17 has been classified as Green List (High Evidence).
Deafness_IsolatedAndComplex v1.128 DCAF17 Zornitza Stark gene: DCAF17 was added
gene: DCAF17 was added to Deafness_IsolatedAndComplex. Sources: Expert Review
Mode of inheritance for gene: DCAF17 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: DCAF17 were set to 19026396; 20507343; 35002959; 34877714; 34732557; 34590781
Phenotypes for gene: DCAF17 were set to Woodhouse-Sakati syndrome, MIM# 241080
Review for gene: DCAF17 was set to GREEN
Added comment: Woodhouse-Sakati syndrome (WSS) is a rare autosomal recessive neuroendocrine and ectodermal disorder characterised by hypogonadism and ID. In Qatar, the c.436delC variant has been reported as a possible founder pathogenic variant. Multiple families from different backgrounds reported. In a cohort of 58 individuals from Qatar reported in PMID 3459078: ectodermal and endocrine (primary hypogonadism) manifestations were the most common presentations (100%), followed by diabetes mellitus (46%) and hypothyroidism (36%). Neurological manifestations were overlapping with intellectual disability (ID) being the most common (75%), followed by sensorineural hearing loss (43%) and both ID and aggressive behaviour (10%).
Sources: Expert Review
Intellectual disability syndromic and non-syndromic v0.4754 DCAF17 Zornitza Stark Marked gene: DCAF17 as ready
Intellectual disability syndromic and non-syndromic v0.4754 DCAF17 Zornitza Stark Gene: dcaf17 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4754 DCAF17 Zornitza Stark Phenotypes for gene: DCAF17 were changed from to Woodhouse-Sakati syndrome, MIM# 241080
Intellectual disability syndromic and non-syndromic v0.4753 DCAF17 Zornitza Stark Publications for gene: DCAF17 were set to
Intellectual disability syndromic and non-syndromic v0.4752 DCAF17 Zornitza Stark Mode of inheritance for gene: DCAF17 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13860 DCAF17 Zornitza Stark Marked gene: DCAF17 as ready
Mendeliome v0.13860 DCAF17 Zornitza Stark Gene: dcaf17 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4751 DCAF17 Zornitza Stark reviewed gene: DCAF17: Rating: GREEN; Mode of pathogenicity: None; Publications: 19026396, 20507343, 35002959, 34877714, 34732557, 34590781; Phenotypes: Woodhouse-Sakati syndrome, MIM# 241080; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13860 DCAF17 Zornitza Stark Phenotypes for gene: DCAF17 were changed from to Woodhouse-Sakati syndrome, MIM# 241080
Mendeliome v0.13859 DCAF17 Zornitza Stark Publications for gene: DCAF17 were set to
Mendeliome v0.13858 DCAF17 Zornitza Stark Mode of inheritance for gene: DCAF17 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13857 DCAF17 Zornitza Stark reviewed gene: DCAF17: Rating: GREEN; Mode of pathogenicity: None; Publications: 19026396, 20507343, 35002959, 34877714, 34732557, 34590781; Phenotypes: Woodhouse-Sakati syndrome, MIM# 241080; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13857 CYP2C19 Ain Roesley Marked gene: CYP2C19 as ready
Mendeliome v0.13857 CYP2C19 Ain Roesley Gene: cyp2c19 has been classified as Green List (High Evidence).
Mendeliome v0.13857 CYP2C19 Ain Roesley Phenotypes for gene: CYP2C19 were changed from to Voriconazole
Mendeliome v0.13857 CYP2C19 Ain Roesley Publications for gene: CYP2C19 were set to
Mendeliome v0.13857 CYP2C19 Ain Roesley Mode of inheritance for gene: CYP2C19 was changed from Unknown to Other
Mendeliome v0.13856 CYP2C19 Ain Roesley reviewed gene: CYP2C19: Rating: GREEN; Mode of pathogenicity: None; Publications: 27981572, 26616742, 31549386, 31549389; Phenotypes: Voriconazole; Mode of inheritance: Other; Current diagnostic: yes
Mendeliome v0.13856 CYP2B6 Ain Roesley Marked gene: CYP2B6 as ready
Mendeliome v0.13856 CYP2B6 Ain Roesley Gene: cyp2b6 has been classified as Red List (Low Evidence).
Mendeliome v0.13856 CYP2B6 Ain Roesley Phenotypes for gene: CYP2B6 were changed from to Efavirenz, poor metabolism of MIM#614546
Mendeliome v0.13855 CYP2B6 Ain Roesley Classified gene: CYP2B6 as Red List (low evidence)
Mendeliome v0.13855 CYP2B6 Ain Roesley Gene: cyp2b6 has been classified as Red List (Low Evidence).
Mendeliome v0.13854 CYP2B6 Ain Roesley changed review comment from: No other Mendelian disease association found via punned; to: No other Mendelian disease association found via pubmed
Mendeliome v0.13854 CYP2B6 Ain Roesley reviewed gene: CYP2B6: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: Efavirenz, poor metabolism of MIM#614546; Mode of inheritance: None; Current diagnostic: yes
Mendeliome v0.13854 DAZ4 Zornitza Stark Marked gene: DAZ4 as ready
Mendeliome v0.13854 DAZ4 Zornitza Stark Gene: daz4 has been classified as Red List (Low Evidence).
Mendeliome v0.13854 DAZ4 Zornitza Stark Classified gene: DAZ4 as Red List (low evidence)
Mendeliome v0.13854 DAZ4 Zornitza Stark Gene: daz4 has been classified as Red List (Low Evidence).
Mendeliome v0.13853 DAZ4 Zornitza Stark reviewed gene: DAZ4: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13853 DAZ3 Zornitza Stark Marked gene: DAZ3 as ready
Mendeliome v0.13853 DAZ3 Zornitza Stark Gene: daz3 has been classified as Red List (Low Evidence).
Mendeliome v0.13853 DAZ3 Zornitza Stark Classified gene: DAZ3 as Red List (low evidence)
Mendeliome v0.13853 DAZ3 Zornitza Stark Gene: daz3 has been classified as Red List (Low Evidence).
Mendeliome v0.13852 CYP2A6 Ain Roesley Marked gene: CYP2A6 as ready
Mendeliome v0.13852 CYP2A6 Ain Roesley Gene: cyp2a6 has been classified as Red List (Low Evidence).
Mendeliome v0.13852 DAZ3 Zornitza Stark reviewed gene: DAZ3: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13852 CYP2A6 Ain Roesley Phenotypes for gene: CYP2A6 were changed from to Coumarin resistance MIM#122700
Mendeliome v0.13852 CYP2A6 Ain Roesley Classified gene: CYP2A6 as Red List (low evidence)
Mendeliome v0.13852 CYP2A6 Ain Roesley Gene: cyp2a6 has been classified as Red List (Low Evidence).
Mendeliome v0.13851 CYP2A6 Ain Roesley reviewed gene: CYP2A6: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: Coumarin resistance MIM#122700; Mode of inheritance: None; Current diagnostic: yes
Mendeliome v0.13851 DAZ2 Zornitza Stark Marked gene: DAZ2 as ready
Mendeliome v0.13851 DAZ2 Zornitza Stark Gene: daz2 has been classified as Red List (Low Evidence).
Mendeliome v0.13851 DAZ2 Zornitza Stark Classified gene: DAZ2 as Red List (low evidence)
Mendeliome v0.13851 DAZ2 Zornitza Stark Gene: daz2 has been classified as Red List (Low Evidence).
Mendeliome v0.13850 DAZ2 Zornitza Stark reviewed gene: DAZ2: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13850 DAZ1 Zornitza Stark Marked gene: DAZ1 as ready
Mendeliome v0.13850 DAZ1 Zornitza Stark Gene: daz1 has been classified as Red List (Low Evidence).
Mendeliome v0.13850 DAZ1 Zornitza Stark Classified gene: DAZ1 as Red List (low evidence)
Mendeliome v0.13850 DAZ1 Zornitza Stark Gene: daz1 has been classified as Red List (Low Evidence).
Mendeliome v0.13849 DAZ1 Zornitza Stark reviewed gene: DAZ1: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13849 CYP27A1 Ain Roesley Phenotypes for gene: CYP27A1 were changed from Cerebrotendinous xanthomatosis MIM#213700; Disorders of bile acid biosynthesis to Cerebrotendinous xanthomatosis MIM#213700; Disorders of bile acid biosynthesis
Mendeliome v0.13848 CYP27A1 Ain Roesley Marked gene: CYP27A1 as ready
Mendeliome v0.13848 CYP27A1 Ain Roesley Gene: cyp27a1 has been classified as Green List (High Evidence).
Mendeliome v0.13848 CYP27A1 Ain Roesley Phenotypes for gene: CYP27A1 were changed from to Cerebrotendinous xanthomatosis MIM#213700; Disorders of bile acid biosynthesis
Mendeliome v0.13847 CYP27A1 Ain Roesley Publications for gene: CYP27A1 were set to
Mendeliome v0.13847 CYP27A1 Ain Roesley Mode of inheritance for gene: CYP27A1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13846 DARS2 Zornitza Stark Marked gene: DARS2 as ready
Mendeliome v0.13846 DARS2 Zornitza Stark Gene: dars2 has been classified as Green List (High Evidence).
Mendeliome v0.13846 DARS2 Zornitza Stark Phenotypes for gene: DARS2 were changed from to Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation, MIM# 611105
Mendeliome v0.13845 CYP26C1 Ain Roesley Marked gene: CYP26C1 as ready
Mendeliome v0.13845 CYP26C1 Ain Roesley Gene: cyp26c1 has been classified as Green List (High Evidence).
Mendeliome v0.13845 DARS2 Zornitza Stark Publications for gene: DARS2 were set to
Mendeliome v0.13845 CYP26C1 Ain Roesley Phenotypes for gene: CYP26C1 were changed from to Focal facial dermal dysplasia 4 MIM#614974
Mendeliome v0.13844 DARS2 Zornitza Stark Mode of inheritance for gene: DARS2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13843 DARS2 Zornitza Stark changed review comment from: Slowly progressive disorder with variable age of onset, multiple families reported.; to: Leukoencephalopathy with brainstem and spinal cord involvement and lactate elevation (LBSL) is defined on the basis of a highly characteristic constellation of abnormalities observed by magnetic resonance imaging and spectroscopy (Scheper et al., 2007). Affected individuals develop slowly progressive cerebellar ataxia, spasticity, and dorsal column dysfunction, sometimes with a mild cognitive deficit or decline.
Mendeliome v0.13843 CYP26C1 Ain Roesley Publications for gene: CYP26C1 were set to
Mendeliome v0.13843 CYP26C1 Ain Roesley Mode of inheritance for gene: CYP26C1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13842 CYP26C1 Ain Roesley reviewed gene: CYP26C1: Rating: GREEN; Mode of pathogenicity: None; Publications: 29263414, 23161670, 16530710; Phenotypes: Focal facial dermal dysplasia 4 MIM#614974; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13842 DARS2 Zornitza Stark reviewed gene: DARS2: Rating: GREEN; Mode of pathogenicity: None; Publications: 17384640, 15002045, 16788019; Phenotypes: Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation, MIM# 611105; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13842 D2HGDH Zornitza Stark Marked gene: D2HGDH as ready
Mendeliome v0.13842 D2HGDH Zornitza Stark Gene: d2hgdh has been classified as Green List (High Evidence).
Mendeliome v0.13842 D2HGDH Zornitza Stark Phenotypes for gene: D2HGDH were changed from to D-2-hydroxyglutaric aciduria MIM#600721
Mendeliome v0.13841 D2HGDH Zornitza Stark Publications for gene: D2HGDH were set to
Mendeliome v0.13840 D2HGDH Zornitza Stark Mode of inheritance for gene: D2HGDH was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13839 D2HGDH Zornitza Stark reviewed gene: D2HGDH: Rating: GREEN; Mode of pathogenicity: None; Publications: 25778941, 31349060, 15609246, 20020533; Phenotypes: D-2-hydroxyglutaric aciduria MIM#600721; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13839 CYP7B1 Zornitza Stark Marked gene: CYP7B1 as ready
Mendeliome v0.13839 CYP7B1 Zornitza Stark Gene: cyp7b1 has been classified as Green List (High Evidence).
Mendeliome v0.13839 CYP7B1 Zornitza Stark Phenotypes for gene: CYP7B1 were changed from to Bile acid synthesis defect, congenital, 3 MIM#613812; Spastic paraplegia 5A, autosomal recessive MIM#270800; Disorders of bile acid biosynthesis
Mendeliome v0.13838 CYP7B1 Zornitza Stark Publications for gene: CYP7B1 were set to
Mendeliome v0.13837 CYP7B1 Zornitza Stark Mode of inheritance for gene: CYP7B1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13836 CYP1A2 Ain Roesley Marked gene: CYP1A2 as ready
Mendeliome v0.13836 CYP1A2 Ain Roesley Gene: cyp1a2 has been classified as Red List (Low Evidence).
Mendeliome v0.13836 CYP1A2 Ain Roesley Classified gene: CYP1A2 as Red List (low evidence)
Mendeliome v0.13836 CYP1A2 Ain Roesley Gene: cyp1a2 has been classified as Red List (Low Evidence).
Palmoplantar Keratoderma and Erythrokeratoderma v0.120 KLF4 Zornitza Stark Mode of inheritance for gene: KLF4 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13835 CYP1A2 Ain Roesley reviewed gene: CYP1A2: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None; Current diagnostic: yes
Mendeliome v0.13835 KLF4 Zornitza Stark Marked gene: KLF4 as ready
Mendeliome v0.13835 KLF4 Zornitza Stark Gene: klf4 has been classified as Green List (High Evidence).
Mendeliome v0.13835 KLF4 Zornitza Stark Mode of inheritance for gene: KLF4 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Leukodystrophy - paediatric v0.264 NDUFV2 Zornitza Stark Marked gene: NDUFV2 as ready
Leukodystrophy - paediatric v0.264 NDUFV2 Zornitza Stark Gene: ndufv2 has been classified as Green List (High Evidence).
Leukodystrophy - paediatric v0.264 NDUFV2 Zornitza Stark Classified gene: NDUFV2 as Green List (high evidence)
Leukodystrophy - paediatric v0.264 NDUFV2 Zornitza Stark Gene: ndufv2 has been classified as Green List (High Evidence).
Mendeliome v0.13834 CYP19A1 Ain Roesley Marked gene: CYP19A1 as ready
Mendeliome v0.13834 CYP19A1 Ain Roesley Gene: cyp19a1 has been classified as Green List (High Evidence).
Mendeliome v0.13834 CYP19A1 Ain Roesley Tag SV/CNV tag was added to gene: CYP19A1.
Mendeliome v0.13834 CYP19A1 Ain Roesley Phenotypes for gene: CYP19A1 were changed from to Aromatase deficiency (MIM#613546), AR; Aromatase excess syndrome (MIM#139300), AD
Mendeliome v0.13833 CYP19A1 Ain Roesley Publications for gene: CYP19A1 were set to
Mendeliome v0.13833 CYP19A1 Ain Roesley Mode of inheritance for gene: CYP19A1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Proteinuria v0.194 P3H2 Zornitza Stark Marked gene: P3H2 as ready
Proteinuria v0.194 P3H2 Zornitza Stark Gene: p3h2 has been classified as Green List (High Evidence).
Proteinuria v0.194 P3H2 Zornitza Stark Classified gene: P3H2 as Green List (high evidence)
Proteinuria v0.194 P3H2 Zornitza Stark Gene: p3h2 has been classified as Green List (High Evidence).
Mendeliome v0.13832 CYP19A1 Ain Roesley reviewed gene: CYP19A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 17164303, 25264451; Phenotypes: Aromatase deficiency (MIM#613546), AR, Aromatase excess syndrome (MIM#139300), AD; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Hereditary Neuropathy_CMT - isolated v1.17 NRG1 Zornitza Stark Marked gene: NRG1 as ready
Hereditary Neuropathy_CMT - isolated v1.17 NRG1 Zornitza Stark Gene: nrg1 has been classified as Red List (Low Evidence).
Hereditary Neuropathy_CMT - isolated v1.17 NRG1 Zornitza Stark gene: NRG1 was added
gene: NRG1 was added to Hereditary Neuropathy_CMT - isolated. Sources: Expert Review
Mode of inheritance for gene: NRG1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: NRG1 were set to 35485770
Phenotypes for gene: NRG1 were set to Peripheral neuropathy MONDO:0005244
Review for gene: NRG1 was set to RED
Added comment: 1 female with consanguineous parents with distal muscle weakness starting age 20, progressively worsening, described as a peripheral neuropathy. Has a homozygous missense, 23 hets in gnomad. Proband has a sister who is also mildly affected, cramps and numbness in legs and feet. She is also homozygous for the variant. All 8 healthy family members that were tested were either only het or were hom for the WT allele.

13 other hom variants were identified in the proband, 11 were ruled out based on homs in gnomad, genes associated with off phenotype conditions, or non-segregation within the family. 2 variants in ZFHX4 and DMTN did cosegregate with disease. These 2 gene have limited reports/functional studies for off phenotype conditions so the NRG1 variant was thought to be the best match.

In a homozygous null NGR1 zebrafish, the variant identified in this individual was not able to rescue the phenotype compared to WT.
Sources: Expert Review
Mendeliome v0.13832 CYCS Ain Roesley Marked gene: CYCS as ready
Mendeliome v0.13832 CYCS Ain Roesley Gene: cycs has been classified as Green List (High Evidence).
Mendeliome v0.13832 CYCS Ain Roesley Phenotypes for gene: CYCS were changed from to Thrombocytopenia 4, MIM# 612004
Mendeliome v0.13831 CYCS Ain Roesley Publications for gene: CYCS were set to
Mendeliome v0.13831 CYCS Ain Roesley Mode of inheritance for gene: CYCS was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13830 CYCS Ain Roesley reviewed gene: CYCS: Rating: GREEN; Mode of pathogenicity: None; Publications: 24326104, 18345000, 30051457; Phenotypes: Thrombocytopenia 4, MIM# 612004; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Intellectual disability syndromic and non-syndromic v0.4751 CYC1 Ain Roesley Phenotypes for gene: CYC1 were changed from Mitochondrial complex III deficiency, nuclear type 6 MIM#615453 to Mitochondrial complex III deficiency, nuclear type 6 MIM#615453
Renal Ciliopathies and Nephronophthisis v1.9 TULP3 Zornitza Stark Marked gene: TULP3 as ready
Renal Ciliopathies and Nephronophthisis v1.9 TULP3 Zornitza Stark Gene: tulp3 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4749 CYC1 Ain Roesley Phenotypes for gene: CYC1 were changed from Mitochondrial complex III deficiency, nuclear type 6 MIM#615453 to Mitochondrial complex III deficiency, nuclear type 6 MIM#615453
Intellectual disability syndromic and non-syndromic v0.4750 CYC1 Ain Roesley Mode of inheritance for gene: CYC1 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4750 CYC1 Ain Roesley Marked gene: CYC1 as ready
Intellectual disability syndromic and non-syndromic v0.4750 CYC1 Ain Roesley Gene: cyc1 has been classified as Red List (Low Evidence).
Mendeliome v0.13830 NRG1 Zornitza Stark Phenotypes for gene: NRG1 were changed from Hirschsprung disease to Hirschsprung disease, MONDO:0018309; Peripheral neuropathy MONDO:0005244
Intellectual disability syndromic and non-syndromic v0.4750 CYC1 Ain Roesley Phenotypes for gene: CYC1 were changed from to Mitochondrial complex III deficiency, nuclear type 6 MIM#615453
Intellectual disability syndromic and non-syndromic v0.4750 CYC1 Ain Roesley Publications for gene: CYC1 were set to 23910460; 34252606
Intellectual disability syndromic and non-syndromic v0.4749 CYC1 Ain Roesley Publications for gene: CYC1 were set to
Intellectual disability syndromic and non-syndromic v0.4749 CYC1 Ain Roesley Mode of inheritance for gene: CYC1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13829 NRG1 Zornitza Stark Classified gene: NRG1 as Amber List (moderate evidence)
Mendeliome v0.13829 NRG1 Zornitza Stark Gene: nrg1 has been classified as Amber List (Moderate Evidence).
Intellectual disability syndromic and non-syndromic v0.4749 CYC1 Ain Roesley Classified gene: CYC1 as Red List (low evidence)
Intellectual disability syndromic and non-syndromic v0.4749 CYC1 Ain Roesley Gene: cyc1 has been classified as Red List (Low Evidence).
Congenital Disorders of Glycosylation v1.28 TRAPPC9 Zornitza Stark reviewed gene: TRAPPC9: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Intellectual developmental disorder, autosomal recessive 13, MIM# 613192; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4748 CYC1 Ain Roesley reviewed gene: CYC1: Rating: RED; Mode of pathogenicity: None; Publications: 23910460, 34252606; Phenotypes: Mitochondrial complex III deficiency, nuclear type 6 MIM#615453; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13828 CYC1 Ain Roesley Marked gene: CYC1 as ready
Mendeliome v0.13828 CYC1 Ain Roesley Gene: cyc1 has been classified as Green List (High Evidence).
Mendeliome v0.13828 CTR9 Zornitza Stark Phenotypes for gene: CTR9 were changed from Neurodevelopmental disorder (MONDO:0700092), CTR9 related; Intellectual disability (MONDO:0001071); hypotonia (HP:0001252); joint hyperlaxity (HP:0001388); speech delay; coordination problems; tremor (HP:0001337); autism spectrum disorder (MONDO:0005258) to Neurodevelopmental disorder (MONDO:0700092), CTR9 related
Mendeliome v0.13827 CYC1 Ain Roesley Publications for gene: CYC1 were set to
Mendeliome v0.13828 CYC1 Ain Roesley Phenotypes for gene: CYC1 were changed from to Mitochondrial complex III deficiency, nuclear type 6 MIM#615453
Mendeliome v0.13827 CYC1 Ain Roesley Mode of inheritance for gene: CYC1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4748 CTR9 Zornitza Stark Marked gene: CTR9 as ready
Intellectual disability syndromic and non-syndromic v0.4748 CTR9 Zornitza Stark Gene: ctr9 has been classified as Green List (High Evidence).
Mendeliome v0.13826 CYC1 Ain Roesley reviewed gene: CYC1: Rating: GREEN; Mode of pathogenicity: None; Publications: 23910460, 34252606; Phenotypes: Mitochondrial complex III deficiency, nuclear type 6 MIM#615453; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Intellectual disability syndromic and non-syndromic v0.4748 CTR9 Zornitza Stark Phenotypes for gene: CTR9 were changed from Neurodevelopmental disorder (MONDO:0700092), CTR9-related; Intellectual disability (MONDO:0001071); hypotonia (HP:0001252); joint hyperlaxity (HP:0001388); speech delay; coordination problems; tremor (HP:0001337); autism spectrum disorder (MONDO:0005258) to Neurodevelopmental disorder (MONDO:0700092), CTR9-related
Intellectual disability syndromic and non-syndromic v0.4747 CTR9 Zornitza Stark Classified gene: CTR9 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4747 CTR9 Zornitza Stark Gene: ctr9 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4746 DNAH14 Zornitza Stark Classified gene: DNAH14 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4746 DNAH14 Zornitza Stark Gene: dnah14 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4745 DNAH14 Zornitza Stark Phenotypes for gene: DNAH14 were changed from Neurodevelopmental disorder, DNAH14-related (MONDO#0700092) to Neurodevelopmental disorder (MONDO#0700092), DNAH14-related
Intellectual disability syndromic and non-syndromic v0.4744 DNAH14 Zornitza Stark Marked gene: DNAH14 as ready
Intellectual disability syndromic and non-syndromic v0.4744 DNAH14 Zornitza Stark Gene: dnah14 has been removed from the panel.
Mendeliome v0.13826 DNAH14 Zornitza Stark Phenotypes for gene: DNAH14 were changed from Neurodevelopmental disorder, DNAH14-related (MONDO#0700092) to Neurodevelopmental disorder (MONDO#0700092), DNAH14-related
Genetic Epilepsy v0.1591 DNAH14 Zornitza Stark Marked gene: DNAH14 as ready
Genetic Epilepsy v0.1591 DNAH14 Zornitza Stark Gene: dnah14 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1591 DNAH14 Zornitza Stark Phenotypes for gene: DNAH14 were changed from Neurodevelopmental disorder, DNAH14-related (MONDO#0700092) to Neurodevelopmental disorder (MONDO#0700092), DNAH14-related
Genetic Epilepsy v0.1590 DNAH14 Zornitza Stark Classified gene: DNAH14 as Green List (high evidence)
Genetic Epilepsy v0.1590 DNAH14 Zornitza Stark Gene: dnah14 has been classified as Green List (High Evidence).
Mendeliome v0.13825 HNRNPA2B1 Zornitza Stark Phenotypes for gene: HNRNPA2B1 were changed from Inclusion body myopathy with early-onset Paget disease with or without frontotemporal dementia 2 MIM#615422 to oculopharyngeal muscular dystrophy, MONDO:0008116; Inclusion body myopathy with early-onset Paget disease with or without frontotemporal dementia 2 MIM#615422
Mendeliome v0.13824 HNRNPA2B1 Zornitza Stark Classified gene: HNRNPA2B1 as Green List (high evidence)
Mendeliome v0.13824 HNRNPA2B1 Zornitza Stark Gene: hnrnpa2b1 has been classified as Green List (High Evidence).
Congenital ophthalmoplegia v1.5 HNRNPA2B1 Zornitza Stark Marked gene: HNRNPA2B1 as ready
Congenital ophthalmoplegia v1.5 HNRNPA2B1 Zornitza Stark Gene: hnrnpa2b1 has been classified as Green List (High Evidence).
Congenital ophthalmoplegia v1.5 HNRNPA2B1 Zornitza Stark Classified gene: HNRNPA2B1 as Green List (high evidence)
Congenital ophthalmoplegia v1.5 HNRNPA2B1 Zornitza Stark Gene: hnrnpa2b1 has been classified as Green List (High Evidence).
Microcephaly v1.122 DTYMK Zornitza Stark Marked gene: DTYMK as ready
Microcephaly v1.122 DTYMK Zornitza Stark Gene: dtymk has been classified as Green List (High Evidence).
Microcephaly v1.122 DTYMK Zornitza Stark Classified gene: DTYMK as Green List (high evidence)
Microcephaly v1.122 DTYMK Zornitza Stark Gene: dtymk has been classified as Green List (High Evidence).
Regression v0.473 DTYMK Zornitza Stark Marked gene: DTYMK as ready
Regression v0.473 DTYMK Zornitza Stark Gene: dtymk has been classified as Green List (High Evidence).
Regression v0.473 DTYMK Zornitza Stark Classified gene: DTYMK as Green List (high evidence)
Regression v0.473 DTYMK Zornitza Stark Gene: dtymk has been classified as Green List (High Evidence).
Regression v0.472 DTYMK Zornitza Stark gene: DTYMK was added
gene: DTYMK was added to Regression. Sources: Expert Review
Mode of inheritance for gene: DTYMK was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: DTYMK were set to 34918187; 31271740
Phenotypes for gene: DTYMK were set to Neurodegeneration, childhood-onset, with progressive microcephaly (MIM# 619847)
Review for gene: DTYMK was set to GREEN
Added comment: Progressive neurodegenerative disorder, 3 families reported.
Sources: Expert Review
Mendeliome v0.13823 DTYMK Zornitza Stark Phenotypes for gene: DTYMK were changed from Intellectual disability; microcephaly to Neurodegeneration, childhood-onset, with progressive microcephaly (MIM# 619847)
Mendeliome v0.13822 DTYMK Zornitza Stark Publications for gene: DTYMK were set to 31271740
Mendeliome v0.13821 DTYMK Zornitza Stark Classified gene: DTYMK as Green List (high evidence)
Mendeliome v0.13821 DTYMK Zornitza Stark Gene: dtymk has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4744 PRDM13 Zornitza Stark Phenotypes for gene: PRDM13 were changed from intellectual disability, MONDO:0001071, PRDM13-associated; ataxia with cerebellar hypoplasia, MONDO:0016054, PRDM13-associated; congenital hypogonadotropic hypogonadism, MONDO:0015770 to intellectual disability, MONDO:0001071, PRDM13-associated; Pontocerebellar hypoplasia (MONDO:0020135), PRDM13 related; congenital hypogonadotropic hypogonadism, MONDO:0015770
Intellectual disability syndromic and non-syndromic v0.4743 PRDM13 Zornitza Stark Publications for gene: PRDM13 were set to 34730112
Intellectual disability syndromic and non-syndromic v0.4742 PRDM13 Zornitza Stark Classified gene: PRDM13 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4742 PRDM13 Zornitza Stark Gene: prdm13 has been classified as Green List (High Evidence).
Cerebellar and Pontocerebellar Hypoplasia v1.49 PRDM13 Zornitza Stark Marked gene: PRDM13 as ready
Cerebellar and Pontocerebellar Hypoplasia v1.49 PRDM13 Zornitza Stark Gene: prdm13 has been classified as Green List (High Evidence).
Cerebellar and Pontocerebellar Hypoplasia v1.49 PRDM13 Zornitza Stark Classified gene: PRDM13 as Green List (high evidence)
Cerebellar and Pontocerebellar Hypoplasia v1.49 PRDM13 Zornitza Stark Gene: prdm13 has been classified as Green List (High Evidence).
Mendeliome v0.13820 KCNH5 Zornitza Stark Marked gene: KCNH5 as ready
Mendeliome v0.13820 KCNH5 Zornitza Stark Gene: kcnh5 has been classified as Green List (High Evidence).
Cataract v0.336 CRYGS Zornitza Stark Marked gene: CRYGS as ready
Cataract v0.336 CRYGS Zornitza Stark Gene: crygs has been classified as Green List (High Evidence).
Cataract v0.336 CRYGS Zornitza Stark Phenotypes for gene: CRYGS were changed from to Cataract 20, multiple types MIM#116100
Cataract v0.335 CRYGS Zornitza Stark Publications for gene: CRYGS were set to
Cataract v0.334 CRYGS Zornitza Stark Mode of inheritance for gene: CRYGS was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Cataract v0.333 CRYGS Zornitza Stark reviewed gene: CRYGS: Rating: GREEN; Mode of pathogenicity: None; Publications: 34014271, 16141006, 18587492, 19262743; Phenotypes: Cataract 20, multiple types MIM#116100; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Callosome v0.443 CREB1 Zornitza Stark Marked gene: CREB1 as ready
Callosome v0.443 CREB1 Zornitza Stark Gene: creb1 has been classified as Red List (Low Evidence).
Callosome v0.443 CREB1 Zornitza Stark Phenotypes for gene: CREB1 were changed from to Agenesis of corpus callosum, MONDO:0009022
Callosome v0.442 CREB1 Zornitza Stark Publications for gene: CREB1 were set to
Callosome v0.441 CREB1 Zornitza Stark Mode of inheritance for gene: CREB1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Callosome v0.440 CREB1 Zornitza Stark Classified gene: CREB1 as Red List (low evidence)
Callosome v0.440 CREB1 Zornitza Stark Gene: creb1 has been classified as Red List (Low Evidence).
Callosome v0.439 CREB1 Zornitza Stark reviewed gene: CREB1: Rating: RED; Mode of pathogenicity: None; Publications: 22267179; Phenotypes: Agenesis of corpus callosum, MONDO:0009022; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13820 CREB1 Zornitza Stark Phenotypes for gene: CREB1 were changed from corpus callosum agenesis; thyroid follicular hypoplasia to Agenesis of corpus callosum, MONDO:0009022
Mendeliome v0.13819 CREB1 Zornitza Stark edited their review of gene: CREB1: Changed rating: RED
Mendeliome v0.13819 CREB1 Zornitza Stark reviewed gene: CREB1: Rating: AMBER; Mode of pathogenicity: None; Publications: ; Phenotypes: Agenesis of corpus callosum, MONDO:0009022; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13819 SLC16A12 Zornitza Stark Marked gene: SLC16A12 as ready
Mendeliome v0.13819 SLC16A12 Zornitza Stark Gene: slc16a12 has been classified as Green List (High Evidence).
Mendeliome v0.13819 SLC16A12 Zornitza Stark Phenotypes for gene: SLC16A12 were changed from to Cataract 47, juvenile, with microcornea, MIM# 612018
Mendeliome v0.13818 SLC16A12 Zornitza Stark Publications for gene: SLC16A12 were set to
Mendeliome v0.13817 SLC16A12 Zornitza Stark Mode of inheritance for gene: SLC16A12 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13816 SLC14A1 Zornitza Stark Marked gene: SLC14A1 as ready
Mendeliome v0.13816 SLC14A1 Zornitza Stark Gene: slc14a1 has been classified as Red List (Low Evidence).
Mendeliome v0.13816 SLC14A1 Zornitza Stark Phenotypes for gene: SLC14A1 were changed from to [Blood group, Kidd], MIM#111000
Mendeliome v0.13815 SLC14A1 Zornitza Stark Publications for gene: SLC14A1 were set to
Mendeliome v0.13814 SLC14A1 Zornitza Stark Mode of inheritance for gene: SLC14A1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13813 SLC14A1 Zornitza Stark Classified gene: SLC14A1 as Red List (low evidence)
Mendeliome v0.13813 SLC14A1 Zornitza Stark Gene: slc14a1 has been classified as Red List (Low Evidence).
Mendeliome v0.13812 SLC12A5 Zornitza Stark Marked gene: SLC12A5 as ready
Mendeliome v0.13812 SLC12A5 Zornitza Stark Gene: slc12a5 has been classified as Green List (High Evidence).
Mendeliome v0.13812 SLC12A5 Zornitza Stark Phenotypes for gene: SLC12A5 were changed from to Developmental and epileptic encephalopathy 34, MIM# 616645; {Epilepsy, idiopathic generalized, susceptibility to, 14}, MIM# 616685
Mendeliome v0.13811 SLC12A5 Zornitza Stark Publications for gene: SLC12A5 were set to
Mendeliome v0.13810 SLC12A5 Zornitza Stark Mode of inheritance for gene: SLC12A5 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13809 CORIN Zornitza Stark Marked gene: CORIN as ready
Mendeliome v0.13809 CORIN Zornitza Stark Gene: corin has been classified as Red List (Low Evidence).
Mendeliome v0.13809 DUSP6 Zornitza Stark Marked gene: DUSP6 as ready
Mendeliome v0.13809 DUSP6 Zornitza Stark Gene: dusp6 has been classified as Red List (Low Evidence).
Callosome v0.439 DUSP6 Zornitza Stark Marked gene: DUSP6 as ready
Callosome v0.439 DUSP6 Zornitza Stark Gene: dusp6 has been classified as Red List (Low Evidence).
Callosome v0.439 DUSP6 Zornitza Stark Phenotypes for gene: DUSP6 were changed from to Hypogonadotropic hypogonadism 19 with or without anosmia - MIM#615269
Callosome v0.438 DUSP6 Zornitza Stark Publications for gene: DUSP6 were set to
Callosome v0.437 DUSP6 Zornitza Stark Mode of inheritance for gene: DUSP6 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Callosome v0.436 DUSP6 Zornitza Stark Classified gene: DUSP6 as Red List (low evidence)
Callosome v0.436 DUSP6 Zornitza Stark Gene: dusp6 has been classified as Red List (Low Evidence).
Differences of Sex Development v0.258 DUSP6 Zornitza Stark Marked gene: DUSP6 as ready
Differences of Sex Development v0.258 DUSP6 Zornitza Stark Gene: dusp6 has been classified as Red List (Low Evidence).
Differences of Sex Development v0.258 DUSP6 Zornitza Stark Phenotypes for gene: DUSP6 were changed from to Hypogonadotropic hypogonadism 19 with or without anosmia - MIM#615269
Differences of Sex Development v0.257 DUSP6 Zornitza Stark Publications for gene: DUSP6 were set to
Differences of Sex Development v0.256 DUSP6 Zornitza Stark Mode of inheritance for gene: DUSP6 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Differences of Sex Development v0.255 DUSP6 Zornitza Stark Classified gene: DUSP6 as Red List (low evidence)
Differences of Sex Development v0.255 DUSP6 Zornitza Stark Gene: dusp6 has been classified as Red List (Low Evidence).
Mendeliome v0.13809 DUSP6 Zornitza Stark Phenotypes for gene: DUSP6 were changed from to Hypogonadotropic hypogonadism 19 with or without anosmia - MIM#615269
Mendeliome v0.13808 DUSP6 Zornitza Stark Publications for gene: DUSP6 were set to
Mendeliome v0.13807 DUSP6 Zornitza Stark Mode of inheritance for gene: DUSP6 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13806 DUSP6 Zornitza Stark Classified gene: DUSP6 as Red List (low evidence)
Mendeliome v0.13806 DUSP6 Zornitza Stark Gene: dusp6 has been classified as Red List (Low Evidence).
Monogenic Diabetes v0.26 DYRK1B Zornitza Stark Marked gene: DYRK1B as ready
Monogenic Diabetes v0.26 DYRK1B Zornitza Stark Gene: dyrk1b has been classified as Amber List (Moderate Evidence).
Monogenic Diabetes v0.26 DYRK1B Zornitza Stark Publications for gene: DYRK1B were set to
Monogenic Diabetes v0.25 DYRK1B Zornitza Stark Mode of inheritance for gene: DYRK1B was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Monogenic Diabetes v0.24 DYRK1B Zornitza Stark Classified gene: DYRK1B as Amber List (moderate evidence)
Monogenic Diabetes v0.24 DYRK1B Zornitza Stark Gene: dyrk1b has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13805 DYRK1B Zornitza Stark Marked gene: DYRK1B as ready
Mendeliome v0.13805 DYRK1B Zornitza Stark Gene: dyrk1b has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13805 DYRK1B Zornitza Stark Phenotypes for gene: DYRK1B were changed from to Abdominal obesity-metabolic syndrome 3 - MIM#615812
Mendeliome v0.13804 DYRK1B Zornitza Stark Publications for gene: DYRK1B were set to
Mendeliome v0.13803 DYRK1B Zornitza Stark Mode of inheritance for gene: DYRK1B was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13802 DYRK1B Zornitza Stark Classified gene: DYRK1B as Amber List (moderate evidence)
Mendeliome v0.13802 DYRK1B Zornitza Stark Gene: dyrk1b has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13801 COL27A1 Zornitza Stark reviewed gene: COL27A1: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Steel syndrome MIM #615155; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13801 COL27A1 Zornitza Stark Mode of inheritance for gene: COL27A1 was changed from MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13800 KCNJ2 Ain Roesley Deleted their comment
Mendeliome v0.13800 KLF4 Elena Savva Classified gene: KLF4 as Green List (high evidence)
Mendeliome v0.13800 KLF4 Elena Savva Gene: klf4 has been classified as Green List (High Evidence).
Palmoplantar Keratoderma and Erythrokeratoderma v0.119 KLF4 Elena Savva Classified gene: KLF4 as Green List (high evidence)
Palmoplantar Keratoderma and Erythrokeratoderma v0.119 KLF4 Elena Savva Gene: klf4 has been classified as Green List (High Evidence).
Palmoplantar Keratoderma and Erythrokeratoderma v0.119 KLF4 Elena Savva Classified gene: KLF4 as Green List (high evidence)
Palmoplantar Keratoderma and Erythrokeratoderma v0.119 KLF4 Elena Savva Gene: klf4 has been classified as Green List (High Evidence).
Palmoplantar Keratoderma and Erythrokeratoderma v0.118 KLF4 Elena Savva Marked gene: KLF4 as ready
Palmoplantar Keratoderma and Erythrokeratoderma v0.118 KLF4 Elena Savva Gene: klf4 has been classified as Red List (Low Evidence).
Microcephaly v1.121 DTYMK Daniel Flanagan gene: DTYMK was added
gene: DTYMK was added to Microcephaly. Sources: Expert list
Mode of inheritance for gene: DTYMK was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: DTYMK were set to 34918187; 31271740
Phenotypes for gene: DTYMK were set to Neurodegeneration, childhood-onset, with progressive microcephaly (MIM# 619847)
Review for gene: DTYMK was set to GREEN
Added comment: Three unrelated families with biallelic DTYMK variants. The probands had severe microcephaly, growth retardation and minimal neurodevelopment. Supporting zebrafish model.
Sources: Expert list
Mendeliome v0.13799 DTYMK Daniel Flanagan reviewed gene: DTYMK: Rating: GREEN; Mode of pathogenicity: None; Publications: 34918187, 31271740; Phenotypes: Neurodegeneration, childhood-onset, with progressive microcephaly (MIM# 619847); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Proteinuria v0.193 P3H2 Daniel Flanagan gene: P3H2 was added
gene: P3H2 was added to Proteinuria. Sources: Expert list
Mode of inheritance for gene: P3H2 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: P3H2 were set to 35499085
Phenotypes for gene: P3H2 were set to Myopia, high, with cataract and vitreoretinal degeneration (MIM# 614292); Proteinuria, P3H2-related MONDO:0003634
Review for gene: P3H2 was set to GREEN
Added comment: Candidate gene for albuminuria. Three families reported with homozygous P3H2 variants who have ocular abnormalities and albuminuria. Segregation with microalbuminuria and microhematuria in four affected siblings. Knockout mice initially have a TBMN phenotype that slowly progresses to a FSGS phenotype.
Sources: Expert list
Intellectual disability syndromic and non-syndromic v0.4741 CTR9 Dean Phelan gene: CTR9 was added
gene: CTR9 was added to Intellectual disability syndromic and non-syndromic. Sources: Literature
Mode of inheritance for gene: CTR9 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: CTR9 were set to PMID: 35499524
Phenotypes for gene: CTR9 were set to Neurodevelopmental disorder (MONDO:0700092), CTR9-related; Intellectual disability (MONDO:0001071); hypotonia (HP:0001252); joint hyperlaxity (HP:0001388); speech delay; coordination problems; tremor (HP:0001337); autism spectrum disorder (MONDO:0005258)
Review for gene: CTR9 was set to GREEN
Added comment: PMID: 35499524 - Thirteen individuals with variables degrees of intellectual disability, hypotonia, joint hyperlaxity, speech delay, coordination problems, tremor, autism spectrum disorder. Mild dysmorphism and cardiac anomalies were less frequent. Eleven of the variants were shown to be de novo.
Sources: Literature
Mendeliome v0.13799 NRG1 Alison Yeung Classified gene: NRG1 as Red List (low evidence)
Mendeliome v0.13799 NRG1 Alison Yeung Added comment: Comment on list classification: Red for peripheral neuropathy (single family reported)
Amber for Hirschsprung disease
Mendeliome v0.13799 NRG1 Alison Yeung Gene: nrg1 has been classified as Red List (Low Evidence).
Palmoplantar Keratoderma and Erythrokeratoderma v0.118 KLF4 Elena Savva gene: KLF4 was added
gene: KLF4 was added to Palmoplantar Keratoderma and Erythrokeratoderma. Sources: Literature
Mode of inheritance for gene: KLF4 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: KLF4 were set to PMID: 35168889; 10431239
Phenotypes for gene: KLF4 were set to Hereditary palmoplantar keratoderma MONDO:0019272, KFL4-related
Review for gene: KLF4 was set to GREEN
Added comment: PMID: 35168889 - 3 patients from 2 unrelated families with palmoplantar keratoderma. Two variants found, fs and a missense.
Functional studies on patient skin biopsy shows "slightly but significantly decreased" protein expression in both children.
Gene was shown to bind the DSG1 promoter and regulate expression. Transfected cells showed reduced DSG1 expression.

PMID: 10431239 - mouse K/O died shortly after birth due to loss of skin barrier function

gnomAD: single het fs in the population
Sources: Literature
Mendeliome v0.13798 KLF4 Elena Savva gene: KLF4 was added
gene: KLF4 was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: KLF4 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: KLF4 were set to PMID: 35168889; 10431239
Phenotypes for gene: KLF4 were set to Hereditary palmoplantar keratoderma MONDO:0019272, KFL4-related
Review for gene: KLF4 was set to GREEN
Added comment: PMID: 35168889 - 3 patients from 2 unrelated families with palmoplantar keratoderma. Two variants found, fs and a missense.
Functional studies on patient skin biopsy shows "slightly but significantly decreased" protein expression in both children.
Gene was shown to bind the DSG1 promoter and regulate expression. Transfected cells showed reduced DSG1 expression.

PMID: 10431239 - mouse K/O died shortly after birth due to loss of skin barrier function

gnomAD: single het fs in the population
Sources: Literature
Mendeliome v0.13798 P3H2 Zornitza Stark Publications for gene: P3H2 were set to 21885030; 24172257; 25469533
Cerebellar and Pontocerebellar Hypoplasia v1.48 PRDM13 Dean Phelan gene: PRDM13 was added
gene: PRDM13 was added to Cerebellar and Pontocerebellar Hypoplasia. Sources: Literature
Mode of inheritance for gene: PRDM13 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: PRDM13 were set to PMID: 35390279
Phenotypes for gene: PRDM13 were set to Pontocerebellar hypoplasia (MONDO:0020135), PRDM13 related; Intellectual disability (MONDO:0001071)
Review for gene: PRDM13 was set to GREEN
Added comment: PMID: 35390279 - Biallelic variants identified in multiple individuals from four unrelated families with pontocerebellar hypoplasia, pronounced deficits in cognitive and motor development. Homozygous PTC variants were present in the most severely affected individuals.
Sources: Literature
Renal Ciliopathies and Nephronophthisis v1.9 TULP3 Zornitza Stark Classified gene: TULP3 as Green List (high evidence)
Renal Ciliopathies and Nephronophthisis v1.9 TULP3 Zornitza Stark Gene: tulp3 has been classified as Green List (High Evidence).
Leukodystrophy - paediatric v0.263 NDUFV2 Michelle Torres gene: NDUFV2 was added
gene: NDUFV2 was added to Leukodystrophy - paediatric. Sources: Literature
Mode of inheritance for gene: NDUFV2 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: NDUFV2 were set to 33811136
Phenotypes for gene: NDUFV2 were set to Mitochondrial complex I deficiency, nuclear type 7 (MIM#618229)
Review for gene: NDUFV2 was set to GREEN
Added comment: Three missense mutations were identified in 2 unrelated and nonconsanguineous families with progressive cavitating leukoencephalopathy. The 1st family (WGS) has 2 homozygous siblings with p.(Ala183Thr), and 2nd family (WES) has 2 cHet siblings with p.(Leu156His) and p.(C135Ser). Complex I deficiency was confirmed in affected individuals’ fibroblasts and a muscle
biopsy. Functional and structural analyses revealed that these mutations affect the structural stability and function of the NDUFV2 protein.
Sources: Literature
Mendeliome v0.13797 CTR9 Zornitza Stark Marked gene: CTR9 as ready
Mendeliome v0.13797 CTR9 Zornitza Stark Gene: ctr9 has been classified as Green List (High Evidence).
Mendeliome v0.13797 HNRNPA2B1 Naomi Baker reviewed gene: HNRNPA2B1: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID:35484142; Phenotypes: oculopharyngeal muscular dystrophy, MONDO:0008116; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13797 CTR9 Zornitza Stark Classified gene: CTR9 as Green List (high evidence)
Mendeliome v0.13797 CTR9 Zornitza Stark Gene: ctr9 has been classified as Green List (High Evidence).
Microcephaly v1.121 DROSHA Zornitza Stark Marked gene: DROSHA as ready
Microcephaly v1.121 DROSHA Zornitza Stark Gene: drosha has been classified as Amber List (Moderate Evidence).
Microcephaly v1.121 DROSHA Zornitza Stark Classified gene: DROSHA as Amber List (moderate evidence)
Microcephaly v1.121 DROSHA Zornitza Stark Gene: drosha has been classified as Amber List (Moderate Evidence).
Intellectual disability syndromic and non-syndromic v0.4741 PRDM13 Dean Phelan reviewed gene: PRDM13: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 35390279; Phenotypes: Pontocerebellar hypoplasia (MONDO:0020135), PRDM13 related, Intellectual disability (MONDO:0001071); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Genetic Epilepsy v0.1589 DNAH14 Chern Lim gene: DNAH14 was added
gene: DNAH14 was added to Genetic Epilepsy. Sources: Literature
Mode of inheritance for gene: DNAH14 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: DNAH14 were set to PMID: 35438214
Phenotypes for gene: DNAH14 were set to Neurodevelopmental disorder, DNAH14-related (MONDO#0700092)
Review for gene: DNAH14 was set to GREEN
gene: DNAH14 was marked as current diagnostic
Added comment: PMID: 35438214:
- Three previously unreported patients with compound heterozygous DNAH14 variants, including one nonsense, one frameshift, and four missense variants. A spectrum of neurological and developmental phenotypes was observed, including seizures, global developmental delay, microcephaly, and hypotonia.
Sources: Literature
Renal Ciliopathies and Nephronophthisis v1.8 TULP3 Anna Ritchie Deleted their comment
Hypertrophic cardiomyopathy_HCM v0.165 TULP3 Alison Yeung Classified gene: TULP3 as Green List (high evidence)
Hypertrophic cardiomyopathy_HCM v0.165 TULP3 Alison Yeung Gene: tulp3 has been classified as Green List (High Evidence).
Renal Ciliopathies and Nephronophthisis v1.8 TULP3 Anna Ritchie edited their review of gene: TULP3: Added comment: 15 individuals from eight unrelated families with bi-allelic variants in TULP3 were detected. The affected individuals reported are mostly adults, in the 3rd through 7th decades of life, and presented with progressive degenerative liver fibrosis with variable fibrocystic kidney disease and hypertrophic cardiomyopathy.

The human phenotype was ecapitulated in adult zebrafish and confirmed disruption of critical ciliary cargo composition in several primary cell lines derived from affected individuals.; Changed rating: GREEN
Hypertrophic cardiomyopathy_HCM v0.164 TULP3 Anna Ritchie Deleted their comment
Genetic Epilepsy v0.1589 DROSHA Zornitza Stark Marked gene: DROSHA as ready
Genetic Epilepsy v0.1589 DROSHA Zornitza Stark Gene: drosha has been classified as Amber List (Moderate Evidence).
Hypertrophic cardiomyopathy_HCM v0.164 TULP3 Anna Ritchie Deleted their comment
Mendeliome v0.13796 P3H2 Daniel Flanagan reviewed gene: P3H2: Rating: GREEN; Mode of pathogenicity: None; Publications: 35499085; Phenotypes: Myopia, high, with cataract and vitreoretinal degeneration (MIM# 614292); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Genetic Epilepsy v0.1589 DROSHA Zornitza Stark Classified gene: DROSHA as Amber List (moderate evidence)
Genetic Epilepsy v0.1589 DROSHA Zornitza Stark Gene: drosha has been classified as Amber List (Moderate Evidence).
Anophthalmia_Microphthalmia_Coloboma v1.21 CDH4 Ain Roesley Marked gene: CDH4 as ready
Anophthalmia_Microphthalmia_Coloboma v1.21 CDH4 Ain Roesley Gene: cdh4 has been classified as Red List (Low Evidence).
Hypertrophic cardiomyopathy_HCM v0.164 TULP3 Alison Yeung Classified gene: TULP3 as Green List (high evidence)
Hypertrophic cardiomyopathy_HCM v0.164 TULP3 Alison Yeung Gene: tulp3 has been classified as Green List (High Evidence).
Hypertrophic cardiomyopathy_HCM v0.163 TULP3 Anna Ritchie commented on gene: TULP3: 15 individuals from eight unrelated families with bi-allelic variants in TULP3 were detected. The affected individuals reported are mostly adults, in the 3rd through 7th decades of life, and presented with progressive degenerative liver fibrosis with variable fibrocystic kidney disease and hypertrophic cardiomyopathy.

The human phenotype was ecapitulated in adult zebrafish and confirmed disruption of critical ciliary cargo composition in several primary cell lines derived from affected individuals.
Anophthalmia_Microphthalmia_Coloboma v1.21 CDH4 Ain Roesley gene: CDH4 was added
gene: CDH4 was added to Anophthalmia_Microphthalmia_Coloboma. Sources: Literature
Mode of inheritance for gene: CDH4 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: CDH4 were set to 35034853
Phenotypes for gene: CDH4 were set to coloboma MONDO#0001476, CDH4-related
Review for gene: CDH4 was set to RED
gene: CDH4 was marked as current diagnostic
Added comment: 1x family with AD coloboma

Also presented with ID and post natal microcephaly

zebrafish KO model
Sources: Literature
Hypertrophic cardiomyopathy_HCM v0.163 TULP3 Anna Ritchie edited their review of gene: TULP3: Added comment: 15 individuals from eight unrelated families with bi-allelic variants in TULP3 were detected. The affected individuals reported are mostly adults, in the 3rd through 7th decades of life, and presented with progressive degenerative liver fibrosis with variable fibrocystic kidney disease and hypertrophic cardiomyopathy.

The human phenotype was ecapitulated in adult zebrafish and confirmed disruption of critical ciliary cargo composition in several primary cell lines derived from affected individuals.; Changed rating: GREEN
Hypertrophic cardiomyopathy_HCM v0.163 TULP3 Alison Yeung Classified gene: TULP3 as Green List (high evidence)
Congenital Disorders of Glycosylation v1.28 TRAPPC9 Alison Yeung Classified gene: TRAPPC9 as Green List (high evidence)
Hypertrophic cardiomyopathy_HCM v0.163 TULP3 Alison Yeung Gene: tulp3 has been classified as Green List (High Evidence).
Congenital Disorders of Glycosylation v1.28 TRAPPC9 Alison Yeung Gene: trappc9 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4741 DNAH14 Chern Lim gene: DNAH14 was added
gene: DNAH14 was added to Intellectual disability syndromic and non-syndromic. Sources: Literature
Mode of inheritance for gene: DNAH14 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: DNAH14 were set to PMID: 35438214
Phenotypes for gene: DNAH14 were set to Neurodevelopmental disorder, DNAH14-related (MONDO#0700092)
Review for gene: DNAH14 was set to GREEN
gene: DNAH14 was marked as current diagnostic
Added comment: PMID: 35438214:
- Three previously unreported patients with compound heterozygous DNAH14 variants, including one nonsense, one frameshift, and four missense variants. A spectrum of neurological and developmental phenotypes was observed, including seizures, global developmental delay, microcephaly, and hypotonia.
Sources: Literature
Hypertrophic cardiomyopathy_HCM v0.162 TULP3 Alison Yeung Marked gene: TULP3 as ready
Hypertrophic cardiomyopathy_HCM v0.162 TULP3 Alison Yeung Gene: tulp3 has been removed from the panel.
Mendeliome v0.13796 CDH4 Ain Roesley Marked gene: CDH4 as ready
Mendeliome v0.13796 CDH4 Ain Roesley Gene: cdh4 has been classified as Red List (Low Evidence).
Mendeliome v0.13796 DNAH14 Zornitza Stark Marked gene: DNAH14 as ready
Mendeliome v0.13796 DNAH14 Zornitza Stark Gene: dnah14 has been classified as Green List (High Evidence).
Mendeliome v0.13796 CDH4 Ain Roesley gene: CDH4 was added
gene: CDH4 was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: CDH4 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: CDH4 were set to 35034853
Phenotypes for gene: CDH4 were set to coloboma MONDO#0001476, CDH4-related
Review for gene: CDH4 was set to RED
gene: CDH4 was marked as current diagnostic
Added comment: 1x family with AD coloboma

Also presented with ID and post natal microcephaly

zebrafish KO model
Sources: Literature
Mendeliome v0.13796 DNAH14 Zornitza Stark Classified gene: DNAH14 as Green List (high evidence)
Mendeliome v0.13796 DNAH14 Zornitza Stark Gene: dnah14 has been classified as Green List (High Evidence).
Congenital Disorders of Glycosylation v1.27 TRAPPC9 Alison Yeung Classified gene: TRAPPC9 as Green List (high evidence)
Congenital Disorders of Glycosylation v1.27 TRAPPC9 Alison Yeung Gene: trappc9 has been classified as Green List (High Evidence).
Mendeliome v0.13795 NRG1 Lucy Spencer reviewed gene: NRG1: Rating: RED; Mode of pathogenicity: None; Publications: 35485770; Phenotypes: Peripheral neuropathy MONDO:0005244; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13795 PDGFRA Ain Roesley changed review comment from: 1x family with AD coloboma

zebrafish KO model; to: 1x family with AD coloboma

Also presented with global developmental delay, autistic behaviour, delayed gross motor development

zebrafish KO model
Congenital ophthalmoplegia v1.4 HNRNPA2B1 Naomi Baker gene: HNRNPA2B1 was added
gene: HNRNPA2B1 was added to Congenital ophthalmoplegia. Sources: Literature
Mode of inheritance for gene: HNRNPA2B1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: HNRNPA2B1 were set to PMID:35484142
Phenotypes for gene: HNRNPA2B1 were set to oculopharyngeal muscular dystrophy, MONDO:0008116
Review for gene: HNRNPA2B1 was set to GREEN
Added comment: PMID:35484142 reports 11 individuals from 10 families with heterozygous frameshift variants that result in the identical protein extension. Phenotype presents as an early-onset oculopharyngeal muscular dystrophy-like phenotype, and includes ptosis, ophthalmoplegia, symmetric proximal and distal weakness, moderate progression, dysphagia, respiratory insufficiency.
Sources: Literature
Congenital Disorders of Glycosylation v1.27 TRAPPC9 Alison Yeung Marked gene: TRAPPC9 as ready
Congenital Disorders of Glycosylation v1.27 TRAPPC9 Alison Yeung Gene: trappc9 has been classified as Green List (High Evidence).
Congenital Disorders of Glycosylation v1.27 TRAPPC9 Alison Yeung Classified gene: TRAPPC9 as Green List (high evidence)
Congenital Disorders of Glycosylation v1.27 TRAPPC9 Alison Yeung Gene: trappc9 has been classified as Green List (High Evidence).
Congenital Disorders of Glycosylation v1.27 TRAPPC9 Alison Yeung Classified gene: TRAPPC9 as Green List (high evidence)
Congenital Disorders of Glycosylation v1.27 TRAPPC9 Alison Yeung Gene: trappc9 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4741 DROSHA Zornitza Stark Marked gene: DROSHA as ready
Intellectual disability syndromic and non-syndromic v0.4741 DROSHA Zornitza Stark Gene: drosha has been classified as Amber List (Moderate Evidence).
Hypertrophic cardiomyopathy_HCM v0.162 TULP3 Anna Ritchie gene: TULP3 was added
gene: TULP3 was added to Hypertrophic cardiomyopathy_HCM. Sources: Literature
Mode of inheritance for gene: TULP3 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: TULP3 were set to PMID: 35397207
Phenotypes for gene: TULP3 were set to progressive degenerative liver fibrosis with variable fibrocystic kidney disease; hypertrophic cardiomyopathy MONDO:0005045
Added comment: 15 individuals from eight unrelated families with bi-allelic variants in TULP3 were detected. The affected individuals reported are mostly adults, in the 3rd through 7th decades of life, and presented with progressive degenerative liver fibrosis with variable fibrocystic kidney disease and hypertrophic cardiomyopathy.

The human phenotype was ecapitulated in adult zebrafish and confirmed disruption of critical ciliary cargo composition in several primary cell lines derived from affected individuals
Sources: Literature
Intellectual disability syndromic and non-syndromic v0.4741 DROSHA Zornitza Stark Classified gene: DROSHA as Amber List (moderate evidence)
Intellectual disability syndromic and non-syndromic v0.4741 DROSHA Zornitza Stark Gene: drosha has been classified as Amber List (Moderate Evidence).
Anophthalmia_Microphthalmia_Coloboma v1.20 PDGFRA Ain Roesley changed review comment from: 1x family with AD coloboma
Sources: Literature; to: 1x family with AD coloboma

zebrafish KO model
Mendeliome v0.13795 PDGFRA Ain Roesley changed review comment from: 1x family with AD coloboma; to: 1x family with AD coloboma

zebrafish KO model
Anophthalmia_Microphthalmia_Coloboma v1.20 PDGFRA Ain Roesley Marked gene: PDGFRA as ready
Anophthalmia_Microphthalmia_Coloboma v1.20 PDGFRA Ain Roesley Gene: pdgfra has been classified as Red List (Low Evidence).
Anophthalmia_Microphthalmia_Coloboma v1.20 PDGFRA Ain Roesley edited their review of gene: PDGFRA: Changed rating: RED
Anophthalmia_Microphthalmia_Coloboma v1.20 PDGFRA Ain Roesley gene: PDGFRA was added
gene: PDGFRA was added to Anophthalmia_Microphthalmia_Coloboma. Sources: Literature
Mode of inheritance for gene: PDGFRA was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: PDGFRA were set to 35034853
Phenotypes for gene: PDGFRA were set to coloboma MONDO#0001476, PDGFRA-related
gene: PDGFRA was marked as current diagnostic
Added comment: 1x family with AD coloboma
Sources: Literature
Congenital Disorders of Glycosylation v1.26 TRAPPC9 Elena Savva Phenotypes for gene: TRAPPC9 were changed from Intellectual developmental disorder, autosomal recessive 13 MIM#613192 to Intellectual developmental disorder, autosomal recessive 13 MIM#613192
Renal Ciliopathies and Nephronophthisis v1.8 TULP3 Anna Ritchie gene: TULP3 was added
gene: TULP3 was added to Renal Ciliopathies and Nephronophthisis. Sources: Literature
Mode of inheritance for gene: TULP3 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: TULP3 were set to PMID: 35397207
Phenotypes for gene: TULP3 were set to progressive degenerative liver fibrosis with variable fibrocystic kidney disease; hypertrophic cardiomyopathy MONDO:0005045
Added comment: 15 individuals from eight unrelated families with bi-allelic variants in TULP3 were detected. The affected individuals reported are mostly adults, in the 3rd through 7th decades of life, and presented with progressive degenerative liver fibrosis with variable fibrocystic kidney disease and hypertrophic cardiomyopathy.

The human phenotype was ecapitulated in adult zebrafish and confirmed disruption of critical ciliary cargo composition in several primary cell lines derived from affected individuals
Sources: Literature
Sources: Literature
Congenital Disorders of Glycosylation v1.26 TRAPPC9 Elena Savva changed review comment from: PMID: 35042660 - 3 individuals with biallelic missense variants. Patients had ID, dysmorphism
and abnormal glycosylation.
Western blot demonstrated reduced TRAPPC9 protein expression, RT-PCR showed reduced gene expression with complementation assays rescuing the phenotype but only shown for 2/3 missense found.
No functional studies performed on the 3rd missense variant.
Sources: Literature; to: PMID: 35042660 - 3 individuals with biallelic missense variants. Patients had ID, dysmorphism
and abnormal glycosylation.
Western blot demonstrated reduced TRAPPC9 protein expression, RT-PCR showed reduced gene expression with complementation assays rescuing the phenotype but only shown for 2/3 missense found.
No functional studies performed on the 3rd missense variant.
Sources: Literature
Congenital Disorders of Glycosylation v1.26 TRAPPC9 Elena Savva Phenotypes for gene: TRAPPC9 were changed from to Intellectual developmental disorder, autosomal recessive 13 MIM#613192
Mendeliome v0.13795 PDGFRA Ain Roesley Phenotypes for gene: PDGFRA were changed from Gastrointestinal stromal tumor/GIST-plus syndrome, somatic or familial - MIM#175510 to Gastrointestinal stromal tumor/GIST-plus syndrome, somatic or familial - MIM#175510; coloboma MONDO#0001476, PDGFRA-related
Mendeliome v0.13794 PDGFRA Ain Roesley Publications for gene: PDGFRA were set to 14699510; 17087943; 25975287; 29486293; 33449152; 34107389; 17566086; 18670346
Congenital Disorders of Glycosylation v1.25 TRAPPC9 Elena Savva gene: TRAPPC9 was added
gene: TRAPPC9 was added to Congenital Disorders of Glycosylation. Sources: Literature
Mode of inheritance for gene: TRAPPC9 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: TRAPPC9 were set to PMID: 35042660
Review for gene: TRAPPC9 was set to AMBER
Added comment: PMID: 35042660 - 3 individuals with biallelic missense variants. Patients had ID, dysmorphism
and abnormal glycosylation.
Western blot demonstrated reduced TRAPPC9 protein expression, RT-PCR showed reduced gene expression with complementation assays rescuing the phenotype but only shown for 2/3 missense found.
No functional studies performed on the 3rd missense variant.
Sources: Literature
Mendeliome v0.13793 PDGFRA Ain Roesley reviewed gene: PDGFRA: Rating: RED; Mode of pathogenicity: None; Publications: 35034853; Phenotypes: coloboma MONDO#0001476, PDGFRA-related; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13793 CD164 Alison Yeung Marked gene: CD164 as ready
Mendeliome v0.13793 CD164 Alison Yeung Gene: cd164 has been classified as Green List (High Evidence).
Mendeliome v0.13793 CD164 Alison Yeung Classified gene: CD164 as Green List (high evidence)
Mendeliome v0.13793 CD164 Alison Yeung Gene: cd164 has been classified as Green List (High Evidence).
Anophthalmia_Microphthalmia_Coloboma v1.19 BMPR1B Ain Roesley Marked gene: BMPR1B as ready
Anophthalmia_Microphthalmia_Coloboma v1.19 BMPR1B Ain Roesley Gene: bmpr1b has been classified as Green List (High Evidence).
Anophthalmia_Microphthalmia_Coloboma v1.19 BMPR1B Ain Roesley Classified gene: BMPR1B as Green List (high evidence)
Anophthalmia_Microphthalmia_Coloboma v1.19 BMPR1B Ain Roesley Gene: bmpr1b has been classified as Green List (High Evidence).
Mendeliome v0.13792 CD164 Alison Yeung gene: CD164 was added
gene: CD164 was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: CD164 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: CD164 were set to 26197441; 35254497; 26197441
Phenotypes for gene: CD164 were set to Deafness, autosomal dominant 66, MIM# 616969
Review for gene: CD164 was set to GREEN
Added comment: p.(Arg192Ter), a truncating variant that results in loss of 6 amino acids, was detected in two families (one Polish and one Korean) with hearing loss. Four affected (heterozygous) and two unaffected (neg) were tested, however 14 members had been diagnosed with HL in a large multi generational family (gene panel 237 genes). The second family (WES) had two affected heterozygous and no unaffected were tested. This same variant had previously been reported in a Danish family (12 affected heterozygous and 13 unaffected negative, but one younger member unaffected are heterozygous) with hearing loss (PMID: 26197441), for which functional studies in HEK cells demonstrated that the truncated protein was almost completely retained on the plasma cell membrane in contrast to the wild-type protein, which targeted primarily to the endo-lysosomal compartments. The YHTL motif, deleted by the c.574C>T nonsense mutation, is a canonical sorting motif
known to be recognized by specific adaptor proteins in the cytosol, leading to subcellular trafficking of the transmembrane protein to endosomes and lysosomes.
Sources: Literature
Mendeliome v0.13791 CTR9 Dean Phelan gene: CTR9 was added
gene: CTR9 was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: CTR9 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: CTR9 were set to PMID: 35499524
Phenotypes for gene: CTR9 were set to Neurodevelopmental disorder (MONDO:0700092), CTR9 related; Intellectual disability (MONDO:0001071); hypotonia (HP:0001252); joint hyperlaxity (HP:0001388); speech delay; coordination problems; tremor (HP:0001337); autism spectrum disorder (MONDO:0005258)
Review for gene: CTR9 was set to GREEN
Added comment: PMID: 35499524 - Thirteen individuals with variables degrees of intellectual disability, hypotonia, joint hyperlaxity, speech delay, coordination problems, tremor, autism spectrum disorder. Mild dysmorphism and cardiac anomalies were less frequent. Eleven of the variants were shown to be de novo.
Sources: Literature
Anophthalmia_Microphthalmia_Coloboma v1.18 BMPR1B Ain Roesley edited their review of gene: BMPR1B: Changed rating: GREEN
Mendeliome v0.13791 TULP3 Zornitza Stark Marked gene: TULP3 as ready
Mendeliome v0.13791 TULP3 Zornitza Stark Gene: tulp3 has been classified as Green List (High Evidence).
Anophthalmia_Microphthalmia_Coloboma v1.18 BMPR1B Ain Roesley gene: BMPR1B was added
gene: BMPR1B was added to Anophthalmia_Microphthalmia_Coloboma. Sources: Literature
Mode of inheritance for gene: BMPR1B was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: BMPR1B were set to 35034853
Phenotypes for gene: BMPR1B were set to coloboma MONDO#0001476, BMPR1B-related
gene: BMPR1B was marked as current diagnostic
Added comment: 4 unrelated families with AD coloboma
Sources: Literature
Mendeliome v0.13791 TULP3 Zornitza Stark Classified gene: TULP3 as Green List (high evidence)
Mendeliome v0.13791 TULP3 Zornitza Stark Gene: tulp3 has been classified as Green List (High Evidence).
Mendeliome v0.13791 BMPR1B Ain Roesley Phenotypes for gene: BMPR1B were changed from Acromesomelic dysplasia, Demirhan type, MIM# 609441; Brachydactyly, type A1, D, MIM# 616849; Brachydactyly, type A2, MIM# 112600 to Acromesomelic dysplasia, Demirhan type, MIM# 609441; Brachydactyly, type A1, D, MIM# 616849; Brachydactyly, type A2, MIM# 112600; coloboma MONDO#0001476, BMPR1B-related
Mendeliome v0.13790 BMPR1B Ain Roesley Publications for gene: BMPR1B were set to 15805157; 24129431; 26105076; 25758993; 14523231; 14523231
Mendeliome v0.13789 BMPR1B Ain Roesley reviewed gene: BMPR1B: Rating: GREEN; Mode of pathogenicity: None; Publications: 35034853; Phenotypes: coloboma MONDO#0001476, BMPR1B-related; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Microcephaly v1.120 PPFIBP1 Zornitza Stark Marked gene: PPFIBP1 as ready
Microcephaly v1.120 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Deafness_IsolatedAndComplex v1.127 CD164 Alison Yeung Publications for gene: CD164 were set to 26197441; 35254497; 26197441
Microcephaly v1.120 DROSHA Lucy Spencer gene: DROSHA was added
gene: DROSHA was added to Microcephaly. Sources: Literature
Mode of inheritance for gene: DROSHA was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: DROSHA were set to 35405010
Phenotypes for gene: DROSHA were set to Neurodevelopmental disorder (MONDO#0700092), DROSHA-related
Review for gene: DROSHA was set to AMBER
Added comment: 2 individuals with profound intellectual disability, epilepsy, white matter atrophy, microcephaly, and dysmorphic features, who carry damaging de novo heterozygous variants in DROSHA. Both variants are missense, absent from gnomad. Both individuals noted to have Rett-like features.

Functional studies in patient fibroblasts showed one of the missense altered the expression of mature miRNA. Fruit fly models with homozygous LOF variants die during larval stages. introduction of the missense seen in the patients was able to partially rescue this phenotype suggesting LOF is not the mechanism.
Sources: Literature
Deafness_IsolatedAndComplex v1.126 CD164 Alison Yeung Publications for gene: CD164 were set to 26197441; 35254497; 26197441
Deafness_IsolatedAndComplex v1.126 CD164 Alison Yeung Publications for gene: CD164 were set to 26197441
Genetic Epilepsy v0.1588 DROSHA Lucy Spencer gene: DROSHA was added
gene: DROSHA was added to Genetic Epilepsy. Sources: Literature
Mode of inheritance for gene: DROSHA was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: DROSHA were set to 35405010
Phenotypes for gene: DROSHA were set to Neurodevelopmental disorder (MONDO#0700092), DROSHA-related
Review for gene: DROSHA was set to AMBER
Added comment: 2 individuals with profound intellectual disability, epilepsy, white matter atrophy, microcephaly, and dysmorphic features, who carry damaging de novo heterozygous variants in DROSHA. Both variants are missense, absent from gnomad. Both individuals noted to have Rett-like features.

Functional studies in patient fibroblasts showed one of the missense altered the expression of mature miRNA. Fruit fly models with homozygous LOF variants die during larval stages. introduction of the missense seen in the patients was able to partially rescue this phenotype suggesting LOF is not the mechanism.
Sources: Literature
Deafness_IsolatedAndComplex v1.125 CD164 Alison Yeung Classified gene: CD164 as Green List (high evidence)
Deafness_IsolatedAndComplex v1.125 CD164 Alison Yeung Gene: cd164 has been classified as Green List (High Evidence).
Mendeliome v0.13789 DNAH14 Chern Lim gene: DNAH14 was added
gene: DNAH14 was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: DNAH14 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: DNAH14 were set to PMID: 35438214
Phenotypes for gene: DNAH14 were set to Neurodevelopmental disorder, DNAH14-related (MONDO#0700092)
Review for gene: DNAH14 was set to GREEN
gene: DNAH14 was marked as current diagnostic
Added comment: PMID: 35438214:
- Three previously unreported patients with compound heterozygous DNAH14 variants, including one nonsense, one frameshift, and four missense variants. A spectrum of neurological and developmental phenotypes was observed, including seizures, global developmental delay, microcephaly, and hypotonia.
Sources: Literature
Deafness_IsolatedAndComplex v1.125 CD164 Alison Yeung Classified gene: CD164 as Green List (high evidence)
Deafness_IsolatedAndComplex v1.125 CD164 Alison Yeung Gene: cd164 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4740 DROSHA Lucy Spencer gene: DROSHA was added
gene: DROSHA was added to Intellectual disability syndromic and non-syndromic. Sources: Literature
Mode of inheritance for gene: DROSHA was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: DROSHA were set to 35405010
Phenotypes for gene: DROSHA were set to Neurodevelopmental disorder (MONDO#0700092), DROSHA-related
Review for gene: DROSHA was set to AMBER
Added comment: 2 individuals with profound intellectual disability, epilepsy, white matter atrophy, microcephaly, and dysmorphic features, who carry damaging de novo heterozygous variants in DROSHA. Both variants are missense, absent from gnomad. Both individuals noted to have Rett-like features.

Functional studies in patient fibroblasts showed one of the missense altered the expression of mature miRNA. Fruit fly models with homozygous LOF variants die during larval stages. introduction of the missense seen in the patients was able to partially rescue this phenotype suggesting LOF is not the mechanism.
Sources: Literature
Anophthalmia_Microphthalmia_Coloboma v1.17 ANK3 Ain Roesley Marked gene: ANK3 as ready
Anophthalmia_Microphthalmia_Coloboma v1.17 ANK3 Ain Roesley Gene: ank3 has been classified as Amber List (Moderate Evidence).
Anophthalmia_Microphthalmia_Coloboma v1.17 ANK3 Ain Roesley Classified gene: ANK3 as Amber List (moderate evidence)
Anophthalmia_Microphthalmia_Coloboma v1.17 ANK3 Ain Roesley Gene: ank3 has been classified as Amber List (Moderate Evidence).
Anophthalmia_Microphthalmia_Coloboma v1.16 ANK3 Ain Roesley gene: ANK3 was added
gene: ANK3 was added to Anophthalmia_Microphthalmia_Coloboma. Sources: Literature
Mode of inheritance for gene: ANK3 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: ANK3 were set to 35034853
Phenotypes for gene: ANK3 were set to coloboma MONDO#0001476, ANK3-related
Review for gene: ANK3 was set to AMBER
gene: ANK3 was marked as current diagnostic
Added comment: 2 unrelated families with missense - 1x de novo and 1x unknown inheritance

zebrafish KO model
Sources: Literature
Mendeliome v0.13789 ANK3 Ain Roesley Phenotypes for gene: ANK3 were changed from Mental retardation, autosomal recessive, 37 615493; Intellectual disability, autosomal dominant; coloboma MONDO#0001476, ANK3-related to Mental retardation, autosomal recessive, 37 615493; Intellectual disability, autosomal dominant; coloboma MONDO#0001476, ANK3-related
Incidentalome v0.93 MBD4 Alison Yeung Publications for gene: MBD4 were set to 35460607
Mendeliome v0.13788 PRDM13 Zornitza Stark Phenotypes for gene: PRDM13 were changed from Retinal dystrophy; Chorioretinal atrophy, progressive bifocal, MIM# 600790; intellectual disability, MONDO:0001071, PRDM13-associated; ataxia with cerebellar hypoplasia, MONDO:0016054, PRDM13-associated; congenital hypogonadotropic hypogonadism, MONDO:0015770 to Retinal dystrophy; Chorioretinal atrophy, progressive bifocal, MIM# 600790; intellectual disability, MONDO:0001071, PRDM13-associated; ataxia with cerebellar hypoplasia, MONDO:0016054, PRDM13-associated; congenital hypogonadotropic hypogonadism, MONDO:0015770
Mendeliome v0.13788 ANK3 Ain Roesley Phenotypes for gene: ANK3 were changed from Mental retardation, autosomal recessive, 37 615493; Intellectual disability, autosomal dominant to Mental retardation, autosomal recessive, 37 615493; Intellectual disability, autosomal dominant; coloboma MONDO#0001476, ANK3-related
Mendeliome v0.13789 KCNH5 Elena Savva Classified gene: KCNH5 as Green List (high evidence)
Mendeliome v0.13789 KCNH5 Elena Savva Gene: kcnh5 has been classified as Green List (High Evidence).
Mendeliome v0.13788 ANK3 Ain Roesley Publications for gene: ANK3 were set to 23390136; 28687526; 34218362
Mendeliome v0.13787 TULP3 Anna Ritchie gene: TULP3 was added
gene: TULP3 was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: TULP3 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: TULP3 were set to PMID: 35397207
Phenotypes for gene: TULP3 were set to progressive degenerative liver fibrosis with variable fibrocystic kidney disease; hypertrophic cardiomyopathy MONDO:0005045
Review for gene: TULP3 was set to GREEN
Added comment: 15 individuals from eight unrelated families with bi-allelic variants in TULP3 were detected. The affected individuals reported are mostly adults, in the 3rd through 7th decades of life, and presented with progressive degenerative liver fibrosis with variable fibrocystic kidney disease and hypertrophic cardiomyopathy.

The human phenotype was ecapitulated in adult zebrafish and confirmed disruption of critical ciliary cargo composition in several primary cell lines derived from affected individuals
Sources: Literature
Deafness_IsolatedAndComplex v1.124 CD164 Michelle Torres reviewed gene: CD164: Rating: GREEN; Mode of pathogenicity: None; Publications: 35254497, 26197441; Phenotypes: autosomal dominant nonsyndromic hearing loss MONDO:0019587 CD164-related; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Incidentalome v0.93 MBD4 Alison Yeung Publications for gene: MBD4 were set to 35460607
Mendeliome v0.13787 ANK3 Ain Roesley reviewed gene: ANK3: Rating: AMBER; Mode of pathogenicity: None; Publications: 35034853; Phenotypes: coloboma MONDO#0001476, ANK3-related; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Incidentalome v0.92 MBD4 Alison Yeung Publications for gene: MBD4 were set to https://www.biorxiv.org/content/10.1101/2021.04.27.441137v1.full.pdf; 35460607
Intellectual disability syndromic and non-syndromic v0.4740 KCNH5 Elena Savva Classified gene: KCNH5 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4740 KCNH5 Elena Savva Gene: kcnh5 has been classified as Green List (High Evidence).
Mendeliome v0.13787 PRDM13 Zornitza Stark Publications for gene: PRDM13 were set to 30710461; 34730112
Intellectual disability syndromic and non-syndromic v0.4740 KCNH5 Elena Savva Classified gene: KCNH5 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4740 KCNH5 Elena Savva Gene: kcnh5 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4740 KCNH5 Elena Savva Classified gene: KCNH5 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4740 KCNH5 Elena Savva Gene: kcnh5 has been classified as Green List (High Evidence).
Incidentalome v0.92 MBD4 Alison Yeung Publications for gene: MBD4 were set to https://www.biorxiv.org/content/10.1101/2021.04.27.441137v1.full.pdf
Genetic Epilepsy v0.1588 KCNH5 Elena Savva Classified gene: KCNH5 as Green List (high evidence)
Genetic Epilepsy v0.1588 KCNH5 Elena Savva Gene: kcnh5 has been classified as Green List (High Evidence).
Mendeliome v0.13786 DROSHA Zornitza Stark Marked gene: DROSHA as ready
Mendeliome v0.13786 DROSHA Zornitza Stark Gene: drosha has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13786 DROSHA Zornitza Stark Classified gene: DROSHA as Amber List (moderate evidence)
Mendeliome v0.13786 DROSHA Zornitza Stark Gene: drosha has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13786 KCNH5 Elena Savva Classified gene: KCNH5 as Green List (high evidence)
Mendeliome v0.13786 KCNH5 Elena Savva Gene: kcnh5 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4739 KCNH5 Elena Savva Marked gene: KCNH5 as ready
Intellectual disability syndromic and non-syndromic v0.4739 KCNH5 Elena Savva Gene: kcnh5 has been classified as Red List (Low Evidence).
Genetic Epilepsy v0.1587 KCNH5 Elena Savva Marked gene: KCNH5 as ready
Genetic Epilepsy v0.1587 KCNH5 Elena Savva Gene: kcnh5 has been classified as Red List (Low Evidence).
Incidentalome v0.91 MBD4 Alison Yeung Phenotypes for gene: MBD4 were changed from AML and colorectal polyps; MBD4-associated neoplasia syndrome to Hereditary neoplastic syndrome, MBD4-associated MONDO:0015356
Incidentalome v0.90 MBD4 Chern Lim edited their review of gene: MBD4: Added comment: PMID:35460607: Biallelic loss-of-function germline variants in four families with five individuals with adenomatous colorectal polyposis, acute myeloid leukemia, and uveal melanoma.

PMID:35381620: A 37-year-old man presented with symptomatic anaemia and pancytopenia, a diagnosis of myelodysplastic syndrome with ring sideroblasts and multilineage dysplasia (MDS-RS-MLD) was made on bone marrow biopsy, patient has a homozygous missense variant in the germline.; Changed rating: GREEN
Intellectual disability syndromic and non-syndromic v0.4739 DTYMK Zornitza Stark Phenotypes for gene: DTYMK were changed from Intellectual disability; microcephaly to Neurodegeneration, childhood-onset, with progressive microcephaly (MIM# 619847)
Regression v0.471 STX1A Ain Roesley Marked gene: STX1A as ready
Regression v0.471 STX1A Ain Roesley Gene: stx1a has been classified as Amber List (Moderate Evidence).
Regression v0.471 STX1A Ain Roesley Classified gene: STX1A as Amber List (moderate evidence)
Regression v0.471 STX1A Ain Roesley Gene: stx1a has been classified as Amber List (Moderate Evidence).
Regression v0.470 STX1A Ain Roesley gene: STX1A was added
gene: STX1A was added to Regression. Sources: Literature
Mode of inheritance for gene: STX1A was set to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes for gene: STX1A were set to neurodevelopmental disorder MONDO#0700092, STX1A-related
Review for gene: STX1A was set to AMBER
gene: STX1A was marked as current diagnostic
Added comment: Preprint: https://www.medrxiv.org/content/10.1101/2022.04.20.22274073v1
8 individuals - 2x hom (related) and 6x hets (all de novo except 1x unknown)

7 unrelated since the 2 siblings share similar features:
7/7 ID, 7/7 motor delay, 4/7 epilepsy, 5/7 neonatal hypotonia 2/7 regression, 2/7 ASD excluding 1 with features but did not meet criteria
Sources: Literature
Intellectual disability syndromic and non-syndromic v0.4738 DTYMK Zornitza Stark Publications for gene: DTYMK were set to 31271740
Intellectual disability syndromic and non-syndromic v0.4737 DTYMK Zornitza Stark Classified gene: DTYMK as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4737 DTYMK Zornitza Stark Gene: dtymk has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1587 STX1A Ain Roesley Marked gene: STX1A as ready
Genetic Epilepsy v0.1587 STX1A Ain Roesley Gene: stx1a has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1587 STX1A Ain Roesley Classified gene: STX1A as Green List (high evidence)
Genetic Epilepsy v0.1587 STX1A Ain Roesley Gene: stx1a has been classified as Green List (High Evidence).
Incidentalome v0.90 MBD4 Alison Yeung Classified gene: MBD4 as Green List (high evidence)
Incidentalome v0.90 MBD4 Alison Yeung Gene: mbd4 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1586 STX1A Ain Roesley gene: STX1A was added
gene: STX1A was added to Genetic Epilepsy. Sources: Literature
Mode of inheritance for gene: STX1A was set to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes for gene: STX1A were set to neurodevelopmental disorder MONDO#0700092, STX1A-related
Review for gene: STX1A was set to GREEN
gene: STX1A was marked as current diagnostic
Added comment: Preprint: https://www.medrxiv.org/content/10.1101/2022.04.20.22274073v1
8 individuals - 2x hom (related) and 6x hets (all de novo except 1x unknown)

7 unrelated since the 2 siblings share similar features:
7/7 ID, 7/7 motor delay, 4/7 epilepsy, 5/7 neonatal hypotonia 2/7 regression, 2/7 ASD excluding 1 with features but did not meet criteria
Sources: Literature
Genetic Epilepsy v0.1585 PPFIBP1 Zornitza Stark Marked gene: PPFIBP1 as ready
Genetic Epilepsy v0.1585 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Microcephaly v1.120 PPFIBP1 Zornitza Stark Classified gene: PPFIBP1 as Green List (high evidence)
Microcephaly v1.120 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Microcephaly v1.119 PPFIBP1 Zornitza Stark gene: PPFIBP1 was added
gene: PPFIBP1 was added to Microcephaly. Sources: Expert Review
Mode of inheritance for gene: PPFIBP1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: PPFIBP1 were set to https://www.medrxiv.org/content/10.1101/2022.04.04.22273309v1
Phenotypes for gene: PPFIBP1 were set to Neurodevelopmental disorder, MONDO:0700092, PPFIBP1-related
Review for gene: PPFIBP1 was set to GREEN
Added comment: 16 individuals from 10 unrelated families reported with moderate to profound developmental delay, often refractory early-onset epilepsy and progressive microcephaly. Drosophila model.
Sources: Expert Review
Intellectual disability syndromic and non-syndromic v0.4736 PPFIBP1 Zornitza Stark Marked gene: PPFIBP1 as ready
Intellectual disability syndromic and non-syndromic v0.4736 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4736 KCNH5 Elena Savva gene: KCNH5 was added
gene: KCNH5 was added to Intellectual disability syndromic and non-syndromic. Sources: Literature
Mode of inheritance for gene: KCNH5 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: KCNH5 were set to https://www.medrxiv.org/content/10.1101/2022.04.26.22274147v1
Phenotypes for gene: KCNH5 were set to Neurodevelopmental disorder MONDO#0700092, KCNH5-related
Mode of pathogenicity for gene: KCNH5 was set to Other
Review for gene: KCNH5 was set to GREEN
Added comment: Happ (2022), preprint: Screen of 893 patients with DEE found 17 patients with missense variants (16/17 de novo, 1/17 inherited). GOF mechanism suggested.
Patient phenotypes included focal/generalized seizures, Cognitive outcome for the ten individuals >5 years ranged from normal (3/10) to mild (3/10), moderate (2/10), severe (1/10) and profound (1/10) intellectual disability (ID)

p.Arg327His (7 probands), p.Arg333His (4 probands) were recurring
Sources: Literature
Genetic Epilepsy v0.1585 KCNH5 Elena Savva gene: KCNH5 was added
gene: KCNH5 was added to Genetic Epilepsy. Sources: Literature
Mode of inheritance for gene: KCNH5 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: KCNH5 were set to https://www.medrxiv.org/content/10.1101/2022.04.26.22274147v1
Phenotypes for gene: KCNH5 were set to Neurodevelopmental disorder MONDO#0700092, KCNH5-related
Mode of pathogenicity for gene: KCNH5 was set to Other
Review for gene: KCNH5 was set to GREEN
Added comment: Happ (2022), preprint: Screen of 893 patients with DEE found 17 patients with missense variants (16/17 de novo, 1/17 inherited). GOF mechanism suggested.
Patient phenotypes included focal/generalized seizures, Cognitive outcome for the ten individuals >5 years ranged from normal (3/10) to mild (3/10), moderate (2/10), severe (1/10) and profound (1/10) intellectual disability (ID)

p.Arg327His (7 probands), p.Arg333His (4 probands) were recurring
Sources: Literature
Genetic Epilepsy v0.1585 PPFIBP1 Zornitza Stark Classified gene: PPFIBP1 as Green List (high evidence)
Genetic Epilepsy v0.1585 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4735 PPFIBP1 Zornitza Stark Classified gene: PPFIBP1 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4735 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Mendeliome v0.13785 KCNH5 Elena Savva Phenotypes for gene: KCNH5 were changed from Neurodevelopmental disorders to Neurodevelopmental disorder MONDO#0700092, KCNH5-related
Intellectual disability syndromic and non-syndromic v0.4735 STX1A Ain Roesley Classified gene: STX1A as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4735 STX1A Ain Roesley Gene: stx1a has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1584 PPFIBP1 Zornitza Stark gene: PPFIBP1 was added
gene: PPFIBP1 was added to Genetic Epilepsy. Sources: Expert Review
Mode of inheritance for gene: PPFIBP1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: PPFIBP1 were set to https://www.medrxiv.org/content/10.1101/2022.04.04.22273309v1
Phenotypes for gene: PPFIBP1 were set to Neurodevelopmental disorder, MONDO:0700092, PPFIBP1-related
Review for gene: PPFIBP1 was set to GREEN
Added comment: 16 individuals from 10 unrelated families reported with moderate to profound developmental delay, often refractory early-onset epilepsy and progressive microcephaly. Drosophila model.
Sources: Expert Review
Intellectual disability syndromic and non-syndromic v0.4734 PPFIBP1 Zornitza Stark Classified gene: PPFIBP1 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4734 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4734 STX1A Ain Roesley Classified gene: STX1A as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4734 STX1A Ain Roesley Gene: stx1a has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4733 STX1A Ain Roesley Marked gene: STX1A as ready
Intellectual disability syndromic and non-syndromic v0.4733 STX1A Ain Roesley Gene: stx1a has been classified as Red List (Low Evidence).
Mendeliome v0.13784 EFEMP1 Alison Yeung reviewed gene: EFEMP1: Rating: GREEN; Mode of pathogenicity: None; Publications: 34923728; Phenotypes: Juvenile-onset open angle glaucoma, MONDO:0020367, EFEMP1-related; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Intellectual disability syndromic and non-syndromic v0.4733 STX1A Ain Roesley gene: STX1A was added
gene: STX1A was added to Intellectual disability syndromic and non-syndromic. Sources: Literature
Mode of inheritance for gene: STX1A was set to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes for gene: STX1A were set to neurodevelopmental disorder MONDO#0700092, STX1A-related
Review for gene: STX1A was set to GREEN
gene: STX1A was marked as current diagnostic
Added comment: Preprint: https://www.medrxiv.org/content/10.1101/2022.04.20.22274073v1
8 individuals - 2x hom (related) and 6x hets (all de novo except 1x unknown)

7 unrelated since the 2 siblings share similar features:
7/7 ID, 7/7 motor delay, 4/7 epilepsy, 5/7 neonatal hypotonia 2/7 regression, 2/7 ASD excluding 1 with features but did not meet criteria
Sources: Literature
Mendeliome v0.13784 PRDM13 Dean Phelan reviewed gene: PRDM13: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 35390279; Phenotypes: Pontocerebellar hypoplasia (MONDO:0020135), PRDM13 related; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13784 DROSHA Lucy Spencer gene: DROSHA was added
gene: DROSHA was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: DROSHA was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: DROSHA were set to 35405010
Phenotypes for gene: DROSHA were set to Neurodevelopmental disorder (MONDO#0700092), DROSHA-related
Review for gene: DROSHA was set to AMBER
Added comment: 2 individuals with profound intellectual disability, epilepsy, white matter atrophy, microcephaly, and dysmorphic features, who carry damaging de novo heterozygous variants in DROSHA. Both variants are missense, absent from gnomad. Both individuals noted to have Rett-like features.

Functional studies in patient fibroblasts showed one of the missense altered the expression of mature miRNA. Fruit fly models with homozygous LOF variants die during larval stages. introduction of the missense seen in the patients was able to partially rescue this phenotype suggesting LOF is not the mechanism.
Sources: Literature
Mendeliome v0.13784 KCNH5 Elena Savva gene: KCNH5 was added
gene: KCNH5 was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: KCNH5 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Publications for gene: KCNH5 were set to https://www.medrxiv.org/content/10.1101/2022.04.26.22274147v1
Phenotypes for gene: KCNH5 were set to Neurodevelopmental disorders
Mode of pathogenicity for gene: KCNH5 was set to Other
Review for gene: KCNH5 was set to GREEN
Added comment: Happ (2022), preprint: Screen of 893 patients with DEE found 17 patients with missense variants (16/17 de novo, 1/17 inherited). GOF mechanism suggested.
Patient phenotypes included focal/generalized seizures, Cognitive outcome for the ten individuals >5 years ranged from normal (3/10) to mild (3/10), moderate (2/10), severe (1/10) and profound (1/10) intellectual disability (ID)

p.Arg327His (7 probands), p.Arg333His (4 probands) were recurring
Sources: Literature
Intellectual disability syndromic and non-syndromic v0.4732 PPFIBP1 Zornitza Stark gene: PPFIBP1 was added
gene: PPFIBP1 was added to Intellectual disability syndromic and non-syndromic. Sources: Expert Review
Mode of inheritance for gene: PPFIBP1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: PPFIBP1 were set to https://www.medrxiv.org/content/10.1101/2022.04.04.22273309v1
Phenotypes for gene: PPFIBP1 were set to Neurodevelopmental disorder, MONDO:0700092, PPFIBP1-related
Review for gene: PPFIBP1 was set to GREEN
Added comment: 16 individuals from 10 unrelated families reported with moderate to profound developmental delay, often refractory early-onset epilepsy and progressive microcephaly. Drosophila model.
Sources: Expert Review
Mendeliome v0.13783 PPFIBP1 Zornitza Stark Marked gene: PPFIBP1 as ready
Mendeliome v0.13783 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Mendeliome v0.13783 STX1A Ain Roesley Marked gene: STX1A as ready
Mendeliome v0.13783 STX1A Ain Roesley Gene: stx1a has been classified as Green List (High Evidence).
Mendeliome v0.13783 STX1A Ain Roesley Phenotypes for gene: STX1A were changed from to neurodevelopmental disorder MONDO#0700092, STX1A-related
Mendeliome v0.13783 PPFIBP1 Zornitza Stark Phenotypes for gene: PPFIBP1 were changed from Neurodevelopmental disorder, MONDO:0700092 to Neurodevelopmental disorder, MONDO:0700092, PPFIBP1-related
Mendeliome v0.13782 STX1A Ain Roesley changed review comment from: Preprint:
8 individuals - 2x hom (related) and 6x hets (all de novo except 1x unknown)

7 unrelated since the 2 siblings share similar features:
7/7 ID, 7/7 motor delay, 4/7 epilepsy, 5/7 neonatal hypotonia 2/7 regression, 2/7 ASD excluding 1 with features but did not meet criteria
Sources: Literature; to: Preprint: https://www.medrxiv.org/content/10.1101/2022.04.20.22274073v1
8 individuals - 2x hom (related) and 6x hets (all de novo except 1x unknown)

7 unrelated since the 2 siblings share similar features:
7/7 ID, 7/7 motor delay, 4/7 epilepsy, 5/7 neonatal hypotonia 2/7 regression, 2/7 ASD excluding 1 with features but did not meet criteria
Sources: Literature
Mendeliome v0.13782 PPFIBP1 Zornitza Stark Classified gene: PPFIBP1 as Green List (high evidence)
Mendeliome v0.13782 PPFIBP1 Zornitza Stark Gene: ppfibp1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4731 DTYMK Daniel Flanagan reviewed gene: DTYMK: Rating: GREEN; Mode of pathogenicity: None; Publications: 34918187; Phenotypes: Neurodegeneration, childhood-onset, with progressive microcephaly (MIM# 619847); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13781 STX1A Ain Roesley edited their review of gene: STX1A: Changed phenotypes: neurodevelopmental disorder MONDO#0700092, STX1A-related
Glaucoma congenital v1.5 EFEMP1 Alison Yeung Classified gene: EFEMP1 as Green List (high evidence)
Glaucoma congenital v1.5 EFEMP1 Alison Yeung Gene: efemp1 has been classified as Green List (High Evidence).
Incidentalome v0.89 MBD4 Chern Lim reviewed gene: MBD4: Rating: AMBER; Mode of pathogenicity: None; Publications: PMID:35460607; Phenotypes: Adenomatous colorectal polyposis, acute myeloid leukemia, and uveal melanoma; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Glaucoma congenital v1.5 EFEMP1 Alison Yeung Marked gene: EFEMP1 as ready
Glaucoma congenital v1.5 EFEMP1 Alison Yeung Gene: efemp1 has been classified as Green List (High Evidence).
Glaucoma congenital v1.5 EFEMP1 Alison Yeung Classified gene: EFEMP1 as Green List (high evidence)
Glaucoma congenital v1.5 EFEMP1 Alison Yeung Gene: efemp1 has been classified as Green List (High Evidence).
Mendeliome v0.13781 PPFIBP1 Zornitza Stark gene: PPFIBP1 was added
gene: PPFIBP1 was added to Mendeliome. Sources: Expert Review
Mode of inheritance for gene: PPFIBP1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: PPFIBP1 were set to https://www.medrxiv.org/content/10.1101/2022.04.04.22273309v1
Phenotypes for gene: PPFIBP1 were set to Neurodevelopmental disorder, MONDO:0700092
Review for gene: PPFIBP1 was set to GREEN
Added comment: 16 individuals from 10 unrelated families reported with moderate to profound developmental delay, often refractory early-onset epilepsy and progressive microcephaly. Drosophila model.
Sources: Expert Review
Glaucoma congenital v1.4 EFEMP1 Alison Yeung gene: EFEMP1 was added
gene: EFEMP1 was added to Glaucoma congenital. Sources: Literature
Mode of inheritance for gene: EFEMP1 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: EFEMP1 were set to 34923728
Phenotypes for gene: EFEMP1 were set to Juvenile-onset open angle glaucoma, MONDO:0020367, EFEMP1-related
Penetrance for gene: EFEMP1 were set to unknown
Review for gene: EFEMP1 was set to GREEN
Added comment: Three unrelated Filipino families, total of 34 individuals. Variants segregate with disease.
Disease onset average age of 16 years.
Functional studies: transfected cells exhibit protein aggregation
Sources: Literature
Mendeliome v0.13780 STX1A Ain Roesley Mode of inheritance for gene: STX1A was changed from BOTH monoallelic and biallelic, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13779 STX1A Ain Roesley Classified gene: STX1A as Green List (high evidence)
Mendeliome v0.13779 STX1A Ain Roesley Gene: stx1a has been classified as Green List (High Evidence).
Mendeliome v0.13778 STX1A Ain Roesley gene: STX1A was added
gene: STX1A was added to Mendeliome. Sources: Literature
Mode of inheritance for gene: STX1A was set to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Review for gene: STX1A was set to GREEN
gene: STX1A was marked as current diagnostic
Added comment: Preprint:
8 individuals - 2x hom (related) and 6x hets (all de novo except 1x unknown)

7 unrelated since the 2 siblings share similar features:
7/7 ID, 7/7 motor delay, 4/7 epilepsy, 5/7 neonatal hypotonia 2/7 regression, 2/7 ASD excluding 1 with features but did not meet criteria
Sources: Literature
Mendeliome v0.13777 HYDIN Zornitza Stark Marked gene: HYDIN as ready
Mendeliome v0.13777 HYDIN Zornitza Stark Gene: hydin has been classified as Green List (High Evidence).
Mendeliome v0.13777 HYDIN Zornitza Stark Phenotypes for gene: HYDIN were changed from to Ciliary dyskinesia, primary, 5 (MIM#608647)
Mendeliome v0.13776 HYDIN Zornitza Stark Publications for gene: HYDIN were set to
Mendeliome v0.13775 HYDIN Zornitza Stark Mode of inheritance for gene: HYDIN was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13774 HYDIN Zornitza Stark reviewed gene: HYDIN: Rating: GREEN; Mode of pathogenicity: None; Publications: 23022101, 23849777, 28441829, 31116566; Phenotypes: Ciliary dyskinesia, primary, 5 (MIM#608647); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13774 HTRA2 Zornitza Stark Marked gene: HTRA2 as ready
Mendeliome v0.13774 HTRA2 Zornitza Stark Gene: htra2 has been classified as Green List (High Evidence).
Mendeliome v0.13774 HTRA2 Zornitza Stark Phenotypes for gene: HTRA2 were changed from to 3-methylglutaconic aciduria, type VIII, MIM# 617248
Mendeliome v0.13773 HTRA2 Zornitza Stark Publications for gene: HTRA2 were set to
Mendeliome v0.13772 HTRA2 Zornitza Stark Mode of inheritance for gene: HTRA2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13771 HTRA2 Zornitza Stark reviewed gene: HTRA2: Rating: GREEN; Mode of pathogenicity: None; Publications: 27208207, 27696117; Phenotypes: 3-methylglutaconic aciduria, type VIII, MIM# 617248; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13771 HTR1A Zornitza Stark Marked gene: HTR1A as ready
Mendeliome v0.13771 HTR1A Zornitza Stark Gene: htr1a has been classified as Red List (Low Evidence).
Mendeliome v0.13771 HTR1A Zornitza Stark Phenotypes for gene: HTR1A were changed from to Periodic fever, menstrual cycle dependent, MIM# 614674
Mendeliome v0.13770 HTR1A Zornitza Stark Publications for gene: HTR1A were set to
Mendeliome v0.13769 HTR1A Zornitza Stark Mode of inheritance for gene: HTR1A was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13768 HTR1A Zornitza Stark Classified gene: HTR1A as Red List (low evidence)
Mendeliome v0.13768 HTR1A Zornitza Stark Gene: htr1a has been classified as Red List (Low Evidence).
Mendeliome v0.13767 HTR1A Zornitza Stark reviewed gene: HTR1A: Rating: RED; Mode of pathogenicity: None; Publications: 21990073; Phenotypes: Periodic fever, menstrual cycle dependent, MIM# 614674; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13767 HSPD1 Zornitza Stark Marked gene: HSPD1 as ready
Mendeliome v0.13767 HSPD1 Zornitza Stark Gene: hspd1 has been classified as Green List (High Evidence).
Mendeliome v0.13767 HSPD1 Zornitza Stark Phenotypes for gene: HSPD1 were changed from to Leukodystrophy, hypomyelinating, 4, MIM# 612233; Spastic paraplegia 13, autosomal dominant, MIM# 605280
Mendeliome v0.13766 HSPD1 Zornitza Stark Publications for gene: HSPD1 were set to
Mendeliome v0.13765 HSPD1 Zornitza Stark Mode of inheritance for gene: HSPD1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13764 HSPD1 Zornitza Stark reviewed gene: HSPD1: Rating: GREEN; Mode of pathogenicity: None; Publications: 18571143, 27405012, 32532876, 28377887, 27405012, 11898127, 17420924; Phenotypes: Leukodystrophy, hypomyelinating, 4, MIM# 612233, Spastic paraplegia 13, autosomal dominant, MIM# 605280; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13764 HSD3B7 Zornitza Stark Marked gene: HSD3B7 as ready
Mendeliome v0.13764 HSD3B7 Zornitza Stark Gene: hsd3b7 has been classified as Green List (High Evidence).
Mendeliome v0.13764 HSD3B7 Zornitza Stark Phenotypes for gene: HSD3B7 were changed from to Bile acid synthesis defect, congenital, 1 MIM#607765; Disorders of bile acid biosynthesis
Mendeliome v0.13763 HSD3B7 Zornitza Stark Publications for gene: HSD3B7 were set to
Mendeliome v0.13762 HSD3B7 Zornitza Stark Mode of inheritance for gene: HSD3B7 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Differences of Sex Development v0.254 HSD3B2 Zornitza Stark Marked gene: HSD3B2 as ready
Differences of Sex Development v0.254 HSD3B2 Zornitza Stark Gene: hsd3b2 has been classified as Green List (High Evidence).
Differences of Sex Development v0.254 HSD3B2 Zornitza Stark Phenotypes for gene: HSD3B2 were changed from to Adrenal hyperplasia, congenital, due to 3-beta-hydroxysteroid dehydrogenase 2 deficiency, MIM# 201810
Differences of Sex Development v0.253 HSD3B2 Zornitza Stark Publications for gene: HSD3B2 were set to
Differences of Sex Development v0.252 HSD3B2 Zornitza Stark Mode of inheritance for gene: HSD3B2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Differences of Sex Development v0.251 HSD3B2 Zornitza Stark reviewed gene: HSD3B2: Rating: GREEN; Mode of pathogenicity: None; Publications: 1363812, 18252794; Phenotypes: Adrenal hyperplasia, congenital, due to 3-beta-hydroxysteroid dehydrogenase 2 deficiency, MIM# 201810; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13761 HSD3B2 Zornitza Stark Marked gene: HSD3B2 as ready
Mendeliome v0.13761 HSD3B2 Zornitza Stark Gene: hsd3b2 has been classified as Green List (High Evidence).
Mendeliome v0.13761 HSD3B2 Zornitza Stark Phenotypes for gene: HSD3B2 were changed from to Adrenal hyperplasia, congenital, due to 3-beta-hydroxysteroid dehydrogenase 2 deficiency, MIM# 201810
Mendeliome v0.13760 HSD3B2 Zornitza Stark Publications for gene: HSD3B2 were set to
Mendeliome v0.13759 HSD3B2 Zornitza Stark Mode of inheritance for gene: HSD3B2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13758 HSD3B2 Zornitza Stark reviewed gene: HSD3B2: Rating: GREEN; Mode of pathogenicity: None; Publications: 1363812, 18252794; Phenotypes: Adrenal hyperplasia, congenital, due to 3-beta-hydroxysteroid dehydrogenase 2 deficiency, MIM# 201810; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13758 CPN1 Ain Roesley changed review comment from: only 1 probed reported thus far; to: only 1 proband reported thus far
Mendeliome v0.13758 CUBN Ain Roesley Marked gene: CUBN as ready
Mendeliome v0.13758 CUBN Ain Roesley Gene: cubn has been classified as Green List (High Evidence).
Mendeliome v0.13758 CUBN Ain Roesley Phenotypes for gene: CUBN were changed from to Imerslund-Grasbeck syndrome 1 MIM#261100 AR; [Proteinuria, chronic benign] MIM#618884
Mendeliome v0.13757 CUBN Ain Roesley Publications for gene: CUBN were set to
Mendeliome v0.13756 CUBN Ain Roesley Mode of inheritance for gene: CUBN was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13755 CUBN Ain Roesley reviewed gene: CUBN: Rating: GREEN; Mode of pathogenicity: None; Publications: 31613795, 21903995, 31497480; Phenotypes: Imerslund-Grasbeck syndrome 1 MIM#261100 AR, [Proteinuria, chronic benign] MIM#618884; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13755 CTSF Ain Roesley Marked gene: CTSF as ready
Mendeliome v0.13755 CTSF Ain Roesley Gene: ctsf has been classified as Green List (High Evidence).
Mendeliome v0.13755 CTSF Ain Roesley Publications for gene: CTSF were set to
Mendeliome v0.13755 CTSF Ain Roesley Phenotypes for gene: CTSF were changed from to Ceroid lipofuscinosis, neuronal, 13, Kufs type, MIM# 615362
Mendeliome v0.13754 CTSF Ain Roesley Mode of inheritance for gene: CTSF was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13753 CTSF Ain Roesley reviewed gene: CTSF: Rating: GREEN; Mode of pathogenicity: None; Publications: 28749476, 27668283, 27524508; Phenotypes: Ceroid lipofuscinosis, neuronal, 13, Kufs type, MIM# 615362; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13753 CTSC Ain Roesley Marked gene: CTSC as ready
Mendeliome v0.13753 CTSC Ain Roesley Gene: ctsc has been classified as Green List (High Evidence).
Mendeliome v0.13753 CTSC Ain Roesley Phenotypes for gene: CTSC were changed from to Haim-Munk syndrome MIM#245010; Papillon-Lefevre syndrome MIM#245000; Periodontitis 1, juvenile MIM#170650
Mendeliome v0.13752 CTSC Ain Roesley reviewed gene: CTSC: Rating: GREEN; Mode of pathogenicity: None; Publications: 11106356, 32601924, 10581027, 14974080, 10662808; Phenotypes: Haim-Munk syndrome MIM#245010, Papillon-Lefevre syndrome MIM#245000, Periodontitis 1, juvenile MIM#170650; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13752 CTSC Ain Roesley Publications for gene: CTSC were set to
Mendeliome v0.13751 CTSC Ain Roesley Mode of inheritance for gene: CTSC was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13750 CTNS Ain Roesley Marked gene: CTNS as ready
Mendeliome v0.13750 CTNS Ain Roesley Gene: ctns has been classified as Green List (High Evidence).
Mendeliome v0.13750 CTNS Ain Roesley Phenotypes for gene: CTNS were changed from to Cystinosis, atypical nephropathic MIM#219800; Cystinosis, late-onset juvenile or adolescent nephropathic MIM#219900; Cystinosis, nephropathic MIM#219800; Cystinosis, ocular nonnephropathic MIM#219750
Mendeliome v0.13749 CTNS Ain Roesley Publications for gene: CTNS were set to
Mendeliome v0.13748 CTNS Ain Roesley Mode of inheritance for gene: CTNS was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13747 CTNS Ain Roesley edited their review of gene: CTNS: Changed rating: GREEN
Mendeliome v0.13747 CTNS Ain Roesley Deleted their comment
Mendeliome v0.13747 CTNS Ain Roesley commented on gene: CTNS: Established association.

Genereviews PMID:20301574
Mendeliome v0.13747 CTNS Ain Roesley reviewed gene: CTNS: Rating: ; Mode of pathogenicity: None; Publications: 20301574, 9537412, 31068690; Phenotypes: Cystinosis, atypical nephropathic MIM#219800, Cystinosis, late-onset juvenile or adolescent nephropathic MIM#219900, Cystinosis, nephropathic MIM#219800, Cystinosis, ocular nonnephropathic MIM#219750; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13747 CTNNA1 Ain Roesley Marked gene: CTNNA1 as ready
Mendeliome v0.13747 CTNNA1 Ain Roesley Gene: ctnna1 has been classified as Green List (High Evidence).
Mendeliome v0.13747 CTNNA1 Ain Roesley Phenotypes for gene: CTNNA1 were changed from to Macular dystrophy, butterfly-shaped pigmentary, 2, MIM# 608970; Familial exudative vitreoretinopathy MONDO#0019516, CTNNA1-related
Mendeliome v0.13746 CTNNA1 Ain Roesley Publications for gene: CTNNA1 were set to
Mendeliome v0.13746 CTNNA1 Ain Roesley Mode of inheritance for gene: CTNNA1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13745 CTNNA1 Ain Roesley reviewed gene: CTNNA1: Rating: GREEN; Mode of pathogenicity: None; Publications: 26691986, 33497368; Phenotypes: Macular dystrophy, butterfly-shaped pigmentary, 2, MIM# 608970, Familial exudative vitreoretinopathy MONDO#0019516, CTNNA1-related; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13745 CTHRC1 Ain Roesley Marked gene: CTHRC1 as ready
Mendeliome v0.13745 CTHRC1 Ain Roesley Gene: cthrc1 has been classified as Red List (Low Evidence).
Mendeliome v0.13745 CTHRC1 Ain Roesley Phenotypes for gene: CTHRC1 were changed from to Barrett esophagus/esophageal adenocarcinoma MIM#614266
Mendeliome v0.13745 CTHRC1 Ain Roesley Publications for gene: CTHRC1 were set to
Mendeliome v0.13744 CTHRC1 Ain Roesley Classified gene: CTHRC1 as Red List (low evidence)
Mendeliome v0.13744 CTHRC1 Ain Roesley Gene: cthrc1 has been classified as Red List (Low Evidence).
Mendeliome v0.13743 CTHRC1 Ain Roesley reviewed gene: CTHRC1: Rating: RED; Mode of pathogenicity: None; Publications: 21791690; Phenotypes: Barrett esophagus/esophageal adenocarcinoma MIM#614266; Mode of inheritance: None; Current diagnostic: yes
Mendeliome v0.13743 CSRP3 Ain Roesley Marked gene: CSRP3 as ready
Mendeliome v0.13743 CSRP3 Ain Roesley Gene: csrp3 has been classified as Green List (High Evidence).
Mendeliome v0.13743 CSRP3 Ain Roesley Phenotypes for gene: CSRP3 were changed from to hypertrophic cardiomyopathy12 MIM#612124; dilated cardiomyopathy 1M MIM#607482
Mendeliome v0.13742 CSRP3 Ain Roesley Publications for gene: CSRP3 were set to
Mendeliome v0.13742 CSRP3 Ain Roesley Mode of inheritance for gene: CSRP3 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13741 CSRP3 Ain Roesley reviewed gene: CSRP3: Rating: GREEN; Mode of pathogenicity: None; Publications: 18505755, 30681346, 12507422, 14567970, 19412328; Phenotypes: hypertrophic cardiomyopathy12 MIM#612124, dilated cardiomyopathy 1M MIM#607482; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13741 CRYGS Ain Roesley Marked gene: CRYGS as ready
Mendeliome v0.13741 CRYGS Ain Roesley Gene: crygs has been classified as Green List (High Evidence).
Mendeliome v0.13741 CRYGS Ain Roesley Phenotypes for gene: CRYGS were changed from to Cataract 20, multiple types MIM#116100
Mendeliome v0.13740 CRYGS Ain Roesley Publications for gene: CRYGS were set to
Mendeliome v0.13740 CRYGS Ain Roesley Mode of inheritance for gene: CRYGS was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13739 CRYGS Ain Roesley reviewed gene: CRYGS: Rating: GREEN; Mode of pathogenicity: None; Publications: 34014271, 16141006, 18587492, 19262743; Phenotypes: Cataract 20, multiple types MIM#116100; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13739 CRYGB Ain Roesley Marked gene: CRYGB as ready
Mendeliome v0.13739 CRYGB Ain Roesley Gene: crygb has been classified as Red List (Low Evidence).
Mendeliome v0.13739 CRYGB Ain Roesley Phenotypes for gene: CRYGB were changed from to Cataract 39, multiple types, autosomal dominant MIM#615188
Mendeliome v0.13738 CRYGB Ain Roesley Mode of inheritance for gene: CRYGB was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13739 CRYGB Ain Roesley Publications for gene: CRYGB were set to
Mendeliome v0.13738 CRYGB Ain Roesley Classified gene: CRYGB as Red List (low evidence)
Mendeliome v0.13738 CRYGB Ain Roesley Gene: crygb has been classified as Red List (Low Evidence).
Mendeliome v0.13737 CRYGB Ain Roesley reviewed gene: CRYGB: Rating: RED; Mode of pathogenicity: None; Publications: 23288985; Phenotypes: Cataract 39, multiple types, autosomal dominant MIM#615188; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13737 CRYAB Ain Roesley Marked gene: CRYAB as ready
Mendeliome v0.13737 CRYAB Ain Roesley Gene: cryab has been classified as Green List (High Evidence).
Mendeliome v0.13737 CRYAB Ain Roesley Phenotypes for gene: CRYAB were changed from to Cataract 16, multiple types MIM#613763 AD, AR; Myopathy, myofibrillar, 2 MIM#608810 AD; Myopathy, myofibrillar, fatal infantile hypertonic, alpha-B crystallin-related MIM#613869 AR
Mendeliome v0.13736 CRYAB Ain Roesley Publications for gene: CRYAB were set to
Mendeliome v0.13736 CRYAB Ain Roesley Mode of inheritance for gene: CRYAB was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13735 CRYAB Ain Roesley reviewed gene: CRYAB: Rating: GREEN; Mode of pathogenicity: None; Publications: 31215171, 21337604, 21130652, 32420686, 33272090; Phenotypes: Cataract 16, multiple types MIM#613763 AD, AR, Myopathy, myofibrillar, 2 MIM#608810 AD, Myopathy, myofibrillar, fatal infantile hypertonic, alpha-B crystallin-related MIM#613869 AR; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13735 CRX Ain Roesley Marked gene: CRX as ready
Mendeliome v0.13735 CRX Ain Roesley Gene: crx has been classified as Green List (High Evidence).
Mendeliome v0.13735 CRX Ain Roesley Phenotypes for gene: CRX were changed from to Leber congenital amaurosis 7, MIM# 613829; Cone-rod retinal dystrophy-2 MIM#120970
Mendeliome v0.13734 CRX Ain Roesley Publications for gene: CRX were set to
Mendeliome v0.13734 CRX Ain Roesley Mode of inheritance for gene: CRX was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13733 CRX Ain Roesley reviewed gene: CRX: Rating: GREEN; Mode of pathogenicity: None; Publications: 12208271, 9931337, 9537410, 29568065, 27427859, 25270190, 32927963, 33910785; Phenotypes: Leber congenital amaurosis 7, MIM# 613829, Cone-rod retinal dystrophy-2 MIM#120970; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13733 CREB1 Ain Roesley Classified gene: CREB1 as Red List (low evidence)
Mendeliome v0.13733 CREB1 Ain Roesley Gene: creb1 has been classified as Red List (Low Evidence).
Mendeliome v0.13732 CREB1 Ain Roesley Marked gene: CREB1 as ready
Mendeliome v0.13732 CREB1 Ain Roesley Gene: creb1 has been classified as Green List (High Evidence).
Mendeliome v0.13732 CREB1 Ain Roesley Phenotypes for gene: CREB1 were changed from to corpus callosum agenesis; thyroid follicular hypoplasia
Mendeliome v0.13731 CREB1 Ain Roesley Publications for gene: CREB1 were set to
Mendeliome v0.13730 CREB1 Ain Roesley Mode of inheritance for gene: CREB1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13729 CREB1 Ain Roesley reviewed gene: CREB1: Rating: RED; Mode of pathogenicity: None; Publications: 22267179; Phenotypes: corpus callosum agenesis, thyroid follicular hypoplasia; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13729 SLC16A12 Samantha Ayres reviewed gene: SLC16A12: Rating: GREEN; Mode of pathogenicity: None; Publications: 20181839, 21778275, 18304496, 29088427, 34126080; Phenotypes: Cataract 47, juvenile, with microcornea, MIM# 612018; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13729 CRBN Ain Roesley Marked gene: CRBN as ready
Mendeliome v0.13729 CRBN Ain Roesley Gene: crbn has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13729 CRBN Ain Roesley Phenotypes for gene: CRBN were changed from to Intellectual developmental disorder, autosomal recessive 2 MIM#607417
Mendeliome v0.13728 CRBN Ain Roesley Mode of inheritance for gene: CRBN was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13729 CRBN Ain Roesley Publications for gene: CRBN were set to
Mendeliome v0.13728 CRBN Ain Roesley Classified gene: CRBN as Amber List (moderate evidence)
Mendeliome v0.13728 CRBN Ain Roesley Gene: crbn has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13727 CRBN Ain Roesley reviewed gene: CRBN: Rating: AMBER; Mode of pathogenicity: None; Publications: 15557513, 28143899; Phenotypes: Intellectual developmental disorder, autosomal recessive 2 MIM#607417; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13727 CRB1 Ain Roesley Marked gene: CRB1 as ready
Mendeliome v0.13727 CRB1 Ain Roesley Gene: crb1 has been classified as Green List (High Evidence).
Mendeliome v0.13727 CRB1 Ain Roesley Phenotypes for gene: CRB1 were changed from to Leber congenital amaurosis 8 MIM#613835; Pigmented paravenous chorioretinal atrophy MIM#172870; Retinitis pigmentosa-12 MIM#600105
Mendeliome v0.13726 CRB1 Ain Roesley Publications for gene: CRB1 were set to
Mendeliome v0.13726 CRB1 Ain Roesley Mode of inheritance for gene: CRB1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13725 CRB1 Ain Roesley reviewed gene: CRB1: Rating: GREEN; Mode of pathogenicity: None; Publications: 30285347, 32922261, 31884620, 15459956; Phenotypes: Leber congenital amaurosis 8 MIM#613835, Pigmented paravenous chorioretinal atrophy MIM#172870, Retinitis pigmentosa-12 MIM#600105; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13725 CPT1A Ain Roesley Marked gene: CPT1A as ready
Mendeliome v0.13725 CPT1A Ain Roesley Gene: cpt1a has been classified as Green List (High Evidence).
Mendeliome v0.13725 CPT1A Ain Roesley Phenotypes for gene: CPT1A were changed from to CPT deficiency, hepatic, type IA, MIM# 255120
Mendeliome v0.13724 CPT1A Ain Roesley Publications for gene: CPT1A were set to
Mendeliome v0.13724 CPT1A Ain Roesley Mode of inheritance for gene: CPT1A was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13723 CPT1A Ain Roesley reviewed gene: CPT1A: Rating: GREEN; Mode of pathogenicity: None; Publications: 12189492, 25778941, 23430932; Phenotypes: CPT deficiency, hepatic, type IA, MIM# 255120; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Intellectual disability syndromic and non-syndromic v0.4731 CPS1 Ain Roesley Phenotypes for gene: CPS1 were changed from Carbamoylphosphate synthetase I deficiency MIM#237300 to Carbamoylphosphate synthetase I deficiency MIM#237300
Intellectual disability syndromic and non-syndromic v0.4731 CPS1 Ain Roesley Publications for gene: CPS1 were set to 8486760; 17310273; 21120950; 31268178
Intellectual disability syndromic and non-syndromic v0.4730 CPS1 Ain Roesley Publications for gene: CPS1 were set to
Intellectual disability syndromic and non-syndromic v0.4730 CPS1 Ain Roesley Phenotypes for gene: CPS1 were changed from to Carbamoylphosphate synthetase I deficiency MIM#237300
Intellectual disability syndromic and non-syndromic v0.4730 CPS1 Ain Roesley Marked gene: CPS1 as ready
Intellectual disability syndromic and non-syndromic v0.4730 CPS1 Ain Roesley Gene: cps1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4730 CPS1 Ain Roesley Mode of inheritance for gene: CPS1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4729 CPS1 Ain Roesley reviewed gene: CPS1: Rating: GREEN; Mode of pathogenicity: None; Publications: 8486760, 17310273, 21120950, 31268178; Phenotypes: Carbamoylphosphate synthetase I deficiency MIM#237300; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13723 CPS1 Ain Roesley Marked gene: CPS1 as ready
Mendeliome v0.13723 CPS1 Ain Roesley Gene: cps1 has been classified as Green List (High Evidence).
Mendeliome v0.13723 CPS1 Ain Roesley Publications for gene: CPS1 were set to
Mendeliome v0.13722 CPS1 Ain Roesley Deleted their review
Mendeliome v0.13722 CPS1 Ain Roesley reviewed gene: CPS1: Rating: GREEN; Mode of pathogenicity: None; Publications: 8486760, 17310273, 21120950, 31268178; Phenotypes: Carbamoylphosphate synthetase I deficiency MIM#237300; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13722 CPOX Ain Roesley Marked gene: CPOX as ready
Mendeliome v0.13722 CPOX Ain Roesley Gene: cpox has been classified as Green List (High Evidence).
Mendeliome v0.13722 CPOX Ain Roesley Phenotypes for gene: CPOX were changed from to Coproporphyria, MIM#121300; Harderoporphyria, MIM#121300
Mendeliome v0.13722 CPOX Ain Roesley Publications for gene: CPOX were set to
Mendeliome v0.13721 CPOX Ain Roesley Mode of inheritance for gene: CPOX was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13720 CPOX Ain Roesley reviewed gene: CPOX: Rating: GREEN; Mode of pathogenicity: None; Publications: 30828546, 28349448, 23582006, 24156084; Phenotypes: Coproporphyria, MIM#121300, Harderoporphyria, MIM#121300; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13720 CPN1 Ain Roesley Marked gene: CPN1 as ready
Mendeliome v0.13720 CPN1 Ain Roesley Gene: cpn1 has been classified as Red List (Low Evidence).
Mendeliome v0.13720 CPN1 Ain Roesley Phenotypes for gene: CPN1 were changed from to Carboxypeptidase N deficiency MIM#212070
Mendeliome v0.13719 CPN1 Ain Roesley Publications for gene: CPN1 were set to
Mendeliome v0.13718 CPN1 Ain Roesley Mode of inheritance for gene: CPN1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13718 CPN1 Ain Roesley Classified gene: CPN1 as Red List (low evidence)
Mendeliome v0.13718 CPN1 Ain Roesley Gene: cpn1 has been classified as Red List (Low Evidence).
Mendeliome v0.13717 CPN1 Ain Roesley reviewed gene: CPN1: Rating: RED; Mode of pathogenicity: None; Publications: 12560874, 7437116; Phenotypes: Carboxypeptidase N deficiency MIM#212070; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13717 COMP Ain Roesley Marked gene: COMP as ready
Mendeliome v0.13717 COMP Ain Roesley Gene: comp has been classified as Green List (High Evidence).
Mendeliome v0.13717 HSD11B1 Zornitza Stark Marked gene: HSD11B1 as ready
Mendeliome v0.13717 HSD11B1 Zornitza Stark Gene: hsd11b1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13717 HSD11B1 Zornitza Stark Phenotypes for gene: HSD11B1 were changed from to Cortisone reductase deficiency 2, MIM# 614662
Mendeliome v0.13716 HSD11B1 Zornitza Stark Publications for gene: HSD11B1 were set to
Mendeliome v0.13715 HSD11B1 Zornitza Stark Mode of inheritance for gene: HSD11B1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13714 HSD11B1 Zornitza Stark Classified gene: HSD11B1 as Amber List (moderate evidence)
Mendeliome v0.13714 HSD11B1 Zornitza Stark Gene: hsd11b1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13713 HSD11B1 Zornitza Stark reviewed gene: HSD11B1: Rating: AMBER; Mode of pathogenicity: None; Publications: 21325058; Phenotypes: Cortisone reductase deficiency 2, MIM# 614662; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13713 SLC14A1 Samantha Ayres reviewed gene: SLC14A1: Rating: RED; Mode of pathogenicity: None; Publications: 28065763, 27834480; Phenotypes: [Blood group, Kidd], MIM#111000; Mode of inheritance: Unknown
Mendeliome v0.13713 SLC12A5 Samantha Ayres reviewed gene: SLC12A5: Rating: GREEN; Mode of pathogenicity: None; Publications: 26333769, 27436767, 24928908, 30763027, 24668262; Phenotypes: Developmental and epileptic encephalopathy 34, MIM# 616645, {Epilepsy, idiopathic generalized, susceptibility to, 14}, MIM# 616685; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Bleeding and Platelet Disorders v1.13 HRG Zornitza Stark Marked gene: HRG as ready
Bleeding and Platelet Disorders v1.13 HRG Zornitza Stark Gene: hrg has been classified as Green List (High Evidence).
Bleeding and Platelet Disorders v1.13 HRG Zornitza Stark Classified gene: HRG as Green List (high evidence)
Bleeding and Platelet Disorders v1.13 HRG Zornitza Stark Gene: hrg has been classified as Green List (High Evidence).
Bleeding and Platelet Disorders v1.12 HRG Zornitza Stark gene: HRG was added
gene: HRG was added to Bleeding and Platelet Disorders. Sources: Expert Review
Mode of inheritance for gene: HRG was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: HRG were set to 8236132; 11057869; 11057869; 29108964
Phenotypes for gene: HRG were set to Thrombophilia 11 due to HRG deficiency, MIM# 613116
Review for gene: HRG was set to GREEN
Added comment: Established gene-disease association.
Sources: Expert Review
Mendeliome v0.13713 HRG Zornitza Stark Marked gene: HRG as ready
Mendeliome v0.13713 HRG Zornitza Stark Gene: hrg has been classified as Green List (High Evidence).
Mendeliome v0.13713 HRG Zornitza Stark Phenotypes for gene: HRG were changed from to Thrombophilia 11 due to HRG deficiency, MIM# 613116
Mendeliome v0.13712 HRG Zornitza Stark Publications for gene: HRG were set to
Mendeliome v0.13711 HRG Zornitza Stark Mode of inheritance for gene: HRG was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13710 HRG Zornitza Stark reviewed gene: HRG: Rating: GREEN; Mode of pathogenicity: None; Publications: 8236132, 11057869, 11057869, 29108964; Phenotypes: Thrombophilia 11 due to HRG deficiency, MIM# 613116; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13710 HP Zornitza Stark Marked gene: HP as ready
Mendeliome v0.13710 HP Zornitza Stark Gene: hp has been classified as Red List (Low Evidence).
Mendeliome v0.13710 HP Zornitza Stark Phenotypes for gene: HP were changed from to [Anhaptoglobinemia] 614081; [Hypohaptoglobinemia] 614081
Mendeliome v0.13709 HP Zornitza Stark Classified gene: HP as Red List (low evidence)
Mendeliome v0.13709 HP Zornitza Stark Gene: hp has been classified as Red List (Low Evidence).
Mendeliome v0.13708 HP Zornitza Stark reviewed gene: HP: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: [Anhaptoglobinemia] 614081, [Hypohaptoglobinemia] 614081; Mode of inheritance: None
Mendeliome v0.13708 HOXD13 Zornitza Stark Marked gene: HOXD13 as ready
Mendeliome v0.13708 HOXD13 Zornitza Stark Gene: hoxd13 has been classified as Green List (High Evidence).
Mendeliome v0.13708 HOXD13 Zornitza Stark Phenotypes for gene: HOXD13 were changed from to Brachydactyly, type E 113300 Brachydactyly, type D, MIM# 113200; Syndactyly, type V, MIM# 186300; Synpolydactyly 1, MIM# 186000; Brachydactyly-syndactyly syndrome, MIM# 610713
Mendeliome v0.13707 HOXD13 Zornitza Stark Publications for gene: HOXD13 were set to
Mendeliome v0.13706 HOXD13 Zornitza Stark Mode of inheritance for gene: HOXD13 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13705 HOXD13 Zornitza Stark reviewed gene: HOXD13: Rating: GREEN; Mode of pathogenicity: None; Publications: 34777468, 32509852; Phenotypes: Brachydactyly, type E 113300 Brachydactyly, type D, MIM# 113200, Syndactyly, type V, MIM# 186300, Synpolydactyly 1, MIM# 186000, Brachydactyly-syndactyly syndrome, MIM# 610713; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13705 HOXA13 Zornitza Stark Marked gene: HOXA13 as ready
Mendeliome v0.13705 HOXA13 Zornitza Stark Gene: hoxa13 has been classified as Green List (High Evidence).
Mendeliome v0.13705 HOXA13 Zornitza Stark Phenotypes for gene: HOXA13 were changed from to Hand-foot-uterus syndrome, MIM# 140000
Mendeliome v0.13704 HOXA13 Zornitza Stark Publications for gene: HOXA13 were set to
Mendeliome v0.13703 HOXA13 Zornitza Stark Mode of inheritance for gene: HOXA13 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13702 HOXA13 Zornitza Stark reviewed gene: HOXA13: Rating: GREEN; Mode of pathogenicity: None; Publications: 10839976, 9020844; Phenotypes: Hand-foot-uterus syndrome, MIM# 140000; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13702 HOXA1 Zornitza Stark Marked gene: HOXA1 as ready
Mendeliome v0.13702 HOXA1 Zornitza Stark Gene: hoxa1 has been classified as Green List (High Evidence).
Mendeliome v0.13702 HOXA1 Zornitza Stark Phenotypes for gene: HOXA1 were changed from to Athabaskan brainstem dysgenesis syndrome MIM#601536; Bosley-Salih-Alorainy syndrome MIM#601536
Mendeliome v0.13701 HOXA1 Zornitza Stark Publications for gene: HOXA1 were set to
Mendeliome v0.13700 HOXA1 Zornitza Stark Mode of inheritance for gene: HOXA1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13699 HOXA1 Zornitza Stark changed review comment from: At least 10 families reported.

175-176insG is known as the Saudi Arabian variant, while 76C>T is known as the Native American variant.

Features include:
Conotruncal heart defects, Abnormalities of the internal carotid artery and other cerebral arteries, Abnormal skull base

Biallelic variants in this gene cause a syndrome affecting hindbrain development, with BSAS and ABDS allelic disorders.; to: Biallelic variants in this gene cause a syndrome affecting hindbrain development, with BSAS and ABDS allelic disorders.

At least 10 families reported.

175-176insG is known as the Saudi Arabian variant, while 76C>T is known as the Native American variant.

Features include:
Conotruncal heart defects, Abnormalities of the internal carotid artery and other cerebral arteries, Abnormal skull base
Mendeliome v0.13699 HOXA1 Zornitza Stark reviewed gene: HOXA1: Rating: GREEN; Mode of pathogenicity: None; Publications: 16155570, 18412118, 32864817; Phenotypes: Athabaskan brainstem dysgenesis syndrome MIM#601536, Bosley-Salih-Alorainy syndrome MIM#601536; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Motor Neurone Disease v0.137 HNRNPA1 Zornitza Stark Marked gene: HNRNPA1 as ready
Motor Neurone Disease v0.137 HNRNPA1 Zornitza Stark Gene: hnrnpa1 has been classified as Green List (High Evidence).
Motor Neurone Disease v0.137 HNRNPA1 Zornitza Stark Phenotypes for gene: HNRNPA1 were changed from to Amyotrophic lateral sclerosis 20 MIM#615426
Motor Neurone Disease v0.136 HNRNPA1 Zornitza Stark Publications for gene: HNRNPA1 were set to
Motor Neurone Disease v0.135 HNRNPA1 Zornitza Stark Mode of inheritance for gene: HNRNPA1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Motor Neurone Disease v0.134 HNRNPA1 Zornitza Stark reviewed gene: HNRNPA1: Rating: GREEN; Mode of pathogenicity: None; Publications: 23455423, 34291734; Phenotypes: Amyotrophic lateral sclerosis 20 MIM#615426; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13699 HNRNPA1 Zornitza Stark Marked gene: HNRNPA1 as ready
Mendeliome v0.13699 HNRNPA1 Zornitza Stark Gene: hnrnpa1 has been classified as Green List (High Evidence).
Mendeliome v0.13699 HNRNPA1 Zornitza Stark Phenotypes for gene: HNRNPA1 were changed from to Amyotrophic lateral sclerosis 20 MIM#615426
Mendeliome v0.13698 HNRNPA1 Zornitza Stark Publications for gene: HNRNPA1 were set to
Mendeliome v0.13697 HNRNPA1 Zornitza Stark Mode of inheritance for gene: HNRNPA1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13696 HNRNPA1 Zornitza Stark reviewed gene: HNRNPA1: Rating: GREEN; Mode of pathogenicity: None; Publications: 23455423, 34291734; Phenotypes: Amyotrophic lateral sclerosis 20 MIM#615426; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13696 HNF4A Zornitza Stark Marked gene: HNF4A as ready
Mendeliome v0.13696 HNF4A Zornitza Stark Gene: hnf4a has been classified as Green List (High Evidence).
Mendeliome v0.13696 HNF4A Zornitza Stark Phenotypes for gene: HNF4A were changed from to Fanconi renotubular syndrome 4, with maturity-onset diabetes of the young, OMIM #616026; MODY, type I, OMIM # 125850
Mendeliome v0.13695 HNF4A Zornitza Stark Publications for gene: HNF4A were set to
Mendeliome v0.13694 HNF4A Zornitza Stark Mode of inheritance for gene: HNF4A was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13693 HNF4A Zornitza Stark reviewed gene: HNF4A: Rating: GREEN; Mode of pathogenicity: None; Publications: 31875549, 24285859, 22802087, 30005691, 28458902; Phenotypes: Fanconi renotubular syndrome 4, with maturity-onset diabetes of the young, OMIM #616026, MODY, type I, OMIM # 125850; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13693 HNF1A Zornitza Stark Marked gene: HNF1A as ready
Mendeliome v0.13693 HNF1A Zornitza Stark Gene: hnf1a has been classified as Green List (High Evidence).
Mendeliome v0.13693 HNF1A Zornitza Stark Phenotypes for gene: HNF1A were changed from to Diabetes mellitus, insulin-dependent, 20, MIM# 612520; MODY, type III , MIM#600496
Mendeliome v0.13692 HNF1A Zornitza Stark Publications for gene: HNF1A were set to
Mendeliome v0.13691 HNF1A Zornitza Stark Mode of inheritance for gene: HNF1A was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13690 HNF1A Zornitza Stark reviewed gene: HNF1A: Rating: GREEN; Mode of pathogenicity: None; Publications: 9097962, 9112026; Phenotypes: Diabetes mellitus, insulin-dependent, 20, MIM# 612520, MODY, type III , MIM#600496; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Syndromic Retinopathy v0.194 HMX1 Zornitza Stark Marked gene: HMX1 as ready
Syndromic Retinopathy v0.194 HMX1 Zornitza Stark Gene: hmx1 has been classified as Green List (High Evidence).
Syndromic Retinopathy v0.194 HMX1 Zornitza Stark Phenotypes for gene: HMX1 were changed from to Oculoauricular syndrome, MIM#612109
Syndromic Retinopathy v0.193 HMX1 Zornitza Stark Publications for gene: HMX1 were set to
Syndromic Retinopathy v0.192 HMX1 Zornitza Stark reviewed gene: HMX1: Rating: GREEN; Mode of pathogenicity: None; Publications: 18423520, 25574057, 33465110, 32552830, 31691317; Phenotypes: Oculoauricular syndrome, MIM#612109; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13690 HMX1 Zornitza Stark Tag SV/CNV tag was added to gene: HMX1.
Mendeliome v0.13690 HMX1 Zornitza Stark Marked gene: HMX1 as ready
Mendeliome v0.13690 HMX1 Zornitza Stark Gene: hmx1 has been classified as Green List (High Evidence).
Mendeliome v0.13690 HMX1 Zornitza Stark Phenotypes for gene: HMX1 were changed from to Oculoauricular syndrome, MIM#612109
Mendeliome v0.13689 HMX1 Zornitza Stark Publications for gene: HMX1 were set to
Mendeliome v0.13688 HMX1 Zornitza Stark Mode of inheritance for gene: HMX1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13687 HMX1 Zornitza Stark changed review comment from: Oculoauricular syndrome (OCACS) is characterized by complex ocular anomalies, including congenital cataract, anterior segment dysgenesis, iris coloboma, and early-onset retinal dystrophy, and dysplastic ears with abnormal external ear cartilage.

At least two families and two animal models. Also evidence that duplication of long-range enhancer causes microbial.; to: Oculoauricular syndrome (OCACS) is characterized by complex ocular anomalies, including congenital cataract, anterior segment dysgenesis, iris coloboma, and early-onset retinal dystrophy, and dysplastic ears with abnormal external ear cartilage.

At least two families and two animal models. Also evidence that duplication of long-range enhancer causes microtia.
Mendeliome v0.13687 HMX1 Zornitza Stark reviewed gene: HMX1: Rating: GREEN; Mode of pathogenicity: None; Publications: 18423520, 25574057, 33465110, 32552830, 31691317; Phenotypes: Oculoauricular syndrome, MIM#612109; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13687 COL9A1 Ain Roesley Marked gene: COL9A1 as ready
Mendeliome v0.13687 COL9A1 Ain Roesley Gene: col9a1 has been classified as Green List (High Evidence).
Mendeliome v0.13687 COL9A1 Ain Roesley Phenotypes for gene: COL9A1 were changed from to Stickler syndrome, type IV, MIM# 614134
Mendeliome v0.13686 COL9A1 Ain Roesley Publications for gene: COL9A1 were set to
Mendeliome v0.13686 COL9A1 Ain Roesley Mode of inheritance for gene: COL9A1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13685 COL9A1 Ain Roesley reviewed gene: COL9A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 16909383, 21421862, 31090205; Phenotypes: Stickler syndrome, type IV, MIM# 614134; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Multiple epiphyseal dysplasia and pseudoachondroplasia v0.7 COL9A1 Ain Roesley Marked gene: COL9A1 as ready
Multiple epiphyseal dysplasia and pseudoachondroplasia v0.7 COL9A1 Ain Roesley Gene: col9a1 has been classified as Red List (Low Evidence).
Multiple epiphyseal dysplasia and pseudoachondroplasia v0.7 COL9A1 Ain Roesley Phenotypes for gene: COL9A1 were changed from Stickler syndrome, type IV 614134; Epiphyseal dysplasia, multiple, 6 614135 to Epiphyseal dysplasia, multiple, 6 614135
Multiple epiphyseal dysplasia and pseudoachondroplasia v0.6 COL9A1 Ain Roesley Publications for gene: COL9A1 were set to
Multiple epiphyseal dysplasia and pseudoachondroplasia v0.5 COL9A1 Ain Roesley Classified gene: COL9A1 as Red List (low evidence)
Multiple epiphyseal dysplasia and pseudoachondroplasia v0.5 COL9A1 Ain Roesley Added comment: Comment on list classification: Too many hets in gnomAD for the variants reported thus far
Multiple epiphyseal dysplasia and pseudoachondroplasia v0.5 COL9A1 Ain Roesley Gene: col9a1 has been classified as Red List (Low Evidence).
Mendeliome v0.13685 CORIN Ain Roesley Phenotypes for gene: CORIN were changed from to Preeclampsia/eclampsia 5 MIM#614595
Mendeliome v0.13685 CORIN Ain Roesley Publications for gene: CORIN were set to
Mendeliome v0.13684 CORIN Ain Roesley Mode of inheritance for gene: CORIN was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13684 CORIN Ain Roesley Classified gene: CORIN as Red List (low evidence)
Mendeliome v0.13684 CORIN Ain Roesley Added comment: Comment on list classification: pre-eclampsia is typically not monogenic
Mendeliome v0.13684 CORIN Ain Roesley Gene: corin has been classified as Red List (Low Evidence).
Mendeliome v0.13683 CORIN Ain Roesley edited their review of gene: CORIN: Changed rating: RED
Mendeliome v0.13683 CORIN Ain Roesley reviewed gene: CORIN: Rating: AMBER; Mode of pathogenicity: None; Publications: 22437503; Phenotypes: Preeclampsia/eclampsia 5 MIM#614595; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Differences of Sex Development v0.251 DUSP6 Krithika Murali reviewed gene: DUSP6: Rating: RED; Mode of pathogenicity: None; Publications: 23643382, 32389901; Phenotypes: Hypogonadotropic hypogonadism 19 with or without anosmia - MIM#615269; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Callosome v0.435 DUSP6 Krithika Murali reviewed gene: DUSP6: Rating: RED; Mode of pathogenicity: None; Publications: 32389901, 23643382; Phenotypes: Hypogonadotropic hypogonadism 19 with or without anosmia - MIM#615269; Mode of inheritance: None
Mendeliome v0.13683 DUSP6 Krithika Murali changed review comment from: PMID: 23643382 Miraoui et al 2013 - - candidate gene study for genes in the FGFR1 pathway that may be associated with CHH, either as causative genes or disease modifiers. A cohort of 386 CHH individuals and 155 unaffected controls of European descent. A number of affected individuals included in this cohort already had known causative variants in CHH-associated genes. The coding exons and proximal introns (≥15 bp from splice sites) of FGF17, FGF18, IL17RD, DUSP6, SPRY2, SPRY4, and FLRT3 were amplified by PCR and determined by direct sequencing.

Summary of DUSP6 variants identified in this study
c.229 T>A p.(Phe77Ile) - absent gnomAD v2 and v3
c.545C>T p.(Ser182Phe) - 203 hets gnomad v2, 137 hets and 1 hom - v3 - identified in conjunction with FGFR1 variant in this individual
c.566A>G p.Asn189Ser - v2 57 hets, v3 29 hets (another individual identified with this variant and an SPRY4 variant)
c.1037C>T p.Thr346Met - 81 hets v2, 27 hets and 1 hom v3 (identified in conjunction with SPRY4 variant

No segregation information provided.

PMID: 23643382 - Dusp6 null mouse model reportedly has craniofacial defects and hearing defects, but no mention of hypogonadotropic hypogonadism. In 5 unrelated individuals with congenital hypogonadotropic hypogonadism 4 heterozygous missense were identified. In 3 of the probands, the DUSP6 mutation was accompanied by a heterozygous missense mutation in another HH-associated gene. 3 of the 4 variants have subpopulation allele frequencies in gnomAD v2.1 that are higher than expected for a dominant condition: p.Thr346Met (AJ AF 0.002797), p.Ser182Phe (NFE AF 0.001396), p.Asn189Ser (NFE AF 0.0003641). No functional assays were conducted.

PMID: 32389901 - 6 unrelated male Chinese Kallman syndrome cases with 4 DUSP6 missense variants. 2 of 4 variants have East Asian allele frequencies in gnomAD v2.1 that are higher than expected for a dominant condition: p.Pro188Leu (EAS AF 0.001203), p.Arg83Gln (EAS AF 0.001129). No functional assays conducted.; to: PMID: 23643382 Miraoui et al 2013 - - candidate gene study for genes in the FGFR1 pathway that may be associated with CHH, either as causative genes or disease modifiers. A cohort of 386 CHH individuals and 155 unaffected controls of European descent. A number of affected individuals included in this cohort already had known causative variants in CHH-associated genes. The coding exons and proximal introns (≥15 bp from splice sites) of FGF17, FGF18, IL17RD, DUSP6, SPRY2, SPRY4, and FLRT3 were amplified by PCR and determined by direct sequencing.

Summary of DUSP6 variants identified in this study
c.229 T>A p.(Phe77Ile) - absent gnomAD v2 and v3
c.545C>T p.(Ser182Phe) - 203 hets gnomad v2, 137 hets and 1 hom - v3 - identified in conjunction with FGFR1 variant in this individual
c.566A>G p.Asn189Ser - v2 57 hets, v3 29 hets (another individual identified with this variant and an SPRY4 variant)
c.1037C>T p.Thr346Met - 81 hets v2, 27 hets and 1 hom v3 (identified in conjunction with SPRY4 variant

No segregation information provided. Dusp6 null mouse model reportedly has craniofacial defects and hearing defects, but no mention of hypogonadotropic hypogonadism.

PMID: 32389901 - 6 unrelated male Chinese Kallman syndrome cases with 4 DUSP6 missense variants. 2 of 4 variants have East Asian allele frequencies in gnomAD v2.1 that are higher than expected for a dominant condition: p.Pro188Leu (EAS AF 0.001203), p.Arg83Gln (EAS AF 0.001129). No functional assays conducted.
Mendeliome v0.13683 DUSP6 Krithika Murali changed review comment from: 1 study cited by OMIM (Miraoui et al 2013) - heterozygous variants in 5 unrelated individuals with congenital hypogonadotrophic hypogonadism (CHH). 4/5 variants highly prevalent in healthy population and/or in conjunction with variants in other genes either known to be associated with CHH or possibly associated. No additional studies published since this paper.

PMID: 23643382 Miraoui et al 2013 - - candidate gene study for genes in the FGFR1 pathway that may be associated with CHH, either as causative genes or disease modifiers. A cohort of 386 CHH individuals and 155 unaffected controls of European descent. A number of affected individuals included in this cohort already had known causative variants in CHH-associated genes. The coding exons and proximal introns (≥15 bp from splice sites) of FGF17, FGF18, IL17RD, DUSP6, SPRY2, SPRY4, and FLRT3 were amplified by PCR and determined by direct sequencing.

Summary of DUSP6 variants identified in this study
c.229 T>A p.(Phe77Ile) - absent gnomAD v2 and v3
c.545C>T p.(Ser182Phe) - 203 hets gnomad v2, 137 hets and 1 hom - v3 - identified in conjunction with FGFR1 variant in this individual
c.566A>G p.Asn189Ser - v2 57 hets, v3 29 hets (another individual identified with this variant and an SPRY4 variant)
c.1037C>T p.Thr346Met - 81 hets v2, 27 hets and 1 hom v3 (identified in conjunction with SPRY4 variant

No segregation information provided.; to: PMID: 23643382 Miraoui et al 2013 - - candidate gene study for genes in the FGFR1 pathway that may be associated with CHH, either as causative genes or disease modifiers. A cohort of 386 CHH individuals and 155 unaffected controls of European descent. A number of affected individuals included in this cohort already had known causative variants in CHH-associated genes. The coding exons and proximal introns (≥15 bp from splice sites) of FGF17, FGF18, IL17RD, DUSP6, SPRY2, SPRY4, and FLRT3 were amplified by PCR and determined by direct sequencing.

Summary of DUSP6 variants identified in this study
c.229 T>A p.(Phe77Ile) - absent gnomAD v2 and v3
c.545C>T p.(Ser182Phe) - 203 hets gnomad v2, 137 hets and 1 hom - v3 - identified in conjunction with FGFR1 variant in this individual
c.566A>G p.Asn189Ser - v2 57 hets, v3 29 hets (another individual identified with this variant and an SPRY4 variant)
c.1037C>T p.Thr346Met - 81 hets v2, 27 hets and 1 hom v3 (identified in conjunction with SPRY4 variant

No segregation information provided.

PMID: 23643382 - Dusp6 null mouse model reportedly has craniofacial defects and hearing defects, but no mention of hypogonadotropic hypogonadism. In 5 unrelated individuals with congenital hypogonadotropic hypogonadism 4 heterozygous missense were identified. In 3 of the probands, the DUSP6 mutation was accompanied by a heterozygous missense mutation in another HH-associated gene. 3 of the 4 variants have subpopulation allele frequencies in gnomAD v2.1 that are higher than expected for a dominant condition: p.Thr346Met (AJ AF 0.002797), p.Ser182Phe (NFE AF 0.001396), p.Asn189Ser (NFE AF 0.0003641). No functional assays were conducted.

PMID: 32389901 - 6 unrelated male Chinese Kallman syndrome cases with 4 DUSP6 missense variants. 2 of 4 variants have East Asian allele frequencies in gnomAD v2.1 that are higher than expected for a dominant condition: p.Pro188Leu (EAS AF 0.001203), p.Arg83Gln (EAS AF 0.001129). No functional assays conducted.
Mendeliome v0.13683 COQ9 Ain Roesley Marked gene: COQ9 as ready
Mendeliome v0.13683 COQ9 Ain Roesley Gene: coq9 has been classified as Green List (High Evidence).
Mendeliome v0.13683 COQ9 Ain Roesley Phenotypes for gene: COQ9 were changed from to Coenzyme Q10 deficiency, primary, 5, MIM#614654
Mendeliome v0.13682 DUSP6 Krithika Murali reviewed gene: DUSP6: Rating: RED; Mode of pathogenicity: None; Publications: 23643382; Phenotypes: Hypogonadotropic hypogonadism 19 with or without anosmia - MIM#615269; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13682 COQ9 Ain Roesley Publications for gene: COQ9 were set to
Mendeliome v0.13682 COQ9 Ain Roesley Mode of inheritance for gene: COQ9 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13681 COQ9 Ain Roesley reviewed gene: COQ9: Rating: GREEN; Mode of pathogenicity: None; Publications: 19375058, 26081641, 23255162, 31821167; Phenotypes: Coenzyme Q10 deficiency, primary, 5, MIM#614654; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13681 COQ8B Ain Roesley Marked gene: COQ8B as ready
Mendeliome v0.13681 COQ8B Ain Roesley Gene: coq8b has been classified as Green List (High Evidence).
Mendeliome v0.13681 COQ8B Ain Roesley Phenotypes for gene: COQ8B were changed from to Nephrotic syndrome, type 9 MIM#615573
Mendeliome v0.13681 COQ8B Ain Roesley Publications for gene: COQ8B were set to
Mendeliome v0.13681 COQ8B Ain Roesley Mode of inheritance for gene: COQ8B was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13680 COQ8B Ain Roesley reviewed gene: COQ8B: Rating: GREEN; Mode of pathogenicity: None; Publications: 24270420; Phenotypes: Nephrotic syndrome, type 9 MIM#615573; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13680 COQ8A Ain Roesley Marked gene: COQ8A as ready
Mendeliome v0.13680 COQ8A Ain Roesley Gene: coq8a has been classified as Green List (High Evidence).
Mendeliome v0.13680 COQ8A Ain Roesley Phenotypes for gene: COQ8A were changed from to Coenzyme Q10 deficiency, primary, 4 MIM#612016
Mendeliome v0.13680 COQ8A Ain Roesley Publications for gene: COQ8A were set to
Mendeliome v0.13680 COQ8A Ain Roesley Mode of inheritance for gene: COQ8A was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13679 COQ8A Ain Roesley reviewed gene: COQ8A: Rating: GREEN; Mode of pathogenicity: None; Publications: 32337771; Phenotypes: Coenzyme Q10 deficiency, primary, 4 MIM#612016; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13679 COQ7 Ain Roesley Marked gene: COQ7 as ready
Mendeliome v0.13679 COQ7 Ain Roesley Gene: coq7 has been classified as Green List (High Evidence).
Mendeliome v0.13679 COQ7 Ain Roesley Phenotypes for gene: COQ7 were changed from to Coenzyme Q10 deficiency, primary, 8 MIM#616733
Mendeliome v0.13679 COQ7 Ain Roesley Publications for gene: COQ7 were set to
Mendeliome v0.13679 COQ7 Ain Roesley Mode of inheritance for gene: COQ7 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13678 COQ7 Ain Roesley reviewed gene: COQ7: Rating: GREEN; Mode of pathogenicity: None; Publications: 26084283, 31240163, 33215859, 28409910; Phenotypes: Coenzyme Q10 deficiency, primary, 8 MIM#616733; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13678 COQ6 Ain Roesley Marked gene: COQ6 as ready
Mendeliome v0.13678 COQ6 Ain Roesley Gene: coq6 has been classified as Green List (High Evidence).
Mendeliome v0.13678 COQ6 Ain Roesley Publications for gene: COQ6 were set to
Mendeliome v0.13678 COQ6 Ain Roesley Phenotypes for gene: COQ6 were changed from to Coenzyme Q10 deficiency, primary, 6 MIM#614650
Mendeliome v0.13678 COQ6 Ain Roesley Mode of inheritance for gene: COQ6 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13677 COQ6 Ain Roesley reviewed gene: COQ6: Rating: GREEN; Mode of pathogenicity: None; Publications: 28125198; Phenotypes: Coenzyme Q10 deficiency, primary, 6 MIM#614650; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13677 COMP Ain Roesley Publications for gene: COMP were set to
Mendeliome v0.13676 COMP Ain Roesley Phenotypes for gene: COMP were changed from to Epiphyseal dysplasia, multiple, 1 MIM#132400; Pseudoachondroplasia MIM#177170
Mendeliome v0.13676 COMP Ain Roesley Mode of inheritance for gene: COMP was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13675 COMP Ain Roesley Tag STR tag was added to gene: COMP.
Mendeliome v0.13675 COMP Ain Roesley reviewed gene: COMP: Rating: GREEN; Mode of pathogenicity: None; Publications: 20301302, 20301660; Phenotypes: Epiphyseal dysplasia, multiple, 1 MIM#132400, Pseudoachondroplasia MIM#177170; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13675 COL9A2 Ain Roesley Marked gene: COL9A2 as ready
Mendeliome v0.13675 COL9A2 Ain Roesley Gene: col9a2 has been classified as Green List (High Evidence).
Mendeliome v0.13675 COL9A2 Ain Roesley Publications for gene: COL9A2 were set to
Mendeliome v0.13675 COL9A2 Ain Roesley Phenotypes for gene: COL9A2 were changed from to Stickler syndrome, type V MIM#614284' Epiphyseal dysplasia, multiple, 2 MIM#600204
Mendeliome v0.13675 COL9A2 Ain Roesley Mode of inheritance for gene: COL9A2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13674 COL9A2 Ain Roesley reviewed gene: COL9A2: Rating: GREEN; Mode of pathogenicity: None; Publications: 21671392, 31090205, 33356723, 10364514, 15633184, 20358595, 8528240; Phenotypes: Stickler syndrome, type V MIM#614284' Epiphyseal dysplasia, multiple, 2 MIM#600204; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Monogenic Diabetes v0.23 DYRK1B Krithika Murali reviewed gene: DYRK1B: Rating: AMBER; Mode of pathogenicity: None; Publications: 34193236, 34786696, 24827035, 28743892; Phenotypes: Abdominal obesity-metabolic syndrome 3 - MIM#615812; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13674 DYRK1B Krithika Murali reviewed gene: DYRK1B: Rating: AMBER; Mode of pathogenicity: None; Publications: 34193236, 34786696, 24827035, 28743892; Phenotypes: Abdominal obesity-metabolic syndrome 3 - MIM#615812; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13674 COL6A3 Ain Roesley Marked gene: COL6A3 as ready
Mendeliome v0.13674 COL6A3 Ain Roesley Gene: col6a3 has been classified as Green List (High Evidence).
Mendeliome v0.13674 COL6A3 Ain Roesley Publications for gene: COL6A3 were set to
Mendeliome v0.13674 COL6A3 Ain Roesley Phenotypes for gene: COL6A3 were changed from to Bethlem myopathy 1 MIM#158810; Dystonia 27 MIM#616411; Ullrich congenital muscular dystrophy 1 MIM#254090
Mendeliome v0.13674 COL6A3 Ain Roesley Mode of inheritance for gene: COL6A3 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13673 COL6A3 Ain Roesley edited their review of gene: COL6A3: Changed publications: 20301676, 26004199, 32037012, 26872670, 32037012
Mendeliome v0.13673 COL6A2 Ain Roesley edited their review of gene: COL6A2: Changed publications: 20301676
Mendeliome v0.13673 COL6A2 Ain Roesley edited their review of gene: COL6A2: Changed publications: 20301676, 26004199, 32037012, 26872670, 32037012
Mendeliome v0.13673 COL6A3 Ain Roesley reviewed gene: COL6A3: Rating: GREEN; Mode of pathogenicity: None; Publications: 20301676; Phenotypes: Bethlem myopathy 1 MIM#158810, Dystonia 27 MIM#616411, Ullrich congenital muscular dystrophy 1 MIM#254090; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13673 COL6A2 Ain Roesley changed review comment from: GeneReviews PMID:20301676

AD variants typically occur near the N terminal of the triple helical (TH) domain, which contains a critical region of 10 to 15 Gly-X-Y triplets; in-frame exon-skipping variants and glycine substitutions in this region tend to result in more severe phenotypes

AR variants are usually nonsense or fs, or biallelic variants located near the C-terminal end of the TH domain, where they will be excluded from assembly

COL621 accounts for 44-46% of Collagen VI-Related Dystrophies cases; to: GeneReviews PMID:20301676

AD variants typically occur near the N terminal of the triple helical (TH) domain, which contains a critical region of 10 to 15 Gly-X-Y triplets; in-frame exon-skipping variants and glycine substitutions in this region tend to result in more severe phenotypes

AR variants are usually nonsense or fs, or biallelic variants located near the C-terminal end of the TH domain, where they will be excluded from assembly

COL6A2 accounts for 44-46% of Collagen VI-Related Dystrophies cases
Mendeliome v0.13673 COL6A2 Ain Roesley Marked gene: COL6A2 as ready
Mendeliome v0.13673 COL6A2 Ain Roesley Gene: col6a2 has been classified as Green List (High Evidence).
Mendeliome v0.13673 COL6A2 Ain Roesley Phenotypes for gene: COL6A2 were changed from to Bethlem myopathy 1 MIM#158810; Ullrich congenital muscular dystrophy 1 MIM#254090
Mendeliome v0.13672 COL6A2 Ain Roesley Publications for gene: COL6A2 were set to
Mendeliome v0.13672 COL6A2 Ain Roesley Mode of inheritance for gene: COL6A2 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13671 COL6A2 Ain Roesley reviewed gene: COL6A2: Rating: GREEN; Mode of pathogenicity: None; Publications: 20301676; Phenotypes: Bethlem myopathy 1 MIM#158810, Ullrich congenital muscular dystrophy 1 MIM#254090; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13671 COL6A1 Ain Roesley changed review comment from: Well established association

Genereviews PMID:20301676

AD variants typically occur near the N terminal of the triple helical (TH) domain, which contains a critical region of 10 to 15 Gly-X-Y triplets; in-frame exon-skipping variants and glycine substitutions in this region tend to result in more severe phenotypes

AR variants are usually nonsense or fs, or biallelic variants located near the C-terminal end of the TH domain, where they will be excluded from assembly; to: Well established association

Genereviews PMID:20301676

AD variants typically occur near the N terminal of the triple helical (TH) domain, which contains a critical region of 10 to 15 Gly-X-Y triplets; in-frame exon-skipping variants and glycine substitutions in this region tend to result in more severe phenotypes

AR variants are usually nonsense or fs, or biallelic variants located near the C-terminal end of the TH domain, where they will be excluded from assembly

COL6A1 accounts for 35-38% of Collagen VI-Related Dystrophies cases
Mendeliome v0.13671 COL6A1 Ain Roesley Marked gene: COL6A1 as ready
Mendeliome v0.13671 COL6A1 Ain Roesley Gene: col6a1 has been classified as Green List (High Evidence).
Mendeliome v0.13671 COL6A1 Ain Roesley Phenotypes for gene: COL6A1 were changed from to Bethlem myopathy MIM#158810; Ullrich congenital muscular dystrophy MIM#254090
Mendeliome v0.13671 COL6A1 Ain Roesley Publications for gene: COL6A1 were set to
Mendeliome v0.13670 COL6A1 Ain Roesley edited their review of gene: COL6A1: Changed publications: 20301676, 25535305, 15955946, 23738969, 29277723, 24443028; Changed mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13670 COL6A1 Ain Roesley Mode of inheritance for gene: COL6A1 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13669 COL6A1 Ain Roesley changed review comment from: Well established association

Both loss-of-function and dominant negative mechanism has been reported for this gene. Mutations result in a spectrum of disease, ranging from the milder Bethlem myopathy (monoallelic) to the more severe Ullrich congenital muscular dystrophy (biallelic) (PMID: 29277723; 24443028).
Sources: Literature; to: Well established association

Genereviews PMID:20301676

AD variants typically occur near the N terminal of the triple helical (TH) domain, which contains a critical region of 10 to 15 Gly-X-Y triplets; in-frame exon-skipping variants and glycine substitutions in this region tend to result in more severe phenotypes

AR variants are usually nonsense or fs, or biallelic variants located near the C-terminal end of the TH domain, where they will be excluded from assembly
Mendeliome v0.13669 COL6A1 Ain Roesley reviewed gene: COL6A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 25535305, 15955946, 23738969, 29277723, 24443028; Phenotypes: Bethlem myopathy MIM#158810, Ullrich congenital muscular dystrophy MIM#254090; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13669 COL5A2 Ain Roesley Marked gene: COL5A2 as ready
Mendeliome v0.13669 COL5A2 Ain Roesley Gene: col5a2 has been classified as Green List (High Evidence).
Mendeliome v0.13669 COL5A2 Ain Roesley Publications for gene: COL5A2 were set to
Mendeliome v0.13670 COL5A2 Ain Roesley Phenotypes for gene: COL5A2 were changed from to Ehlers-Danlos syndrome, classic type, 2 MIM#130010
Mendeliome v0.13669 COL5A2 Ain Roesley Mode of inheritance for gene: COL5A2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13668 COL5A2 Ain Roesley reviewed gene: COL5A2: Rating: GREEN; Mode of pathogenicity: None; Publications: 20301422; Phenotypes: Ehlers-Danlos syndrome, classic type, 2 MIM#130010; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13668 COL4A4 Ain Roesley Marked gene: COL4A4 as ready
Mendeliome v0.13668 COL4A4 Ain Roesley Gene: col4a4 has been classified as Green List (High Evidence).
Mendeliome v0.13668 COL4A4 Ain Roesley Phenotypes for gene: COL4A4 were changed from to Alport syndrome 2, autosomal recessive MIM#203780; Hematuria, familial benign MIM#141200
Mendeliome v0.13667 COL4A4 Ain Roesley Publications for gene: COL4A4 were set to
Mendeliome v0.13667 COL4A4 Ain Roesley Mode of inheritance for gene: COL4A4 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13666 COL4A4 Ain Roesley reviewed gene: COL4A4: Rating: GREEN; Mode of pathogenicity: None; Publications: 20301386; Phenotypes: Alport syndrome 2, autosomal recessive MIM#203780, Hematuria, familial benign MIM#141200; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13666 COL4A3 Ain Roesley Marked gene: COL4A3 as ready
Mendeliome v0.13666 COL4A3 Ain Roesley Gene: col4a3 has been classified as Green List (High Evidence).
Mendeliome v0.13666 COL4A3 Ain Roesley Phenotypes for gene: COL4A3 were changed from to Alport syndrome 2, autosomal recessive, MIM# 203780; Alport syndrome 3, autosomal dominant, MIM# 104200
Mendeliome v0.13666 COL4A3 Ain Roesley Mode of inheritance for gene: COL4A3 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13665 COL4A3 Ain Roesley reviewed gene: COL4A3: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Alport syndrome 2, autosomal recessive, MIM# 203780, Alport syndrome 3, autosomal dominant, MIM# 104200; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13665 COL4A2 Ain Roesley Marked gene: COL4A2 as ready
Mendeliome v0.13665 COL4A2 Ain Roesley Gene: col4a2 has been classified as Green List (High Evidence).
Mendeliome v0.13665 COL4A2 Ain Roesley Publications for gene: COL4A2 were set to
Mendeliome v0.13665 COL4A2 Ain Roesley Phenotypes for gene: COL4A2 were changed from to Cerebral Palsy MONDO#0006497, COL4A2-related; Brain small vessel disease 2 MIM# 614483
Mendeliome v0.13665 COL4A2 Ain Roesley Mode of inheritance for gene: COL4A2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13664 COL4A2 Ain Roesley reviewed gene: COL4A2: Rating: GREEN; Mode of pathogenicity: None; Publications: 33528536, 33912663, 22209246, 30315939, 22333902; Phenotypes: Cerebral Palsy MONDO#0006497, COL4A2-related, Brain small vessel disease 2 MIM# 614483; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13664 COL4A1 Ain Roesley Marked gene: COL4A1 as ready
Mendeliome v0.13664 COL4A1 Ain Roesley Gene: col4a1 has been classified as Green List (High Evidence).
Mendeliome v0.13664 COL4A1 Ain Roesley Phenotypes for gene: COL4A1 were changed from to Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps MIM#611773; Brain small vessel disease with or without ocular anomalies MIM#175780; Microangiopathy and leukoencephalopathy, pontine, autosomal dominant MIM#618564
Mendeliome v0.13663 COL4A1 Ain Roesley Publications for gene: COL4A1 were set to
Mendeliome v0.13663 COL4A1 Ain Roesley Mode of inheritance for gene: COL4A1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13662 COL4A1 Ain Roesley reviewed gene: COL4A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 24628545, 25719457, 21625620, 23225343, 23065703, 20818663, 20301768; Phenotypes: Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps MIM#611773, Brain small vessel disease with or without ocular anomalies MIM#175780, Microangiopathy and leukoencephalopathy, pontine, autosomal dominant MIM#618564; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13662 HMOX1 Zornitza Stark Marked gene: HMOX1 as ready
Mendeliome v0.13662 HMOX1 Zornitza Stark Gene: hmox1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13662 HMOX1 Zornitza Stark Phenotypes for gene: HMOX1 were changed from to Heme oxygenase-1 deficiency, MIM# 614034; Asplenia
Mendeliome v0.13661 HMOX1 Zornitza Stark Publications for gene: HMOX1 were set to
Mendeliome v0.13660 HMOX1 Zornitza Stark Mode of inheritance for gene: HMOX1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13659 HMOX1 Zornitza Stark Classified gene: HMOX1 as Amber List (moderate evidence)
Mendeliome v0.13659 HMOX1 Zornitza Stark Gene: hmox1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13658 COL27A1 Ain Roesley edited their review of gene: COL27A1: Changed phenotypes: Steel syndrome MIM #615155
Mendeliome v0.13658 COL27A1 Ain Roesley Marked gene: COL27A1 as ready
Mendeliome v0.13658 COL27A1 Ain Roesley Gene: col27a1 has been classified as Green List (High Evidence).
Mendeliome v0.13658 COL27A1 Ain Roesley Phenotypes for gene: COL27A1 were changed from to Steel syndrome, MIM #615155
Mendeliome v0.13657 COL27A1 Ain Roesley Publications for gene: COL27A1 were set to
Mendeliome v0.13657 COL27A1 Ain Roesley Mode of inheritance for gene: COL27A1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13656 COL27A1 Ain Roesley reviewed gene: COL27A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 24986830, 28276056, 28322503, 32360765, 33963180; Phenotypes: Steel syndrome, OMIM #615155; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13656 COL1A2 Ain Roesley edited their review of gene: COL1A2: Changed phenotypes: Combined osteogenesis imperfecta and Ehlers-Danlos syndrome 2, MIM# 619120, Ehlers-Danlos syndrome, arthrochalasia type, 2, MIM# 617821, Ehlers-Danlos syndrome, cardiac valvular type, MIM# 225320, Osteogenesis imperfecta, type II, MIM# 166210, Osteogenesis imperfecta, type III, MIM# 259420, Osteogenesis imperfecta, type IV, MIM# 166220
Mendeliome v0.13656 COL1A2 Ain Roesley Marked gene: COL1A2 as ready
Mendeliome v0.13656 COL1A2 Ain Roesley Gene: col1a2 has been classified as Green List (High Evidence).
Mendeliome v0.13656 COL1A2 Ain Roesley Phenotypes for gene: COL1A2 were changed from to Combined osteogenesis imperfecta and Ehlers-Danlos syndrome 2, MIM# 619120; Ehlers-Danlos syndrome, arthrochalasia type, 2, MIM# 617821; Ehlers-Danlos syndrome, cardiac valvular type, MIM# 225320; Osteogenesis imperfecta, type II, MIM# 166210; Osteogenesis imperfecta, type III, MIM# 259420; Osteogenesis imperfecta, type IV, MIM# 166220
Mendeliome v0.13655 COL1A2 Ain Roesley Publications for gene: COL1A2 were set to
Mendeliome v0.13654 COL1A2 Ain Roesley Mode of inheritance for gene: COL1A2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13653 COL1A2 Ain Roesley reviewed gene: COL1A2: Rating: GREEN; Mode of pathogenicity: None; Publications: 28306229, 32091183, 2993307, 30821104; Phenotypes: Ehlers-Danlos syndrome, arthrochalasia type, 2 MIM#617821, Ehlers-Danlos syndrome, cardiac valvular type MIM#225320; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13653 COL1A1 Ain Roesley changed review comment from: COL1A1 is mostly associated with osteogenesis imperfecta however, substitutions of arginine by cysteine in the triple helical domain) have been reported in individuals w/classic EDS & aneurysm & dissection of large vessels (PMID: 20301422;20301667)

The mild forms are usually caused by haploinsufficiency and result in a reduced amount of normal type I collagen, the severe and lethal forms result from dominant negative variants which produce structural defects in the collagen molecule (PMID:12362985).; to: COL1A1 is mostly associated with osteogenesis imperfecta however, substitutions of arginine by cysteine in the triple helical domain) have been reported in individuals w/classic EDS & aneurysm & dissection of large vessels (PMID: 20301422;20301667)

For skeletal phenotypes:
The mild forms are usually caused by haploinsufficiency and result in a reduced amount of normal type I collagen, the severe and lethal forms result from dominant negative variants which produce structural defects in the collagen molecule (PMID:12362985).
Mendeliome v0.13653 COL1A1 Ain Roesley changed review comment from: COL1A1 is mostly associated with osteogenesis imperfecta however, substitutions of arginine by cysteine in the triple helical domain) have been reported in individuals w/classic EDS & aneurysm & dissection of large vessels (PMID: 20301422;20301667); to: COL1A1 is mostly associated with osteogenesis imperfecta however, substitutions of arginine by cysteine in the triple helical domain) have been reported in individuals w/classic EDS & aneurysm & dissection of large vessels (PMID: 20301422;20301667)

The mild forms are usually caused by haploinsufficiency and result in a reduced amount of normal type I collagen, the severe and lethal forms result from dominant negative variants which produce structural defects in the collagen molecule (PMID:12362985).
Mendeliome v0.13653 COL1A1 Ain Roesley Marked gene: COL1A1 as ready
Mendeliome v0.13653 COL1A1 Ain Roesley Gene: col1a1 has been classified as Green List (High Evidence).
Mendeliome v0.13653 COL1A1 Ain Roesley Publications for gene: COL1A1 were set to
Mendeliome v0.13653 COL1A1 Ain Roesley Phenotypes for gene: COL1A1 were changed from to Caffey disease MIM#114000; Combined osteogenesis imperfecta and Ehlers-Danlos syndrome 1 MIM#619115; Ehlers-Danlos syndrome, arthrochalasia type, 1 MIM#130060; Osteogenesis imperfecta, type I MIM#166200; Osteogenesis imperfecta, type II MIM#166210; Osteogenesis imperfecta, type III MIM#259420; Osteogenesis imperfecta, type IV MIM#166220
Mendeliome v0.13653 COL1A1 Ain Roesley Mode of inheritance for gene: COL1A1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13652 COL1A1 Ain Roesley reviewed gene: COL1A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 20301422, 20301667, 30071989, 28981071, 12362985, 28956891; Phenotypes: Caffey disease MIM#114000, Combined osteogenesis imperfecta and Ehlers-Danlos syndrome 1 MIM#619115, Ehlers-Danlos syndrome, arthrochalasia type, 1 MIM#130060, Osteogenesis imperfecta, type I MIM#166200, Osteogenesis imperfecta, type II MIM#166210, Osteogenesis imperfecta, type III MIM#259420, Osteogenesis imperfecta, type IV MIM#166220; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted; Current diagnostic: yes
Mendeliome v0.13652 COL18A1 Ain Roesley Marked gene: COL18A1 as ready
Mendeliome v0.13652 COL18A1 Ain Roesley Gene: col18a1 has been classified as Green List (High Evidence).
Mendeliome v0.13652 COL18A1 Ain Roesley Phenotypes for gene: COL18A1 were changed from to Knobloch syndrome, type 1, MIM# 267750
Mendeliome v0.13651 COL18A1 Ain Roesley Publications for gene: COL18A1 were set to
Mendeliome v0.13651 COL18A1 Ain Roesley Mode of inheritance for gene: COL18A1 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13651 COL18A1 Ain Roesley Mode of inheritance for gene: COL18A1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13650 COL18A1 Ain Roesley reviewed gene: COL18A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 27259167, 25456301; Phenotypes: Knobloch syndrome, type 1, MIM# 267750; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13650 COL17A1 Ain Roesley Marked gene: COL17A1 as ready
Mendeliome v0.13650 COL17A1 Ain Roesley Gene: col17a1 has been classified as Green List (High Evidence).
Mendeliome v0.13650 COL17A1 Ain Roesley Publications for gene: COL17A1 were set to
Mendeliome v0.13650 COL17A1 Ain Roesley Phenotypes for gene: COL17A1 were changed from to Epidermolysis bullosa, junctional 4, intermediate MIM#619787; Epithelial recurrent erosion dystrophy MIM#122400
Mendeliome v0.13650 COL17A1 Ain Roesley Mode of inheritance for gene: COL17A1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13649 COL17A1 Ain Roesley commented on gene: COL17A1: For Epithelial recurrent erosion dystrophy, AD:
Multiple families reported, c.3156C>T is recurrent.

For EB, AR:
well established association (GeneReviews PMID:20301304)
Mendeliome v0.13649 COL17A1 Ain Roesley reviewed gene: COL17A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 27309958, 29708937, 25676728, 20301304; Phenotypes: Epidermolysis bullosa, junctional 4, intermediate MIM#619787, Epithelial recurrent erosion dystrophy MIM#122400; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13649 COL12A1 Ain Roesley Marked gene: COL12A1 as ready
Mendeliome v0.13649 COL12A1 Ain Roesley Gene: col12a1 has been classified as Green List (High Evidence).
Mendeliome v0.13649 COL12A1 Ain Roesley Publications for gene: COL12A1 were set to 28306229; 31273343; 24334604
Mendeliome v0.13648 COL12A1 Ain Roesley Publications for gene: COL12A1 were set to
Mendeliome v0.13648 COL12A1 Ain Roesley Phenotypes for gene: COL12A1 were changed from to Myopathic EDS; Bethlem myopathy 2 MIM#616471; Ullrich congenital muscular dystrophy 2 MIM#616470
Mendeliome v0.13648 COL12A1 Ain Roesley Mode of inheritance for gene: COL12A1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13647 COL12A1 Ain Roesley reviewed gene: COL12A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 28306229, 31273343, 24334604; Phenotypes: Myopathic EDS, Bethlem myopathy 2 MIM#616471, Ullrich congenital muscular dystrophy 2 MIM#616470; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13647 COL11A2 Ain Roesley Marked gene: COL11A2 as ready
Mendeliome v0.13647 COL11A2 Ain Roesley Gene: col11a2 has been classified as Green List (High Evidence).
Mendeliome v0.13647 COL11A2 Ain Roesley Phenotypes for gene: COL11A2 were changed from to Stickler syndrome type 3; Deafness, autosomal dominant 13 MIM#601868; Deafness, autosomal recessive 53 MIM#609706; Fibrochondrogenesis 2 MIM#614524; Otospondylomegaepiphyseal dysplasia, autosomal dominant MIM#184840; Otospondylomegaepiphyseal dysplasia, autosomal recessive MIM#215150
Mendeliome v0.13646 COL11A2 Ain Roesley Publications for gene: COL11A2 were set to
Mendeliome v0.13646 COL11A2 Ain Roesley Mode of inheritance for gene: COL11A2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13645 COL11A2 Ain Roesley reviewed gene: COL11A2: Rating: GREEN; Mode of pathogenicity: None; Publications: 10581026, 25633957, 16033917, 25240749, 22796475, 20112039; Phenotypes: Stickler syndrome type 3, Deafness, autosomal dominant 13 MIM#601868, Deafness, autosomal recessive 53 MIM#609706, Fibrochondrogenesis 2 MIM#614524, Otospondylomegaepiphyseal dysplasia, autosomal dominant MIM#184840, Otospondylomegaepiphyseal dysplasia, autosomal recessive MIM#215150; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13645 COG7 Ain Roesley Marked gene: COG7 as ready
Mendeliome v0.13645 COG7 Ain Roesley Gene: cog7 has been classified as Green List (High Evidence).
Mendeliome v0.13645 COG7 Ain Roesley Phenotypes for gene: COG7 were changed from to Congenital disorder of glycosylation, type IIe , MIM#608779
Mendeliome v0.13644 COG7 Ain Roesley Publications for gene: COG7 were set to
Mendeliome v0.13644 COG7 Ain Roesley Mode of inheritance for gene: COG7 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13643 COG7 Ain Roesley reviewed gene: COG7: Rating: GREEN; Mode of pathogenicity: None; Publications: 15107842, 17356545, 28883096; Phenotypes: Congenital disorder of glycosylation, type IIe , MIM#608779; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13643 COASY Ain Roesley Marked gene: COASY as ready
Mendeliome v0.13643 COASY Ain Roesley Gene: coasy has been classified as Green List (High Evidence).
Mendeliome v0.13643 COASY Ain Roesley Publications for gene: COASY were set to
Mendeliome v0.13643 COASY Ain Roesley Phenotypes for gene: COASY were changed from to Neurodegeneration with brain iron accumulation 6 MIM#615643; Pontocerebellar hypoplasia, type 12 MIM#v618266
Mendeliome v0.13643 COASY Ain Roesley Mode of inheritance for gene: COASY was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13642 COASY Ain Roesley changed review comment from: Green for both NBIA and PCH; to: Green for both NBIA and PCH

only 2 variants reported for PCH - a fs (c.1549_1550delAG) and c.1486-3C>G (Recurrent)
Mendeliome v0.13642 COASY Ain Roesley reviewed gene: COASY: Rating: GREEN; Mode of pathogenicity: None; Publications: 30089828, 28489334, 24360804, 35499143; Phenotypes: Neurodegeneration with brain iron accumulation 6 MIM#615643, Pontocerebellar hypoplasia, type 12 MIM#v618266; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Fetal anomalies v1.24 COASY Ain Roesley Publications for gene: COASY were set to 30089828
Fetal anomalies v1.23 COASY Ain Roesley Classified gene: COASY as Green List (high evidence)
Fetal anomalies v1.23 COASY Ain Roesley Gene: coasy has been classified as Green List (High Evidence).
Fetal anomalies v1.22 COASY Ain Roesley edited their review of gene: COASY: Changed rating: GREEN; Changed mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Fetal anomalies v1.22 COASY Ain Roesley reviewed gene: COASY: Rating: ; Mode of pathogenicity: None; Publications: 35499143; Phenotypes: Pontocerebellar hypoplasia, type 12, MIM#618266; Mode of inheritance: None; Current diagnostic: yes
Arthrogryposis v0.341 COASY Ain Roesley changed review comment from: 5 more families with arthrogryposis reported in 4x. But 1x family did not have the affecteds sequenced, presumed homozygous as parents are carriers.


c.1486-3C>G is the variant identified in all families; to: 5 more families with PCH and arthrogryposis reported in 4x. But 1x family did not have the affecteds sequenced, presumed homozygous as parents are carriers.


c.1486-3C>G is the variant identified in all families
Arthrogryposis v0.341 COASY Ain Roesley Publications for gene: COASY were set to 30089828
Arthrogryposis v0.341 COASY Ain Roesley Classified gene: COASY as Green List (high evidence)
Arthrogryposis v0.341 COASY Ain Roesley Gene: coasy has been classified as Green List (High Evidence).
Arthrogryposis v0.340 COASY Ain Roesley changed review comment from: 5 more families. But 1 family did not have the affecteds sequenced, presumed homozygous as parents are carriers.

arthrogryposis reported in 4 families

c.1486-3C>G is the variant identified in all families; to: 5 more families with arthrogryposis reported in 4x. But 1x family did not have the affecteds sequenced, presumed homozygous as parents are carriers.


c.1486-3C>G is the variant identified in all families
Arthrogryposis v0.340 COASY Ain Roesley reviewed gene: COASY: Rating: GREEN; Mode of pathogenicity: None; Publications: 35499143; Phenotypes: Pontocerebellar hypoplasia, type 12 MIM#618266; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Cerebellar and Pontocerebellar Hypoplasia v1.48 COASY Ain Roesley Publications for gene: COASY were set to PMID: 30089828; 27021474; 24360804
Cerebellar and Pontocerebellar Hypoplasia v1.48 COASY Ain Roesley Classified gene: COASY as Green List (high evidence)
Cerebellar and Pontocerebellar Hypoplasia v1.48 COASY Ain Roesley Gene: coasy has been classified as Green List (High Evidence).
Cerebellar and Pontocerebellar Hypoplasia v1.47 COASY Ain Roesley reviewed gene: COASY: Rating: GREEN; Mode of pathogenicity: None; Publications: 35499143; Phenotypes: Pontocerebellar hypoplasia, type 12 MIM#618266; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13642 HMBS Zornitza Stark Marked gene: HMBS as ready
Mendeliome v0.13642 HMBS Zornitza Stark Gene: hmbs has been classified as Green List (High Evidence).
Mendeliome v0.13642 HMBS Zornitza Stark Phenotypes for gene: HMBS were changed from to Porphyria, acute intermittent, MIM#176000; Porphyria, acute intermittent, non-erythroid variant, MIM#176000
Mendeliome v0.13641 HMBS Zornitza Stark Mode of inheritance for gene: HMBS was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13640 HMBS Zornitza Stark reviewed gene: HMBS: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Porphyria, acute intermittent, MIM#176000, Porphyria, acute intermittent, non-erythroid variant, MIM#176000; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13640 HK1 Zornitza Stark Marked gene: HK1 as ready
Mendeliome v0.13640 HK1 Zornitza Stark Gene: hk1 has been classified as Green List (High Evidence).
Mendeliome v0.13640 HK1 Zornitza Stark Phenotypes for gene: HK1 were changed from to Neuropathy, hereditary motor and sensory, Russe type , MIM#605285; Haemolytic anaemia due to hexokinase deficiency, MIM# 235700; Neurodevelopmental disorder with visual defects and brain anomalies, MIM# 618547; Retinitis pigmentosa 79, MIM# 617460
Mendeliome v0.13639 HK1 Zornitza Stark Publications for gene: HK1 were set to
Mendeliome v0.13638 HK1 Zornitza Stark Mode of inheritance for gene: HK1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13637 HK1 Zornitza Stark changed review comment from: HMSNR is an autosomal recessive progressive complex peripheral neuropathy characterized by onset in the first decade of distal lower limb weakness and muscle atrophy resulting in walking difficulties. Distal impairment of the upper limbs usually occurs later, as does proximal lower limb weakness. There is distal sensory impairment, with pes cavus and areflexia. Laboratory studies suggest that it is a myelinopathy resulting in reduced nerve conduction velocities in the demyelinating range as well as a length-dependent axonopathy.

Founder variant in the Roma, -3818-195G-C, AltT2 EXON in 5'UTR identified in multiple families.

Note gene is associated with other phenotypes.; to: Bi-allelic variants and neuropathy: HMSNR is an autosomal recessive progressive complex peripheral neuropathy characterized by onset in the first decade of distal lower limb weakness and muscle atrophy resulting in walking difficulties. Distal impairment of the upper limbs usually occurs later, as does proximal lower limb weakness. There is distal sensory impairment, with pes cavus and areflexia. Laboratory studies suggest that it is a myelinopathy resulting in reduced nerve conduction velocities in the demyelinating range as well as a length-dependent axonopathy.

Founder variant in the Roma, -3818-195G-C, AltT2 EXON in 5'UTR identified in multiple families.

Note gene is associated with other phenotypes.
Mendeliome v0.13637 HK1 Zornitza Stark edited their review of gene: HK1: Added comment: Mono-allelic variants and ID: PMID30778173, 7 patients from 6 unrelated families with denovo missense variants in the N-terminal half of HK1

Mono-allelic variants and RP: Seven families reported with the same heterozygous missense variant, p.Glu847Lys and RP from different ethnicities. Some supportive evidence. Variant is present in 3 hets in gnomad.

Bi-allelic variants and haemolytic anaemia: more than 10 families reported.; Changed publications: 19536174, 30778173, 25316723, 25190649, 31621442, 32814480, 7655856, 12393545, 33361148, 31119733, 27282571; Changed phenotypes: Neuropathy, hereditary motor and sensory, Russe type , MIM#605285, Haemolytic anaemia due to hexokinase deficiency, MIM# 235700, Neurodevelopmental disorder with visual defects and brain anomalies, MIM# 618547, Retinitis pigmentosa 79, MIM# 617460; Changed mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4729 GNAI1 Zornitza Stark Phenotypes for gene: GNAI1 were changed from Intellectual disability; seizures; hypotonia to Neurodevelopmental disorder with hypotonia, impaired speech, and behavioral abnormalities, MIM# 619854
Intellectual disability syndromic and non-syndromic v0.4728 GNAI1 Zornitza Stark edited their review of gene: GNAI1: Changed phenotypes: Neurodevelopmental disorder with hypotonia, impaired speech, and behavioral abnormalities, MIM# 619854
Genetic Epilepsy v0.1583 GNAI1 Zornitza Stark Phenotypes for gene: GNAI1 were changed from Intellectual disability; seizures; hypotonia to Neurodevelopmental disorder with hypotonia, impaired speech, and behavioral abnormalities, MIM# 619854
Genetic Epilepsy v0.1582 GNAI1 Zornitza Stark edited their review of gene: GNAI1: Changed phenotypes: Neurodevelopmental disorder with hypotonia, impaired speech, and behavioral abnormalities, MIM# 619854
Mendeliome v0.13637 GNAI1 Zornitza Stark Phenotypes for gene: GNAI1 were changed from Intellectual disability; seizures; hypotonia to Neurodevelopmental disorder with hypotonia, impaired speech, and behavioral abnormalities, MIM# 619854
Mendeliome v0.13636 GNAI1 Zornitza Stark edited their review of gene: GNAI1: Changed phenotypes: Neurodevelopmental disorder with hypotonia, impaired speech, and behavioral abnormalities, MIM# 619854
Mendeliome v0.13636 RPE65 Zornitza Stark Marked gene: RPE65 as ready
Mendeliome v0.13636 RPE65 Zornitza Stark Gene: rpe65 has been classified as Green List (High Evidence).
Mendeliome v0.13636 RPE65 Zornitza Stark Phenotypes for gene: RPE65 were changed from to Leber congenital amaurosis 2 MIM#204100; Retinitis pigmentosa 20 MIM#613794; Retinitis pigmentosa 87 with choroidal involvement MIM#618697
Mendeliome v0.13635 RPE65 Zornitza Stark Publications for gene: RPE65 were set to
Mendeliome v0.13634 RPE65 Zornitza Stark Mode of inheritance for gene: RPE65 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Macrocephaly_Megalencephaly v0.111 RRAS Zornitza Stark Marked gene: RRAS as ready
Macrocephaly_Megalencephaly v0.111 RRAS Zornitza Stark Gene: rras has been classified as Red List (Low Evidence).
Mendeliome v0.13633 SLC24A1 Zornitza Stark Marked gene: SLC24A1 as ready
Mendeliome v0.13633 SLC24A1 Zornitza Stark Gene: slc24a1 has been classified as Green List (High Evidence).
Mendeliome v0.13633 SLC24A1 Zornitza Stark Phenotypes for gene: SLC24A1 were changed from to Night blindness, congenital stationary (complete), 1D, autosomal recessive, MIM#613830, MONDO:0013450
Mendeliome v0.13632 SLC24A1 Zornitza Stark Publications for gene: SLC24A1 were set to
Mendeliome v0.13631 SLC24A1 Zornitza Stark Mode of inheritance for gene: SLC24A1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13630 SLC25A1 Zornitza Stark Marked gene: SLC25A1 as ready
Mendeliome v0.13630 SLC25A1 Zornitza Stark Gene: slc25a1 has been classified as Green List (High Evidence).
Mendeliome v0.13630 SLC25A1 Zornitza Stark Phenotypes for gene: SLC25A1 were changed from to Combined D-2- and L-2-hydroxyglutaric aciduria MIM#: 615182, MONDO:0014072; Myasthenic syndrome, congenital, 23, presynaptic, MIM#618197, MONDO:0032596
Mendeliome v0.13629 SLC25A1 Zornitza Stark Publications for gene: SLC25A1 were set to
Mendeliome v0.13628 SLC25A1 Zornitza Stark Mode of inheritance for gene: SLC25A1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Macrocephaly_Megalencephaly v0.111 RRAS Zornitza Stark Phenotypes for gene: RRAS were changed from Noonan syndrome, MONDO:0018997 to Noonan syndrome, MONDO:0018997
Macrocephaly_Megalencephaly v0.111 RRAS Zornitza Stark Phenotypes for gene: RRAS were changed from to Noonan syndrome, MONDO:0018997
Mendeliome v0.13627 RRAS Zornitza Stark Marked gene: RRAS as ready
Mendeliome v0.13627 RRAS Zornitza Stark Gene: rras has been classified as Amber List (Moderate Evidence).
Macrocephaly_Megalencephaly v0.110 RRAS Zornitza Stark Publications for gene: RRAS were set to
Macrocephaly_Megalencephaly v0.109 RRAS Zornitza Stark Mode of inheritance for gene: RRAS was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Macrocephaly_Megalencephaly v0.108 RRAS Zornitza Stark Classified gene: RRAS as Red List (low evidence)
Macrocephaly_Megalencephaly v0.108 RRAS Zornitza Stark Gene: rras has been classified as Red List (Low Evidence).
Mendeliome v0.13627 RRAS Zornitza Stark Phenotypes for gene: RRAS were changed from to Noonan syndrome, MONDO:0018997
Mendeliome v0.13626 RRAS Zornitza Stark Publications for gene: RRAS were set to
Mendeliome v0.13625 RRAS Zornitza Stark Mode of inheritance for gene: RRAS was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13624 RRAS Zornitza Stark Classified gene: RRAS as Amber List (moderate evidence)
Mendeliome v0.13624 RRAS Zornitza Stark Gene: rras has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13623 RRAS Zornitza Stark reviewed gene: RRAS: Rating: AMBER; Mode of pathogenicity: None; Publications: 24705357; Phenotypes: Noonan syndrome, MONDO:0018997; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13623 SLC11A1 Zornitza Stark Marked gene: SLC11A1 as ready
Mendeliome v0.13623 SLC11A1 Zornitza Stark Gene: slc11a1 has been classified as Red List (Low Evidence).
Mendeliome v0.13623 SLC11A1 Zornitza Stark Phenotypes for gene: SLC11A1 were changed from to {Buruli ulcer, susceptibility to}, MIM#610446; {Mycobacterium tuberculosis, susceptibility to infection by} , MIM#607948
Mendeliome v0.13622 SLC11A1 Zornitza Stark Mode of inheritance for gene: SLC11A1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13621 SLC11A1 Zornitza Stark Publications for gene: SLC11A1 were set to
Mendeliome v0.13620 SLC11A1 Zornitza Stark Classified gene: SLC11A1 as Red List (low evidence)
Mendeliome v0.13620 SLC11A1 Zornitza Stark Gene: slc11a1 has been classified as Red List (Low Evidence).
Mendeliome v0.13619 LIPT2 Zornitza Stark commented on gene: LIPT2: Three individuals from two unrelated families, functional data.
Mendeliome v0.13619 LIPT2 Zornitza Stark edited their review of gene: LIPT2: Changed publications: 28757203
Mendeliome v0.13619 LIPT2 Zornitza Stark reviewed gene: LIPT2: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Encephalopathy, neonatal severe, with lactic acidosis and brain abnormalities, MIM# 617668; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13619 SIL1 Zornitza Stark Marked gene: SIL1 as ready
Mendeliome v0.13619 SIL1 Zornitza Stark Gene: sil1 has been classified as Green List (High Evidence).
Mendeliome v0.13619 SIL1 Zornitza Stark Phenotypes for gene: SIL1 were changed from to Marinesco-Sjogren syndrome, MIM#248800; MONDO#0009567
Mendeliome v0.13618 SIL1 Zornitza Stark Publications for gene: SIL1 were set to
Mendeliome v0.13617 SIL1 Zornitza Stark Mode of inheritance for gene: SIL1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13616 LIPC Zornitza Stark edited their review of gene: LIPC: Changed phenotypes: Hepatic lipase deficiency, MIM# 614025, Hyperlipidemia due to hepatic triglyceride lipase deficiency, MONDO:0013533
Mendeliome v0.13616 LIPC Zornitza Stark edited their review of gene: LIPC: Changed publications: 1671786, 12777476, 1883393, 23219720, 26423094, 22464213, 22798447
Mendeliome v0.13616 LIPC Zornitza Stark edited their review of gene: LIPC: Changed mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13616 LIPC Zornitza Stark reviewed gene: LIPC: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Hepatic lipase deficiency, MIM# 614025; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Cataract v0.333 LIM2 Zornitza Stark Marked gene: LIM2 as ready
Cataract v0.333 LIM2 Zornitza Stark Gene: lim2 has been classified as Green List (High Evidence).
Cataract v0.333 LIM2 Zornitza Stark Phenotypes for gene: LIM2 were changed from to Cataract 19, multiple types, MIM# 615277
Cataract v0.332 LIM2 Zornitza Stark Publications for gene: LIM2 were set to
Cataract v0.331 LIM2 Zornitza Stark Mode of inheritance for gene: LIM2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Cataract v0.330 LIM2 Zornitza Stark reviewed gene: LIM2: Rating: GREEN; Mode of pathogenicity: None; Publications: 7814360, 11917274, 18596884, 33708862, 32202185, 21617753; Phenotypes: Cataract 19, multiple types, MIM# 615277; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4728 MCCC2 Zornitza Stark Marked gene: MCCC2 as ready
Intellectual disability syndromic and non-syndromic v0.4728 MCCC2 Zornitza Stark Gene: mccc2 has been classified as Amber List (Moderate Evidence).
Intellectual disability syndromic and non-syndromic v0.4728 MCCC2 Zornitza Stark Phenotypes for gene: MCCC2 were changed from to 3-Methylcrotonyl-CoA carboxylase 2 deficiency (MIM#210210)
Intellectual disability syndromic and non-syndromic v0.4727 MCCC2 Zornitza Stark Publications for gene: MCCC2 were set to
Intellectual disability syndromic and non-syndromic v0.4726 MCCC2 Zornitza Stark Mode of inheritance for gene: MCCC2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4725 MCCC2 Zornitza Stark Classified gene: MCCC2 as Amber List (moderate evidence)
Intellectual disability syndromic and non-syndromic v0.4725 MCCC2 Zornitza Stark Gene: mccc2 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13616 RPE65 Belinda Chong reviewed gene: RPE65: Rating: GREEN; Mode of pathogenicity: None; Publications: 14962443, 12960219, 11786058, 21654732, 27307694, 9501220, 16754667, 15557452; Phenotypes: Leber congenital amaurosis 2 MIM#204100, Retinitis pigmentosa 20 MIM#613794, Retinitis pigmentosa 87 with choroidal involvement MIM#618697; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal; Current diagnostic: yes
Intellectual disability syndromic and non-syndromic v0.4724 MCCC2 Zornitza Stark reviewed gene: MCCC2: Rating: AMBER; Mode of pathogenicity: None; Publications: ; Phenotypes: 3-Methylcrotonyl-CoA carboxylase 2 deficiency (MIM#210210); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4724 SIK1 Zornitza Stark Marked gene: SIK1 as ready
Intellectual disability syndromic and non-syndromic v0.4724 SIK1 Zornitza Stark Gene: sik1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4724 SIK1 Zornitza Stark Phenotypes for gene: SIK1 were changed from to Developmental and epileptic encephalopathy 30, MIM#616341; developmental and epileptic encephalopathy, MONDO#0100062
Intellectual disability syndromic and non-syndromic v0.4723 SIK1 Zornitza Stark Publications for gene: SIK1 were set to
Intellectual disability syndromic and non-syndromic v0.4722 SIK1 Zornitza Stark Mode of inheritance for gene: SIK1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Intellectual disability syndromic and non-syndromic v0.4721 SIK1 Zornitza Stark reviewed gene: SIK1: Rating: GREEN; Mode of pathogenicity: None; Publications: 25839329, 27966542, 35267137; Phenotypes: Developmental and epileptic encephalopathy 30, MIM#616341, developmental and epileptic encephalopathy, MONDO#0100062; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Genetic Epilepsy v0.1582 SIK1 Zornitza Stark Marked gene: SIK1 as ready
Genetic Epilepsy v0.1582 SIK1 Zornitza Stark Gene: sik1 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1582 SIK1 Zornitza Stark Phenotypes for gene: SIK1 were changed from to Developmental and epileptic encephalopathy 30, MIM#616341; developmental and epileptic encephalopathy, MONDO#0100062
Genetic Epilepsy v0.1581 SIK1 Zornitza Stark Publications for gene: SIK1 were set to
Genetic Epilepsy v0.1580 SIK1 Zornitza Stark Mode of inheritance for gene: SIK1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Genetic Epilepsy v0.1579 SIK1 Zornitza Stark reviewed gene: SIK1: Rating: GREEN; Mode of pathogenicity: None; Publications: 25839329, 27966542, 35267137; Phenotypes: Developmental and epileptic encephalopathy 30, MIM#616341, developmental and epileptic encephalopathy, MONDO#0100062; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13616 SLC24A1 Manny Jacobs reviewed gene: SLC24A1: Rating: GREEN; Mode of pathogenicity: None; Publications: 35486108, 35446361, 20850105, 26822852; Phenotypes: Night blindness, congenital stationary (complete), 1D, autosomal recessive, MIM#613830, MONDO:0013450; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13616 SIK1 Zornitza Stark Marked gene: SIK1 as ready
Mendeliome v0.13616 SIK1 Zornitza Stark Gene: sik1 has been classified as Green List (High Evidence).
Mendeliome v0.13616 SIK1 Zornitza Stark Phenotypes for gene: SIK1 were changed from to Developmental and epileptic encephalopathy 30, MIM#616341; developmental and epileptic encephalopathy, MONDO#0100062
Mendeliome v0.13615 SIK1 Zornitza Stark Publications for gene: SIK1 were set to
Mendeliome v0.13614 SIK1 Zornitza Stark Mode of inheritance for gene: SIK1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13613 SLC25A1 Manny Jacobs reviewed gene: SLC25A1: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 26870663, 31527857, 31808147, 23561848, 23393310; Phenotypes: Combined D-2- and L-2-hydroxyglutaric aciduria MIM#: 615182, MONDO:0014072, Myasthenic syndrome, congenital, 23, presynaptic, MIM#618197, MONDO:0032596; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Macrocephaly_Megalencephaly v0.107 RRAS Belinda Chong reviewed gene: RRAS: Rating: RED; Mode of pathogenicity: None; Publications: 24705357, 32815881; Phenotypes: Noonan syndrome; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13613 RRAS Belinda Chong edited their review of gene: RRAS: Changed rating: AMBER
Mendeliome v0.13613 RRAS Belinda Chong changed review comment from: Catts et al (2021) identified a 7-year-old boy with a history of craniosynostosis, congenital heart defect, and mild dysmorphic features who was incidentally found to have pediatric MDS with monosomy 7 in the context of previously unrecognized germline RRAS mutation. A heterozygous c.116_118dup (NM_006270.5) variant resulting in p.G39dup was identified and excluded in an unaffected sibling, and both parents.

Two individuals reported. One de novo variant, the inheritance of the other variant uncertain. Some supportive functional data. Rated as LIMITED by ClinGen (reviewed 27/04/2018).; to: Catts et al (2021) identified a 7-year-old boy with a history of craniosynostosis, congenital heart defect, and mild dysmorphic features who was incidentally found to have pediatric MDS with monosomy 7 in the context of previously unrecognized germline RRAS mutation. A heterozygous c.116_118dup (NM_006270.5) variant resulting in p.G39dup was identified and excluded in an unaffected sibling, and both parents.

Two individuals reported. One de novo variant, the inheritance of the other variant uncertain. Some supportive functional data. Rated as LIMITED by ClinGen (reviewed 27/04/2018).
Mendeliome v0.13613 RRAS Belinda Chong reviewed gene: RRAS: Rating: GREEN; Mode of pathogenicity: None; Publications: 24705357, 32815881; Phenotypes: Noonan syndrome; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13613 HIBCH Zornitza Stark Marked gene: HIBCH as ready
Mendeliome v0.13613 HIBCH Zornitza Stark Gene: hibch has been classified as Green List (High Evidence).
Mendeliome v0.13613 HIBCH Zornitza Stark Phenotypes for gene: HIBCH were changed from to 3-hydroxyisobutryl-CoA hydrolase deficiency, MIM# 250620
Mendeliome v0.13612 HIBCH Zornitza Stark Publications for gene: HIBCH were set to
Mendeliome v0.13611 HIBCH Zornitza Stark Mode of inheritance for gene: HIBCH was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13610 HIBCH Zornitza Stark reviewed gene: HIBCH: Rating: GREEN; Mode of pathogenicity: None; Publications: 26026795, 25251209, 24299452, 32677093; Phenotypes: 3-hydroxyisobutryl-CoA hydrolase deficiency, MIM# 250620; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13610 HGF Zornitza Stark Marked gene: HGF as ready
Mendeliome v0.13610 HGF Zornitza Stark Gene: hgf has been classified as Green List (High Evidence).
Mendeliome v0.13610 HGF Zornitza Stark Phenotypes for gene: HGF were changed from to Deafness, autosomal recessive 39, MIM# 608265
Mendeliome v0.13609 HGF Zornitza Stark Publications for gene: HGF were set to
Mendeliome v0.13608 HGF Zornitza Stark Mode of inheritance for gene: HGF was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13607 HGF Zornitza Stark Tag deep intronic tag was added to gene: HGF.
Tag founder tag was added to gene: HGF.
Mendeliome v0.13607 HGF Zornitza Stark reviewed gene: HGF: Rating: GREEN; Mode of pathogenicity: None; Publications: 19576567; Phenotypes: Deafness, autosomal recessive 39, MIM# 608265; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Deafness_IsolatedAndComplex v1.124 HGF Zornitza Stark edited their review of gene: HGF: Changed mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13607 HGD Zornitza Stark Marked gene: HGD as ready
Mendeliome v0.13607 HGD Zornitza Stark Gene: hgd has been classified as Green List (High Evidence).
Mendeliome v0.13607 HGD Zornitza Stark Phenotypes for gene: HGD were changed from to Alkaptonuria MIM#203500; Disorders of phenylalanine or tyrosine metabolism
Mendeliome v0.13606 HGD Zornitza Stark Publications for gene: HGD were set to
Mendeliome v0.13605 HGD Zornitza Stark Mode of inheritance for gene: HGD was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13604 HFE Zornitza Stark Marked gene: HFE as ready
Mendeliome v0.13604 HFE Zornitza Stark Gene: hfe has been classified as Green List (High Evidence).
Mendeliome v0.13604 HFE Zornitza Stark Phenotypes for gene: HFE were changed from to Haemochromatosis, MIM# 235200
Mendeliome v0.13603 HFE Zornitza Stark Mode of inheritance for gene: HFE was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13602 HFE Zornitza Stark reviewed gene: HFE: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Haemochromatosis, MIM# 235200; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13602 HESX1 Zornitza Stark Marked gene: HESX1 as ready
Mendeliome v0.13602 HESX1 Zornitza Stark Gene: hesx1 has been classified as Green List (High Evidence).
Mendeliome v0.13602 HESX1 Zornitza Stark Phenotypes for gene: HESX1 were changed from to Growth hormone deficiency with pituitary anomalies, MIM#182230; Pituitary hormone deficiency, combined, 5, MIM#182230; Septooptic dysplasia, MIM#182230
Mendeliome v0.13601 HESX1 Zornitza Stark Mode of inheritance for gene: HESX1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13600 HESX1 Zornitza Stark reviewed gene: HESX1: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Growth hormone deficiency with pituitary anomalies, MIM#182230, Pituitary hormone deficiency, combined, 5, MIM#182230, Septooptic dysplasia, MIM#182230; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4721 CHD8 Zornitza Stark Phenotypes for gene: CHD8 were changed from {Autism, susceptibility to, 18} 615032; CHD8-related neurodevelopmental syndrome to {Autism, susceptibility to, 18} 615032; Neurodevelopmental disorder, MONDO:0700092, CHD8-associated
Intellectual disability syndromic and non-syndromic v0.4720 CHD8 Zornitza Stark edited their review of gene: CHD8: Changed phenotypes: {Autism, susceptibility to, 18} 615032, Neurodevelopmental disorder, MONDO:0700092, CHD8-associated
Overgrowth v1.8 CHD8 Zornitza Stark Phenotypes for gene: CHD8 were changed from {Autism, susceptibility to, 18} 615032; CHD8-related neurodevelopmental syndrome to {Autism, susceptibility to, 18} 615032; Neurodevelopmental disorder, MONDO:0700092, CHD8-associated
Overgrowth v1.7 CHD8 Zornitza Stark edited their review of gene: CHD8: Changed phenotypes: {Autism, susceptibility to, 18} 615032, Neurodevelopmental disorder, MONDO:0700092, CHD8-associated
Mendeliome v0.13600 CHD8 Zornitza Stark Phenotypes for gene: CHD8 were changed from {Autism, susceptibility to, 18} 615032; CHD8-related neurodevelopmental syndrome to {Autism, susceptibility to, 18} 615032; Neurodevelopmental disorder, MONDO:0700092, CHD8-associated
Mendeliome v0.13599 CHD8 Zornitza Stark edited their review of gene: CHD8: Changed phenotypes: {Autism, susceptibility to, 18} 615032, Neurodevelopmental disorder, MONDO:0700092, CHD8-associated
Mendeliome v0.13599 SLC11A1 Samantha Ayres reviewed gene: SLC11A1: Rating: RED; Mode of pathogenicity: None; Publications: 35140349; Phenotypes: {Buruli ulcer, susceptibility to}, MIM#610446, {Mycobacterium tuberculosis, susceptibility to infection by} , MIM#607948; Mode of inheritance: Unknown
Intellectual disability syndromic and non-syndromic v0.4720 HERC1 Zornitza Stark Marked gene: HERC1 as ready
Intellectual disability syndromic and non-syndromic v0.4720 HERC1 Zornitza Stark Gene: herc1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4720 HERC1 Zornitza Stark Phenotypes for gene: HERC1 were changed from to Macrocephaly, dysmorphic facies, and psychomotor retardation, MIM# 617011
Intellectual disability syndromic and non-syndromic v0.4719 HERC1 Zornitza Stark Publications for gene: HERC1 were set to
Intellectual disability syndromic and non-syndromic v0.4718 HERC1 Zornitza Stark Mode of inheritance for gene: HERC1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4717 HERC1 Zornitza Stark reviewed gene: HERC1: Rating: GREEN; Mode of pathogenicity: None; Publications: 28323226, 27108999, 26153217, 26138117, 20041218; Phenotypes: Macrocephaly, dysmorphic facies, and psychomotor retardation, MIM# 617011; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13599 HERC1 Zornitza Stark Marked gene: HERC1 as ready
Mendeliome v0.13599 HERC1 Zornitza Stark Gene: herc1 has been classified as Green List (High Evidence).
Mendeliome v0.13599 HERC1 Zornitza Stark Phenotypes for gene: HERC1 were changed from to Macrocephaly, dysmorphic facies, and psychomotor retardation, MIM# 617011
Mendeliome v0.13598 HERC1 Zornitza Stark Publications for gene: HERC1 were set to
Mendeliome v0.13597 HERC1 Zornitza Stark Mode of inheritance for gene: HERC1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13596 HERC1 Zornitza Stark reviewed gene: HERC1: Rating: GREEN; Mode of pathogenicity: None; Publications: 28323226, 27108999, 26153217, 26138117, 20041218; Phenotypes: Macrocephaly, dysmorphic facies, and psychomotor retardation, MIM# 617011; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13596 HEPACAM Zornitza Stark Marked gene: HEPACAM as ready
Mendeliome v0.13596 HEPACAM Zornitza Stark Gene: hepacam has been classified as Green List (High Evidence).
Mendeliome v0.13596 HEPACAM Zornitza Stark Phenotypes for gene: HEPACAM were changed from to Megalencephalic leukoencephalopathy with subcortical cysts 2A, MIM# 613925; Megalencephalic leukoencephalopathy with subcortical cysts 2B, remitting, with or without mental retardation, MIM# 613926
Mendeliome v0.13595 HEPACAM Zornitza Stark Publications for gene: HEPACAM were set to
Mendeliome v0.13594 HEPACAM Zornitza Stark Mode of inheritance for gene: HEPACAM was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13593 HEPACAM Zornitza Stark reviewed gene: HEPACAM: Rating: GREEN; Mode of pathogenicity: None; Publications: 21419380, 21419380; Phenotypes: Megalencephalic leukoencephalopathy with subcortical cysts 2A, MIM# 613925, Megalencephalic leukoencephalopathy with subcortical cysts 2B, remitting, with or without mental retardation, MIM# 613926; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13593 LIPT2 Alison Yeung Marked gene: LIPT2 as ready
Mendeliome v0.13593 LIPT2 Alison Yeung Gene: lipt2 has been classified as Green List (High Evidence).
Mendeliome v0.13593 LIPT2 Alison Yeung Phenotypes for gene: LIPT2 were changed from to Encephalopathy, neonatal severe, with lactic acidosis and brain abnormalities, MIM#617668
Mendeliome v0.13592 SIL1 Samantha Ayres reviewed gene: SIL1: Rating: GREEN; Mode of pathogenicity: None; Publications: 24176978, 16282977, 20301371; Phenotypes: Marinesco-Sjogren syndrome, MIM#248800, MONDO#0009567; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Autoinflammatory Disorders v0.147 DNASE2 Zornitza Stark Phenotypes for gene: DNASE2 were changed from Auto-inflammatory disorder; splenomegaly; glomerulonephritis; liver fibrosis; arthritis; HLH to Autoinflammatory-pancytopaenia syndrome, MIM# 619858
Autoinflammatory Disorders v0.146 DNASE2 Zornitza Stark edited their review of gene: DNASE2: Changed phenotypes: Autoinflammatory-pancytopaenia syndrome, MIM# 619858
Mendeliome v0.13592 DNASE2 Zornitza Stark Phenotypes for gene: DNASE2 were changed from Auto-inflammatory disorder; splenomegaly; glomerulonephritis; liver fibrosis; arthritis; HLH to Autoinflammatory-pancytopaenia syndrome, MIM# 619858
Mendeliome v0.13591 DNASE2 Zornitza Stark edited their review of gene: DNASE2: Changed phenotypes: Autoinflammatory-pancytopenia syndrome, MIM# 619858
Mendeliome v0.13591 LIPT2 Alison Yeung Publications for gene: LIPT2 were set to
Mendeliome v0.13590 LIPT2 Alison Yeung Mode of inheritance for gene: LIPT2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13589 LIPH Alison Yeung Marked gene: LIPH as ready
Mendeliome v0.13589 LIPH Alison Yeung Gene: liph has been classified as Green List (High Evidence).
Mendeliome v0.13589 LIPH Alison Yeung Phenotypes for gene: LIPH were changed from to Woolly hair, autosomal recessive 2 with or without hypotrichosis, MIM# 604379; Hypotrichosis 7, MIM# 604379
Mendeliome v0.13588 LIPH Alison Yeung reviewed gene: LIPH: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Woolly hair, autosomal recessive 2 with or without hypotrichosis, MIM# 604379, Hypotrichosis 7, MIM# 604379; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13588 LIPH Alison Yeung Mode of inheritance for gene: LIPH was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13587 LIPC Alison Yeung Marked gene: LIPC as ready
Mendeliome v0.13587 LIPC Alison Yeung Gene: lipc has been classified as Green List (High Evidence).
Mendeliome v0.13587 LIPC Alison Yeung Phenotypes for gene: LIPC were changed from to Hepatic lipase deficiency MIM#614025; Hyperlipidemia due to hepatic triglyceride lipase deficiency, MONDO:0013533
Mendeliome v0.13586 LIPC Alison Yeung Publications for gene: LIPC were set to
Mendeliome v0.13585 LIPC Alison Yeung Added comment: Comment on mode of inheritance: PMID: 1671786, 12777476, 1883393, 22798447 - 7 cases from 3 unrelated families with hepatic lipase deficiency and biallelic variants.
PMID: 26423094 - null mouse had dyslipidemia on a high cholesterol and fat diet
PMID: 23219720, 22464213 - 2 cases with hyperalphalipoproteinemia and heterozygous variants, with supporting in vitro funcitonal assays
Mendeliome v0.13585 LIPC Alison Yeung Mode of inheritance for gene: LIPC was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13584 LINS1 Alison Yeung Mode of inheritance for gene: LINS1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13583 LINS1 Alison Yeung Marked gene: LINS1 as ready
Mendeliome v0.13583 LINS1 Alison Yeung Gene: lins1 has been classified as Green List (High Evidence).
Mendeliome v0.13583 LINS1 Alison Yeung Phenotypes for gene: LINS1 were changed from to Intellectual developmental disorder, autosomal recessive 27, MIM# 614340
Mendeliome v0.13582 LINS1 Alison Yeung Publications for gene: LINS1 were set to
Intellectual disability syndromic and non-syndromic v0.4717 LINS1 Alison Yeung Phenotypes for gene: LINS1 were changed from Intellectual developmental disorder, autosomal recessive 27, MIM# 614340 to Intellectual developmental disorder, autosomal recessive 27, MIM# 614340
Intellectual disability syndromic and non-syndromic v0.4716 LINS1 Alison Yeung Phenotypes for gene: LINS1 were changed from to Intellectual developmental disorder, autosomal recessive 27, MIM# 614340
Intellectual disability syndromic and non-syndromic v0.4715 LINS1 Alison Yeung Marked gene: LINS1 as ready
Intellectual disability syndromic and non-syndromic v0.4715 LINS1 Alison Yeung Gene: lins1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4715 LINS1 Alison Yeung Publications for gene: LINS1 were set to
Intellectual disability syndromic and non-syndromic v0.4714 LINS1 Alison Yeung Mode of inheritance for gene: LINS1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4713 LINS1 Alison Yeung reviewed gene: LINS1: Rating: GREEN; Mode of pathogenicity: None; Publications: 32802957, 34450347, 32499722, 31922598; Phenotypes: ntellectual developmental disorder, autosomal recessive 27, MIM# 614340; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13581 HCRT Zornitza Stark Marked gene: HCRT as ready
Mendeliome v0.13581 HCRT Zornitza Stark Gene: hcrt has been classified as Red List (Low Evidence).
Mendeliome v0.13581 HCRT Zornitza Stark Phenotypes for gene: HCRT were changed from to Narcolepsy 1 , MIM# 161400
Mendeliome v0.13580 HCRT Zornitza Stark Publications for gene: HCRT were set to
Mendeliome v0.13579 HCRT Zornitza Stark Mode of inheritance for gene: HCRT was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13578 HCRT Zornitza Stark Classified gene: HCRT as Red List (low evidence)
Mendeliome v0.13578 HCRT Zornitza Stark Gene: hcrt has been classified as Red List (Low Evidence).
Mendeliome v0.13577 LIM2 Alison Yeung Marked gene: LIM2 as ready
Mendeliome v0.13577 LIM2 Alison Yeung Gene: lim2 has been classified as Green List (High Evidence).
Mendeliome v0.13577 HCRT Zornitza Stark reviewed gene: HCRT: Rating: RED; Mode of pathogenicity: None; Publications: 10973318, 11148249, 11723284; Phenotypes: Narcolepsy 1 , MIM# 161400; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13577 LIM2 Alison Yeung Phenotypes for gene: LIM2 were changed from to Cataract 19, multiple types, MIM# 615277
Mendeliome v0.13576 LIM2 Alison Yeung Publications for gene: LIM2 were set to
Mendeliome v0.13575 LIM2 Alison Yeung Mode of inheritance for gene: LIM2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4713 HCN1 Zornitza Stark Marked gene: HCN1 as ready
Intellectual disability syndromic and non-syndromic v0.4713 HCN1 Zornitza Stark Gene: hcn1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4713 HCN1 Zornitza Stark Phenotypes for gene: HCN1 were changed from to Developmental and epileptic encephalopathy 24, MIM# 615871; Generalized epilepsy with febrile seizures plus, type 10, MIM# 618482
Mendeliome v0.13574 LIM2 Alison Yeung reviewed gene: LIM2: Rating: GREEN; Mode of pathogenicity: None; Publications: 27814360, 11917274, 18596884, 33708862, 32202185, 21617753; Phenotypes: Cataract 19, multiple types, MIM# 615277; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4712 HCN1 Zornitza Stark Publications for gene: HCN1 were set to
Intellectual disability syndromic and non-syndromic v0.4711 HCN1 Zornitza Stark Mode of inheritance for gene: HCN1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Intellectual disability syndromic and non-syndromic v0.4710 HCN1 Zornitza Stark reviewed gene: HCN1: Rating: GREEN; Mode of pathogenicity: None; Publications: 24747641, 30351409, 30351409; Phenotypes: Developmental and epileptic encephalopathy 24, MIM# 615871, Generalized epilepsy with febrile seizures plus, type 10, MIM# 618482; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Genetic Epilepsy v0.1579 HCN1 Zornitza Stark Marked gene: HCN1 as ready
Genetic Epilepsy v0.1579 HCN1 Zornitza Stark Gene: hcn1 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1579 HCN1 Zornitza Stark Phenotypes for gene: HCN1 were changed from to Developmental and epileptic encephalopathy 24, MIM# 615871; Generalized epilepsy with febrile seizures plus, type 10, MIM# 618482
Genetic Epilepsy v0.1578 HCN1 Zornitza Stark Publications for gene: HCN1 were set to
Genetic Epilepsy v0.1577 HCN1 Zornitza Stark Mode of inheritance for gene: HCN1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Genetic Epilepsy v0.1576 HCN1 Zornitza Stark reviewed gene: HCN1: Rating: GREEN; Mode of pathogenicity: None; Publications: 24747641, 30351409, 30351409; Phenotypes: Developmental and epileptic encephalopathy 24, MIM# 615871, Generalized epilepsy with febrile seizures plus, type 10, MIM# 618482; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13574 HCN1 Zornitza Stark Marked gene: HCN1 as ready
Mendeliome v0.13574 HCN1 Zornitza Stark Gene: hcn1 has been classified as Green List (High Evidence).
Mendeliome v0.13574 HCN1 Zornitza Stark Phenotypes for gene: HCN1 were changed from to Developmental and epileptic encephalopathy 24, MIM# 615871; Generalized epilepsy with febrile seizures plus, type 10, MIM# 618482
Mendeliome v0.13573 HCN1 Zornitza Stark Publications for gene: HCN1 were set to
Mendeliome v0.13572 HCN1 Zornitza Stark Mode of inheritance for gene: HCN1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13571 HCN1 Zornitza Stark reviewed gene: HCN1: Rating: GREEN; Mode of pathogenicity: None; Publications: 24747641, 30351409, 30351409; Phenotypes: Developmental and epileptic encephalopathy 24, MIM# 615871, Generalized epilepsy with febrile seizures plus, type 10, MIM# 618482; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13571 HCCS Zornitza Stark Marked gene: HCCS as ready
Mendeliome v0.13571 HCCS Zornitza Stark Gene: hccs has been classified as Green List (High Evidence).
Mendeliome v0.13571 HCCS Zornitza Stark Phenotypes for gene: HCCS were changed from to Linear skin defects with multiple congenital anomalies 1, MIM# 309801
Mendeliome v0.13570 HCCS Zornitza Stark Publications for gene: HCCS were set to
Mendeliome v0.13569 HCCS Zornitza Stark Mode of inheritance for gene: HCCS was changed from Unknown to X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Mendeliome v0.13568 HCCS Zornitza Stark reviewed gene: HCCS: Rating: GREEN; Mode of pathogenicity: None; Publications: 17033964, 30068298, 24735900; Phenotypes: Linear skin defects with multiple congenital anomalies 1, MIM# 309801; Mode of inheritance: X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Mendeliome v0.13568 HBA2 Zornitza Stark Marked gene: HBA2 as ready
Mendeliome v0.13568 HBA2 Zornitza Stark Gene: hba2 has been classified as Green List (High Evidence).
Mendeliome v0.13568 HBA2 Zornitza Stark Phenotypes for gene: HBA2 were changed from to Erythrocytosis 7, MIM# 617981; Heinz body anaemia, MIM# 140700; Haemoglobin H disease, deletional and nondeletional, MIM# 613978; Thalassaemia, alpha-, MIM# 604131
Intellectual disability syndromic and non-syndromic v0.4710 MCCC2 Teresa Zhao reviewed gene: MCCC2: Rating: AMBER; Mode of pathogenicity: None; Publications: 34899149; Phenotypes: 3-Methylcrotonyl-CoA carboxylase 2 deficiency (MIM#210210); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13567 HBA2 Zornitza Stark Mode of inheritance for gene: HBA2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13566 HBA2 Zornitza Stark Tag SV/CNV tag was added to gene: HBA2.
Mendeliome v0.13566 HBA2 Zornitza Stark reviewed gene: HBA2: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Erythrocytosis 7, MIM# 617981, Heinz body anaemia, MIM# 140700, Haemoglobin H disease, deletional and nondeletional, MIM# 613978, Thalassaemia, alpha-, MIM# 604131; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13566 HBA1 Zornitza Stark edited their review of gene: HBA1: Changed mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13566 HBA1 Zornitza Stark Mode of inheritance for gene: HBA1 was changed from MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13565 HBA1 Zornitza Stark Tag SV/CNV tag was added to gene: HBA1.
Mendeliome v0.13565 HBA1 Zornitza Stark Marked gene: HBA1 as ready
Mendeliome v0.13565 HBA1 Zornitza Stark Gene: hba1 has been classified as Green List (High Evidence).
Mendeliome v0.13565 HBA1 Zornitza Stark Phenotypes for gene: HBA1 were changed from to Erythrocytosis 7, MIM# 617981; Heinz body anemias, alpha-, MIM# 140700; Methemoglobinemia, alpha type , MIM#617973; Thalassemias, alpha-, MIM# 604131; Hemoglobin H disease, nondeletional, MIM# 613978
Mendeliome v0.13564 HBA1 Zornitza Stark Mode of inheritance for gene: HBA1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13563 HBA1 Zornitza Stark reviewed gene: HBA1: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Erythrocytosis 7, MIM# 617981, Heinz body anemias, alpha-, MIM# 140700, Methemoglobinemia, alpha type , MIM#617973, Thalassemias, alpha-, MIM# 604131, Hemoglobin H disease, nondeletional, MIM# 613978; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13563 HAO1 Zornitza Stark Marked gene: HAO1 as ready
Mendeliome v0.13563 HAO1 Zornitza Stark Gene: hao1 has been classified as Red List (Low Evidence).
Mendeliome v0.13563 HAO1 Zornitza Stark Classified gene: HAO1 as Red List (low evidence)
Mendeliome v0.13563 HAO1 Zornitza Stark Gene: hao1 has been classified as Red List (Low Evidence).
Mendeliome v0.13562 HAO1 Zornitza Stark reviewed gene: HAO1: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13562 HAMP Zornitza Stark Marked gene: HAMP as ready
Mendeliome v0.13562 HAMP Zornitza Stark Gene: hamp has been classified as Green List (High Evidence).
Mendeliome v0.13562 HAMP Zornitza Stark Phenotypes for gene: HAMP were changed from to Haemochromatosis, type 2B, MIM# 613313
Mendeliome v0.13561 HAMP Zornitza Stark Publications for gene: HAMP were set to
Mendeliome v0.13560 HAMP Zornitza Stark Mode of inheritance for gene: HAMP was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13559 HAMP Zornitza Stark reviewed gene: HAMP: Rating: GREEN; Mode of pathogenicity: None; Publications: 12469120, 34828384, 15198949; Phenotypes: Haemochromatosis, type 2B, MIM# 613313; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13559 HADHB Zornitza Stark Marked gene: HADHB as ready
Mendeliome v0.13559 HADHB Zornitza Stark Gene: hadhb has been classified as Green List (High Evidence).
Mendeliome v0.13559 HADHB Zornitza Stark Phenotypes for gene: HADHB were changed from to Trifunctional protein deficiency, MIM# 609015
Mendeliome v0.13558 HADHB Zornitza Stark Publications for gene: HADHB were set to
Mendeliome v0.13557 HADHB Zornitza Stark Mode of inheritance for gene: HADHB was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13556 HADHB Zornitza Stark reviewed gene: HADHB: Rating: GREEN; Mode of pathogenicity: None; Publications: 30682426, 28515471; Phenotypes: Trifunctional protein deficiency, MIM# 609015; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13556 HADHA Zornitza Stark Marked gene: HADHA as ready
Mendeliome v0.13556 HADHA Zornitza Stark Gene: hadha has been classified as Green List (High Evidence).
Mendeliome v0.13556 HADHA Zornitza Stark Phenotypes for gene: HADHA were changed from to LCHAD deficiency, MIM# 609016; MONDO:0012173
Mendeliome v0.13555 HADHA Zornitza Stark Mode of inheritance for gene: HADHA was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13554 HADHA Zornitza Stark edited their review of gene: HADHA: Changed phenotypes: LCHAD deficiency, MIM# 609016, MONDO:0012173
Mendeliome v0.13554 HADHA Zornitza Stark reviewed gene: HADHA: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: LCHAD deficiency, MIM# 609016; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13554 HADH Zornitza Stark Marked gene: HADH as ready
Mendeliome v0.13554 HADH Zornitza Stark Gene: hadh has been classified as Green List (High Evidence).
Mendeliome v0.13554 HADH Zornitza Stark Phenotypes for gene: HADH were changed from to 3-hydroxyacyl-CoA dehydrogenase deficiency, MIM# 231530; Hyperinsulinemic hypoglycemia, familial, 4, MIM# 609975
Mendeliome v0.13553 HADH Zornitza Stark Mode of inheritance for gene: HADH was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13552 HADH Zornitza Stark reviewed gene: HADH: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: 3-hydroxyacyl-CoA dehydrogenase deficiency, MIM# 231530, Hyperinsulinemic hypoglycemia, familial, 4, MIM# 609975; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13552 HACD1 Zornitza Stark Marked gene: HACD1 as ready
Mendeliome v0.13552 HACD1 Zornitza Stark Gene: hacd1 has been classified as Green List (High Evidence).
Mendeliome v0.13552 HACD1 Zornitza Stark Phenotypes for gene: HACD1 were changed from to Congenital myopathy, MONDO:0019952
Mendeliome v0.13551 HACD1 Zornitza Stark Publications for gene: HACD1 were set to
Mendeliome v0.13550 HACD1 Zornitza Stark Mode of inheritance for gene: HACD1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13549 HACD1 Zornitza Stark reviewed gene: HACD1: Rating: GREEN; Mode of pathogenicity: None; Publications: 15829503, 23933735, 32426512; Phenotypes: Congenital myopathy, MONDO:0019952; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13549 HAAO Zornitza Stark Marked gene: HAAO as ready
Mendeliome v0.13549 HAAO Zornitza Stark Gene: haao has been classified as Green List (High Evidence).
Mendeliome v0.13549 HAAO Zornitza Stark Phenotypes for gene: HAAO were changed from to Vertebral, cardiac, renal, and limb defects syndrome 1 MIM#617660; NAD deficiency
Mendeliome v0.13548 HAAO Zornitza Stark Publications for gene: HAAO were set to
Mendeliome v0.13547 HAAO Zornitza Stark Mode of inheritance for gene: HAAO was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13546 H6PD Zornitza Stark Marked gene: H6PD as ready
Mendeliome v0.13546 H6PD Zornitza Stark Gene: h6pd has been classified as Green List (High Evidence).
Mendeliome v0.13546 H6PD Zornitza Stark Phenotypes for gene: H6PD were changed from to Cortisone reductase deficiency 1, MIM# 604931
Mendeliome v0.13545 H6PD Zornitza Stark Publications for gene: H6PD were set to
Mendeliome v0.13544 H6PD Zornitza Stark Mode of inheritance for gene: H6PD was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13543 H6PD Zornitza Stark reviewed gene: H6PD: Rating: GREEN; Mode of pathogenicity: None; Publications: 18628520; Phenotypes: Cortisone reductase deficiency 1, MIM# 604931; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13543 SIK1 Samantha Ayres reviewed gene: SIK1: Rating: GREEN; Mode of pathogenicity: None; Publications: 25839329, 27966542, 35267137; Phenotypes: Developmental and epileptic encephalopathy 30, MIM#616341, developmental and epileptic encephalopathy, MONDO#0100062; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13543 BUD23 Zornitza Stark Marked gene: BUD23 as ready
Mendeliome v0.13543 BUD23 Zornitza Stark Gene: bud23 has been classified as Red List (Low Evidence).
Mendeliome v0.13543 BUD23 Zornitza Stark Classified gene: BUD23 as Red List (low evidence)
Mendeliome v0.13543 BUD23 Zornitza Stark Gene: bud23 has been classified as Red List (Low Evidence).
Mendeliome v0.13542 BUD23 Zornitza Stark reviewed gene: BUD23: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13542 BTNL2 Zornitza Stark Marked gene: BTNL2 as ready
Mendeliome v0.13542 BTNL2 Zornitza Stark Gene: btnl2 has been classified as Red List (Low Evidence).
Mendeliome v0.13542 BTNL2 Zornitza Stark Phenotypes for gene: BTNL2 were changed from to {Sarcoidosis, susceptibility to, 2} 612387
Mendeliome v0.13541 BTNL2 Zornitza Stark Mode of inheritance for gene: BTNL2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13540 BTNL2 Zornitza Stark Classified gene: BTNL2 as Red List (low evidence)
Mendeliome v0.13540 BTNL2 Zornitza Stark Gene: btnl2 has been classified as Red List (Low Evidence).
Mendeliome v0.13539 BTNL2 Zornitza Stark reviewed gene: BTNL2: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: {Sarcoidosis, susceptibility to, 2} 612387; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13539 BTK Zornitza Stark Marked gene: BTK as ready
Mendeliome v0.13539 BTK Zornitza Stark Gene: btk has been classified as Green List (High Evidence).
Mendeliome v0.13539 BTK Zornitza Stark Phenotypes for gene: BTK were changed from to Agammaglobulinaemia, X-linked 1, MIM# 300755; Isolated growth hormone deficiency, type III, with agammaglobulinaemia, MIM# 307200
Mendeliome v0.13538 BTK Zornitza Stark Publications for gene: BTK were set to
Mendeliome v0.13537 BTK Zornitza Stark Mode of inheritance for gene: BTK was changed from Unknown to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.13536 BTK Zornitza Stark commented on gene: BTK: Well established gene-disease association with agammaglobulinaemia, >100 families reported.

At least 3 families reported with GH deficiency plus agammaglobulinaemia.
Mendeliome v0.13536 BTK Zornitza Stark reviewed gene: BTK: Rating: GREEN; Mode of pathogenicity: None; Publications: 8013627, 7849697; Phenotypes: Agammaglobulinaemia, X-linked 1, MIM# 300755, Isolated growth hormone deficiency, type III, with agammaglobulinaemia, MIM# 307200; Mode of inheritance: X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.13536 BRIP1 Zornitza Stark Marked gene: BRIP1 as ready
Mendeliome v0.13536 BRIP1 Zornitza Stark Gene: brip1 has been classified as Green List (High Evidence).
Mendeliome v0.13536 BRIP1 Zornitza Stark Phenotypes for gene: BRIP1 were changed from to Fanconi anaemia, complementation group J, MIM# 609054
Mendeliome v0.13535 BRIP1 Zornitza Stark Publications for gene: BRIP1 were set to
Mendeliome v0.13534 BRIP1 Zornitza Stark Mode of inheritance for gene: BRIP1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13533 BRIP1 Zornitza Stark reviewed gene: BRIP1: Rating: GREEN; Mode of pathogenicity: None; Publications: 27107905; Phenotypes: Fanconi anaemia, complementation group J, MIM# 609054; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13533 BRAF Zornitza Stark Marked gene: BRAF as ready
Mendeliome v0.13533 BRAF Zornitza Stark Gene: braf has been classified as Green List (High Evidence).
Mendeliome v0.13533 BRAF Zornitza Stark Phenotypes for gene: BRAF were changed from to Noonan syndrome 7, MIM# 613706; Cardiofaciocutaneous syndrome, MIM# 115150
Mendeliome v0.13532 BRAF Zornitza Stark Publications for gene: BRAF were set to
Mendeliome v0.13531 BRAF Zornitza Stark Mode of pathogenicity for gene: BRAF was changed from to Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments
Mendeliome v0.13530 BRAF Zornitza Stark Mode of inheritance for gene: BRAF was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13529 BRAF Zornitza Stark reviewed gene: BRAF: Rating: GREEN; Mode of pathogenicity: Loss-of-function variants (as defined in pop up message) DO NOT cause this phenotype - please provide details in the comments; Publications: 19206169, 18042262; Phenotypes: Noonan syndrome 7, MIM# 613706, Cardiofaciocutaneous syndrome, MIM# 115150; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13529 BPGM Zornitza Stark Marked gene: BPGM as ready
Mendeliome v0.13529 BPGM Zornitza Stark Gene: bpgm has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13529 BPGM Zornitza Stark Phenotypes for gene: BPGM were changed from to Erythrocytosis, familial, 8, MIM# 222800
Mendeliome v0.13528 BPGM Zornitza Stark Publications for gene: BPGM were set to
Mendeliome v0.13527 BPGM Zornitza Stark Mode of inheritance for gene: BPGM was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13526 BPGM Zornitza Stark Classified gene: BPGM as Amber List (moderate evidence)
Mendeliome v0.13526 BPGM Zornitza Stark Gene: bpgm has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13525 BPGM Zornitza Stark reviewed gene: BPGM: Rating: AMBER; Mode of pathogenicity: None; Publications: 1421379, 27651169, 25015942; Phenotypes: Erythrocytosis, familial, 8, MIM# 222800; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13525 BMPR1A Zornitza Stark Marked gene: BMPR1A as ready
Mendeliome v0.13525 BMPR1A Zornitza Stark Gene: bmpr1a has been classified as Green List (High Evidence).
Mendeliome v0.13525 BMPR1A Zornitza Stark Phenotypes for gene: BMPR1A were changed from to Polyposis, juvenile intestinal, MIM# 174900
Mendeliome v0.13524 BMPR1A Zornitza Stark Publications for gene: BMPR1A were set to
Mendeliome v0.13523 BMPR1A Zornitza Stark Mode of inheritance for gene: BMPR1A was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13522 BMPR1A Zornitza Stark reviewed gene: BMPR1A: Rating: GREEN; Mode of pathogenicity: None; Publications: 11381269; Phenotypes: Polyposis, juvenile intestinal, MIM# 174900; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13522 BLVRA Zornitza Stark Marked gene: BLVRA as ready
Mendeliome v0.13522 BLVRA Zornitza Stark Gene: blvra has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13522 BLVRA Zornitza Stark Phenotypes for gene: BLVRA were changed from to Hyperbiliverdinaemia , MIM#614156
Mendeliome v0.13521 BLVRA Zornitza Stark Publications for gene: BLVRA were set to
Mendeliome v0.13520 BLVRA Zornitza Stark Mode of inheritance for gene: BLVRA was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13519 BLVRA Zornitza Stark Classified gene: BLVRA as Amber List (moderate evidence)
Mendeliome v0.13519 BLVRA Zornitza Stark Gene: blvra has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13518 BLVRA Zornitza Stark reviewed gene: BLVRA: Rating: AMBER; Mode of pathogenicity: None; Publications: 19580635, 21278388; Phenotypes: Hyperbiliverdinaemia , MIM#614156; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13518 BLK Zornitza Stark Marked gene: BLK as ready
Mendeliome v0.13518 BLK Zornitza Stark Gene: blk has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13518 BLK Zornitza Stark Phenotypes for gene: BLK were changed from to Common variable immunodeficiency, MONDO:0015517
Mendeliome v0.13517 BLK Zornitza Stark Publications for gene: BLK were set to
Mendeliome v0.13516 BLK Zornitza Stark Mode of inheritance for gene: BLK was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13515 BLK Zornitza Stark Classified gene: BLK as Amber List (moderate evidence)
Mendeliome v0.13515 BLK Zornitza Stark Gene: blk has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13514 BLK Zornitza Stark reviewed gene: BLK: Rating: AMBER; Mode of pathogenicity: None; Publications: 25926555; Phenotypes: Common variable immunodeficiency, MONDO:0015517; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13514 BHLHE41 Zornitza Stark Marked gene: BHLHE41 as ready
Mendeliome v0.13514 BHLHE41 Zornitza Stark Gene: bhlhe41 has been classified as Red List (Low Evidence).
Mendeliome v0.13514 BHLHE41 Zornitza Stark Phenotypes for gene: BHLHE41 were changed from to [Short sleep, familial natural, 1] 612975
Mendeliome v0.13513 BHLHE41 Zornitza Stark Mode of inheritance for gene: BHLHE41 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13512 BHLHE41 Zornitza Stark Classified gene: BHLHE41 as Red List (low evidence)
Mendeliome v0.13512 BHLHE41 Zornitza Stark Gene: bhlhe41 has been classified as Red List (Low Evidence).
Mendeliome v0.13511 BHLHE41 Zornitza Stark reviewed gene: BHLHE41: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: [Short sleep, familial natural, 1] 612975; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13511 BFSP1 Zornitza Stark Marked gene: BFSP1 as ready
Mendeliome v0.13511 BFSP1 Zornitza Stark Gene: bfsp1 has been classified as Green List (High Evidence).
Mendeliome v0.13511 BFSP1 Zornitza Stark Phenotypes for gene: BFSP1 were changed from to Cataract 33, multiple types, MIM# 611391
Cataract v0.330 BFSP1 Zornitza Stark Marked gene: BFSP1 as ready
Cataract v0.330 BFSP1 Zornitza Stark Gene: bfsp1 has been classified as Green List (High Evidence).
Cataract v0.330 BFSP1 Zornitza Stark Phenotypes for gene: BFSP1 were changed from to Cataract 33, multiple types, MIM# 611391
Cataract v0.329 BFSP1 Zornitza Stark Publications for gene: BFSP1 were set to
Cataract v0.328 BFSP1 Zornitza Stark Mode of inheritance for gene: BFSP1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Cataract v0.327 BFSP1 Zornitza Stark reviewed gene: BFSP1: Rating: GREEN; Mode of pathogenicity: None; Publications: 17225135, 26694549, 24379646, 28450710, 31842807, 26694549; Phenotypes: Cataract 33, multiple types, MIM# 611391; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13510 BFSP1 Zornitza Stark Publications for gene: BFSP1 were set to
Mendeliome v0.13509 BFSP1 Zornitza Stark Mode of inheritance for gene: BFSP1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13508 BFSP1 Zornitza Stark reviewed gene: BFSP1: Rating: GREEN; Mode of pathogenicity: None; Publications: 17225135, 26694549, 24379646, 28450710, 31842807, 26694549; Phenotypes: Cataract 33, multiple types, MIM# 611391; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13508 BCL2 Zornitza Stark Marked gene: BCL2 as ready
Mendeliome v0.13508 BCL2 Zornitza Stark Gene: bcl2 has been classified as Red List (Low Evidence).
Mendeliome v0.13508 BCL2 Zornitza Stark Classified gene: BCL2 as Red List (low evidence)
Mendeliome v0.13508 BCL2 Zornitza Stark Gene: bcl2 has been classified as Red List (Low Evidence).
Mendeliome v0.13507 BCL2 Zornitza Stark reviewed gene: BCL2: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13507 BCKDK Zornitza Stark Marked gene: BCKDK as ready
Mendeliome v0.13507 BCKDK Zornitza Stark Gene: bckdk has been classified as Green List (High Evidence).
Mendeliome v0.13507 BCKDK Zornitza Stark Phenotypes for gene: BCKDK were changed from to Branched-chain ketoacid dehydrogenase kinase deficiency MIM#614923; disorder of branched-chain amino acid metabolism
Mendeliome v0.13506 BCKDK Zornitza Stark Publications for gene: BCKDK were set to
Mendeliome v0.13505 BCKDK Zornitza Stark Mode of inheritance for gene: BCKDK was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13504 BCL10 Zornitza Stark Marked gene: BCL10 as ready
Mendeliome v0.13504 BCL10 Zornitza Stark Gene: bcl10 has been classified as Green List (High Evidence).
Mendeliome v0.13504 BCL10 Zornitza Stark Phenotypes for gene: BCL10 were changed from to Immunodeficiency 37, MIM# 616098
Mendeliome v0.13503 BCL10 Zornitza Stark Publications for gene: BCL10 were set to
Mendeliome v0.13502 BCL10 Zornitza Stark Mode of inheritance for gene: BCL10 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13501 BCHE Zornitza Stark Marked gene: BCHE as ready
Mendeliome v0.13501 BCHE Zornitza Stark Gene: bche has been classified as Green List (High Evidence).
Mendeliome v0.13501 BCHE Zornitza Stark Phenotypes for gene: BCHE were changed from to Butyrylcholinesterase deficiency, MIM# 617936
Mendeliome v0.13500 BCHE Zornitza Stark Mode of inheritance for gene: BCHE was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13499 BCHE Zornitza Stark reviewed gene: BCHE: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Butyrylcholinesterase deficiency, MIM# 617936; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13499 BBS2 Zornitza Stark Marked gene: BBS2 as ready
Mendeliome v0.13499 BBS2 Zornitza Stark Gene: bbs2 has been classified as Green List (High Evidence).
Mendeliome v0.13499 BBS2 Zornitza Stark Phenotypes for gene: BBS2 were changed from to Bardet-Biedl syndrome 2, MIM# 615981; Retinitis pigmentosa 74, MIM# 616562
Mendeliome v0.13498 BBS2 Zornitza Stark Publications for gene: BBS2 were set to
Mendeliome v0.13497 BBS2 Zornitza Stark Mode of inheritance for gene: BBS2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13496 BBS12 Zornitza Stark Marked gene: BBS12 as ready
Mendeliome v0.13496 BBS12 Zornitza Stark Gene: bbs12 has been classified as Green List (High Evidence).
Mendeliome v0.13496 BBS12 Zornitza Stark Phenotypes for gene: BBS12 were changed from to Bardet-Biedl syndrome 12, MIM# 615989
Mendeliome v0.13495 BBS12 Zornitza Stark Publications for gene: BBS12 were set to
Mendeliome v0.13494 BBS12 Zornitza Stark Mode of inheritance for gene: BBS12 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13493 BBS10 Zornitza Stark Marked gene: BBS10 as ready
Mendeliome v0.13493 BBS10 Zornitza Stark Gene: bbs10 has been classified as Green List (High Evidence).
Mendeliome v0.13493 BBS10 Zornitza Stark Phenotypes for gene: BBS10 were changed from to Bardet-Biedl syndrome 10, MIM# 615987
Mendeliome v0.13492 BBS10 Zornitza Stark Publications for gene: BBS10 were set to
Mendeliome v0.13491 BBS10 Zornitza Stark Mode of inheritance for gene: BBS10 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13490 BBS1 Zornitza Stark Marked gene: BBS1 as ready
Mendeliome v0.13490 BBS1 Zornitza Stark Gene: bbs1 has been classified as Green List (High Evidence).
Mendeliome v0.13490 BBS1 Zornitza Stark Phenotypes for gene: BBS1 were changed from to Bardet-Biedl syndrome 1, MIM# 209900
Mendeliome v0.13489 BBS1 Zornitza Stark Publications for gene: BBS1 were set to
Mendeliome v0.13488 BBS1 Zornitza Stark Mode of inheritance for gene: BBS1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13487 BAG3 Zornitza Stark Marked gene: BAG3 as ready
Mendeliome v0.13487 BAG3 Zornitza Stark Gene: bag3 has been classified as Green List (High Evidence).
Mendeliome v0.13487 BAG3 Zornitza Stark Phenotypes for gene: BAG3 were changed from to Cardiomyopathy, dilated, 1HH, MIM# 613881; Myopathy, myofibrillar, 6, MIM# 612954
Mendeliome v0.13486 BAG3 Zornitza Stark Publications for gene: BAG3 were set to
Mendeliome v0.13485 BAG3 Zornitza Stark Mode of inheritance for gene: BAG3 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13484 BAG3 Zornitza Stark reviewed gene: BAG3: Rating: GREEN; Mode of pathogenicity: None; Publications: 21353195, 25008357, 25448463, 24623017, 27391596, 28211974, 30442290, 31983221, 28737513, 29323723, 33947203, 25208129, 32453099, 22734908; Phenotypes: Cardiomyopathy, dilated, 1HH, MIM# 613881, Myopathy, myofibrillar, 6, MIM# 612954; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13484 BACH2 Zornitza Stark Deleted their comment
Mendeliome v0.13484 BACH2 Zornitza Stark commented on gene: BACH2: Two families and a mouse model.
Mendeliome v0.13484 BACH2 Zornitza Stark Marked gene: BACH2 as ready
Mendeliome v0.13484 BACH2 Zornitza Stark Gene: bach2 has been classified as Green List (High Evidence).
Mendeliome v0.13484 BACH2 Zornitza Stark Phenotypes for gene: BACH2 were changed from to Immunodeficiency 60 and autoimmunity, MIM# 618394
Mendeliome v0.13483 BACH2 Zornitza Stark Publications for gene: BACH2 were set to
Mendeliome v0.13482 BACH2 Zornitza Stark Mode of inheritance for gene: BACH2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13481 BACH2 Zornitza Stark reviewed gene: BACH2: Rating: GREEN; Mode of pathogenicity: None; Publications: 28530713; Phenotypes: Immunodeficiency 60 and autoimmunity, MIM# 618394; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13481 B4GALT1 Zornitza Stark Marked gene: B4GALT1 as ready
Mendeliome v0.13481 B4GALT1 Zornitza Stark Gene: b4galt1 has been classified as Green List (High Evidence).
Mendeliome v0.13481 B4GALT1 Zornitza Stark Phenotypes for gene: B4GALT1 were changed from to Congenital disorder of glycosylation, type Iid, MIM#607091
Mendeliome v0.13480 B4GALT1 Zornitza Stark Publications for gene: B4GALT1 were set to
Mendeliome v0.13479 B4GALT1 Zornitza Stark Mode of inheritance for gene: B4GALT1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13478 B4GALT1 Zornitza Stark changed review comment from: Intellectual disability is part of CDG, although non-neurological forms of this CDG have been described.
Sources: Expert list; to: At least 3 unrelated families.
Sources: Expert list
Mendeliome v0.13478 B4GALNT1 Zornitza Stark Marked gene: B4GALNT1 as ready
Mendeliome v0.13478 B4GALNT1 Zornitza Stark Gene: b4galnt1 has been classified as Green List (High Evidence).
Mendeliome v0.13478 B4GALNT1 Zornitza Stark Phenotypes for gene: B4GALNT1 were changed from to Spastic paraplegia 26, autosomal recessive (MIM #609195)
Mendeliome v0.13477 B4GALNT1 Zornitza Stark Publications for gene: B4GALNT1 were set to 23746551 24103911
Mendeliome v0.13476 B4GALNT1 Zornitza Stark Publications for gene: B4GALNT1 were set to
Mendeliome v0.13475 B4GALNT1 Zornitza Stark Mode of inheritance for gene: B4GALNT1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13474 B4GALNT1 Zornitza Stark reviewed gene: B4GALNT1: Rating: GREEN; Mode of pathogenicity: None; Publications: 23746551 24103911; Phenotypes: Spastic paraplegia 26, autosomal recessive (MIM #609195); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13474 B3GLCT Zornitza Stark Marked gene: B3GLCT as ready
Mendeliome v0.13474 B3GLCT Zornitza Stark Gene: b3glct has been classified as Green List (High Evidence).
Mendeliome v0.13474 B3GLCT Zornitza Stark Phenotypes for gene: B3GLCT were changed from to Peters-plus syndrome, MIM#261540
Mendeliome v0.13473 B3GLCT Zornitza Stark Publications for gene: B3GLCT were set to
Mendeliome v0.13472 B3GLCT Zornitza Stark Mode of inheritance for gene: B3GLCT was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13471 B3GLCT Zornitza Stark reviewed gene: B3GLCT: Rating: GREEN; Mode of pathogenicity: None; Publications: 18798333, 19796186, 32533185, 32204707, 31795264; Phenotypes: Peters-plus syndrome, MIM#261540; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13471 APOA5 Zornitza Stark Marked gene: APOA5 as ready
Mendeliome v0.13471 APOA5 Zornitza Stark Gene: apoa5 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4710 AP1S2 Zornitza Stark Marked gene: AP1S2 as ready
Intellectual disability syndromic and non-syndromic v0.4710 AP1S2 Zornitza Stark Gene: ap1s2 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4710 AP1S2 Zornitza Stark Phenotypes for gene: AP1S2 were changed from to Pettigrew syndrome, MIM# 304340
Intellectual disability syndromic and non-syndromic v0.4709 AP1S2 Zornitza Stark Publications for gene: AP1S2 were set to
Intellectual disability syndromic and non-syndromic v0.4708 AP1S2 Zornitza Stark Mode of inheritance for gene: AP1S2 was changed from Unknown to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Intellectual disability syndromic and non-syndromic v0.4707 AP1S2 Zornitza Stark reviewed gene: AP1S2: Rating: GREEN; Mode of pathogenicity: None; Publications: 17186471, 17617514, 19377476, 30714330, 23756445; Phenotypes: Pettigrew syndrome, MIM# 304340; Mode of inheritance: X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.13471 AP1S2 Zornitza Stark Phenotypes for gene: AP1S2 were changed from Mental retardation, X-linked syndromic 5, MIM#304340 to Pettigrew syndrome, MIM# 304340
Mendeliome v0.13470 AP1S2 Zornitza Stark Publications for gene: AP1S2 were set to
Mendeliome v0.13469 AP1S2 Zornitza Stark reviewed gene: AP1S2: Rating: GREEN; Mode of pathogenicity: None; Publications: 17186471, 17617514, 19377476, 30714330, 23756445; Phenotypes: Pettigrew syndrome, MIM# 304340; Mode of inheritance: X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.13469 APCDD1 Zornitza Stark Marked gene: APCDD1 as ready
Mendeliome v0.13469 APCDD1 Zornitza Stark Gene: apcdd1 has been classified as Green List (High Evidence).
Mendeliome v0.13469 APCDD1 Zornitza Stark Phenotypes for gene: APCDD1 were changed from to Hypotrichosis 1, MIM#605389
Mendeliome v0.13468 APCDD1 Zornitza Stark Publications for gene: APCDD1 were set to
Mendeliome v0.13467 APCDD1 Zornitza Stark Mode of inheritance for gene: APCDD1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13466 APCDD1 Zornitza Stark reviewed gene: APCDD1: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Hypotrichosis 1, MIM#605389; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13466 ANO10 Zornitza Stark Phenotypes for gene: ANO10 were changed from Spinocerebellar ataxia, autosomal recessive 10 MIM#613728 to Spinocerebellar ataxia, autosomal recessive 10, MIM#613728
Mendeliome v0.13465 ANO10 Zornitza Stark Publications for gene: ANO10 were set to
Mendeliome v0.13464 ANO10 Zornitza Stark reviewed gene: ANO10: Rating: GREEN; Mode of pathogenicity: None; Publications: 21092923, 25182700; Phenotypes: Spinocerebellar ataxia, autosomal recessive 10, MIM#613728; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13464 PHOX2B Zornitza Stark Marked gene: PHOX2B as ready
Mendeliome v0.13464 PHOX2B Zornitza Stark Gene: phox2b has been classified as Green List (High Evidence).
Mendeliome v0.13464 PHOX2B Zornitza Stark Phenotypes for gene: PHOX2B were changed from to Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease - MIM#209880; Neuroblastoma with Hirschsprung disease - MIM#613013
Mendeliome v0.13463 PHOX2B Zornitza Stark Publications for gene: PHOX2B were set to
Mendeliome v0.13462 PHOX2B Zornitza Stark Mode of inheritance for gene: PHOX2B was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13461 PEX26 Zornitza Stark Marked gene: PEX26 as ready
Mendeliome v0.13461 PEX26 Zornitza Stark Gene: pex26 has been classified as Green List (High Evidence).
Mendeliome v0.13461 PEX26 Zornitza Stark Phenotypes for gene: PEX26 were changed from to Peroxisome biogenesis disorder 7A (Zellweger) - MIM#614872; Peroxisome biogenesis disorder 7B - MIM#614873
Mendeliome v0.13460 PEX26 Zornitza Stark Publications for gene: PEX26 were set to
Mendeliome v0.13459 PEX26 Zornitza Stark Mode of inheritance for gene: PEX26 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13458 PEX2 Zornitza Stark Marked gene: PEX2 as ready
Mendeliome v0.13458 PEX2 Zornitza Stark Gene: pex2 has been classified as Green List (High Evidence).
Mendeliome v0.13458 PEX2 Zornitza Stark Phenotypes for gene: PEX2 were changed from to Peroxisome biogenesis disorder 5A (Zellweger) - MIM#614866; Peroxisome biogenesis disorder 5B - MIM#614867
Mendeliome v0.13457 PEX2 Zornitza Stark Publications for gene: PEX2 were set to
Mendeliome v0.13456 PEX2 Zornitza Stark Mode of inheritance for gene: PEX2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13455 PEX19 Zornitza Stark Marked gene: PEX19 as ready
Mendeliome v0.13455 PEX19 Zornitza Stark Gene: pex19 has been classified as Green List (High Evidence).
Mendeliome v0.13455 PEX19 Zornitza Stark Phenotypes for gene: PEX19 were changed from to Peroxisome biogenesis disorder 12A (Zellweger) - MIM#614886
Mendeliome v0.13454 PEX16 Zornitza Stark Marked gene: PEX16 as ready
Mendeliome v0.13454 PEX16 Zornitza Stark Gene: pex16 has been classified as Green List (High Evidence).
Mendeliome v0.13454 PEX16 Zornitza Stark Phenotypes for gene: PEX16 were changed from to Peroxisome biogenesis disorder 8A (Zellweger) - MIM#614876; Peroxisome biogenesis disorder 8B - MIM#614877
Mendeliome v0.13453 PEX16 Zornitza Stark Publications for gene: PEX16 were set to
Mendeliome v0.13452 PEX16 Zornitza Stark Mode of inheritance for gene: PEX16 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13451 PEX14 Zornitza Stark Marked gene: PEX14 as ready
Mendeliome v0.13451 PEX14 Zornitza Stark Gene: pex14 has been classified as Green List (High Evidence).
Mendeliome v0.13451 PEX14 Zornitza Stark Phenotypes for gene: PEX14 were changed from to Peroxisome biogenesis disorder 13A (Zellweger) - MIM#614887
Mendeliome v0.13450 PEX14 Zornitza Stark Publications for gene: PEX14 were set to
Mendeliome v0.13449 PEX14 Zornitza Stark Mode of inheritance for gene: PEX14 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13448 PEX13 Zornitza Stark Marked gene: PEX13 as ready
Mendeliome v0.13448 PEX13 Zornitza Stark Gene: pex13 has been classified as Green List (High Evidence).
Mendeliome v0.13448 PEX13 Zornitza Stark Phenotypes for gene: PEX13 were changed from to Peroxisome biogenesis disorder 11A (Zellweger) - MIM#614883; Peroxisome biogenesis disorder 11B - MIM#614885
Mendeliome v0.13447 PEX13 Zornitza Stark Mode of inheritance for gene: PEX13 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13446 PEX12 Zornitza Stark Marked gene: PEX12 as ready
Mendeliome v0.13446 PEX12 Zornitza Stark Gene: pex12 has been classified as Green List (High Evidence).
Mendeliome v0.13446 PEX12 Zornitza Stark Phenotypes for gene: PEX12 were changed from to Peroxisome biogenesis disorder 3A (Zellweger) - MIM#614859; Peroxisome biogenesis disorder 3B - MIM#266510
Mendeliome v0.13445 PEX12 Zornitza Stark Mode of inheritance for gene: PEX12 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Ataxia - adult onset v0.163 PRKCG Zornitza Stark Marked gene: PRKCG as ready
Ataxia - adult onset v0.163 PRKCG Zornitza Stark Gene: prkcg has been classified as Green List (High Evidence).
Ataxia - adult onset v0.163 PRKCG Zornitza Stark Phenotypes for gene: PRKCG were changed from Spinocerebellar ataxia 14; Spincocerebellar ataxia 14, 605361 to Spinocerebellar ataxia 14 MIM#605361
Ataxia - adult onset v0.162 PRKCG Zornitza Stark Publications for gene: PRKCG were set to
Ataxia - adult onset v0.161 PRKCG Zornitza Stark Mode of pathogenicity for gene: PRKCG was changed from to Other
Ataxia - adult onset v0.160 PRKCG Zornitza Stark Mode of inheritance for gene: PRKCG was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13444 ENTPD1 Zornitza Stark Publications for gene: ENTPD1 were set to 24482476; 30652007
Mendeliome v0.13443 ENTPD1 Zornitza Stark commented on gene: ENTPD1: PMID 35471564: 27 individuals from 17 families published, expanding the phenotype to a complex neurodevelopmental disorder characterised by ID, white matter abnormalities and spastic paraplegia.
Mendeliome v0.13443 ENTPD1 Zornitza Stark edited their review of gene: ENTPD1: Changed publications: 24482476, 30652007, 35471564
Leukodystrophy - paediatric v0.263 ENTPD1 Zornitza Stark Marked gene: ENTPD1 as ready
Leukodystrophy - paediatric v0.263 ENTPD1 Zornitza Stark Gene: entpd1 has been classified as Green List (High Evidence).
Leukodystrophy - paediatric v0.263 ENTPD1 Zornitza Stark Classified gene: ENTPD1 as Green List (high evidence)
Leukodystrophy - paediatric v0.263 ENTPD1 Zornitza Stark Gene: entpd1 has been classified as Green List (High Evidence).
Leukodystrophy - paediatric v0.262 ENTPD1 Zornitza Stark gene: ENTPD1 was added
gene: ENTPD1 was added to Leukodystrophy - paediatric. Sources: Literature
Mode of inheritance for gene: ENTPD1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: ENTPD1 were set to 35471564
Phenotypes for gene: ENTPD1 were set to Spastic paraplegia 64, autosomal recessive, MIM# 615683
Review for gene: ENTPD1 was set to GREEN
Added comment: 27 individuals from 17 families published, expanding the phenotype to a complex neurodevelopmental disorder characterised by ID, white matter abnormalities and spastic paraplegia.
Sources: Literature
Intellectual disability syndromic and non-syndromic v0.4707 ENTPD1 Zornitza Stark Marked gene: ENTPD1 as ready
Intellectual disability syndromic and non-syndromic v0.4707 ENTPD1 Zornitza Stark Gene: entpd1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4707 ENTPD1 Zornitza Stark Classified gene: ENTPD1 as Green List (high evidence)
Intellectual disability syndromic and non-syndromic v0.4707 ENTPD1 Zornitza Stark Gene: entpd1 has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4706 ENTPD1 Zornitza Stark gene: ENTPD1 was added
gene: ENTPD1 was added to Intellectual disability syndromic and non-syndromic. Sources: Literature
Mode of inheritance for gene: ENTPD1 was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: ENTPD1 were set to 35471564
Phenotypes for gene: ENTPD1 were set to Spastic paraplegia 64, autosomal recessive, MIM# 615683
Review for gene: ENTPD1 was set to GREEN
Added comment: 27 individuals from 17 families published, expanding the phenotype to a complex neurodevelopmental disorder characterised by ID, white matter abnormalities and spastic paraplegia.
Sources: Literature
Hereditary Spastic Paraplegia - paediatric v1.26 ENTPD1 Zornitza Stark Publications for gene: ENTPD1 were set to 24482476; 30652007
Mendeliome v0.13443 RSPH1 Zornitza Stark Marked gene: RSPH1 as ready
Mendeliome v0.13443 RSPH1 Zornitza Stark Gene: rsph1 has been classified as Green List (High Evidence).
Mendeliome v0.13443 RSPH1 Zornitza Stark Phenotypes for gene: RSPH1 were changed from to Ciliary dyskinesia, primary, 24 MIM#615481
Mendeliome v0.13442 RSPH1 Zornitza Stark Publications for gene: RSPH1 were set to
Mendeliome v0.13441 RSPH1 Zornitza Stark Mode of inheritance for gene: RSPH1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 CNGB1 Zornitza Stark Marked gene: CNGB1 as ready
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 CNGB1 Zornitza Stark Gene: cngb1 has been classified as Green List (High Evidence).
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.124 CNGB1 Zornitza Stark Phenotypes for gene: CNGB1 were changed from Retinitis pigmentosa 45, 613767 to Retinitis pigmentosa 45, MIM#613767
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.123 CNGB1 Zornitza Stark Publications for gene: CNGB1 were set to
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.122 CNGB1 Zornitza Stark reviewed gene: CNGB1: Rating: GREEN; Mode of pathogenicity: None; Publications: 11379879, 15557452, 23661369, 33847019; Phenotypes: Retinitis pigmentosa 45 MIM#613767; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.122 CNGA1 Zornitza Stark Marked gene: CNGA1 as ready
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.122 CNGA1 Zornitza Stark Gene: cnga1 has been classified as Green List (High Evidence).
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.122 CNGA1 Zornitza Stark Mode of inheritance for gene: CNGA1 was changed from BOTH monoallelic and biallelic, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.121 CNGA1 Zornitza Stark Publications for gene: CNGA1 were set to
Retinitis pigmentosa_Autosomal Recessive/X-linked v0.120 CNGA1 Zornitza Stark reviewed gene: CNGA1: Rating: GREEN; Mode of pathogenicity: None; Publications: 33633220, 32705276, 30652268, 20301590, 7479749; Phenotypes: Retinitis pigmentosa 49 MIM#613756; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13440 CLEC7A Zornitza Stark Mode of inheritance for gene: CLEC7A was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13439 APOA5 Elena Savva Mode of inheritance for gene: APOA5 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13438 APOA5 Elena Savva Phenotypes for gene: APOA5 were changed from to Hyperchylomicronemia, late-onset MIM#144650; {Hypertriglyceridemia, susceptibility to} MIM#145750
Mendeliome v0.13438 APOA5 Elena Savva Publications for gene: APOA5 were set to PMID: 19447388; 16200213; 11588264
Mendeliome v0.13438 APOA5 Elena Savva Publications for gene: APOA5 were set to
Mendeliome v0.13438 APOA5 Elena Savva Mode of inheritance for gene: APOA5 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13437 APOA5 Elena Savva reviewed gene: APOA5: Rating: GREEN; Mode of pathogenicity: None; Publications: PMID: 19447388, 16200213, 11588264; Phenotypes: Hyperchylomicronemia, late-onset MIM#144650, {Hypertriglyceridemia, susceptibility to} MIM#145750; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Vasculitis v0.62 APOA2 Elena Savva Marked gene: APOA2 as ready
Vasculitis v0.62 APOA2 Elena Savva Gene: apoa2 has been classified as Red List (Low Evidence).
Mendeliome v0.13437 APOA2 Elena Savva Marked gene: APOA2 as ready
Mendeliome v0.13437 APOA2 Elena Savva Gene: apoa2 has been classified as Red List (Low Evidence).
Vasculitis v0.62 APOA2 Elena Savva Phenotypes for gene: APOA2 were changed from Apolipoprotein A-II deficiency; {Hypercholesterolemia, familial, modifier of} MIM#143890 to Apolipoprotein A-II deficiency; {Hypercholesterolemia, familial, modifier of} MIM#143890
Vasculitis v0.62 APOA2 Elena Savva Publications for gene: APOA2 were set to PMID: 12522687; 2107739; 25904114
Vasculitis v0.62 APOA2 Elena Savva Mode of inheritance for gene: APOA2 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Vasculitis v0.62 APOA2 Elena Savva Classified gene: APOA2 as Red List (low evidence)
Vasculitis v0.62 APOA2 Elena Savva Gene: apoa2 has been classified as Red List (Low Evidence).
Vasculitis v0.61 APOA2 Elena Savva Phenotypes for gene: APOA2 were changed from to Apolipoprotein A-II deficiency; {Hypercholesterolemia, familial, modifier of} MIM#143890
Vasculitis v0.61 APOA2 Elena Savva Publications for gene: APOA2 were set to
Vasculitis v0.61 APOA2 Elena Savva Mode of inheritance for gene: APOA2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Vasculitis v0.61 APOA2 Elena Savva Classified gene: APOA2 as Red List (low evidence)
Vasculitis v0.61 APOA2 Elena Savva Gene: apoa2 has been classified as Red List (Low Evidence).
Mendeliome v0.13437 APOA2 Elena Savva Phenotypes for gene: APOA2 were changed from to Apolipoprotein A-II deficiency; {Hypercholesterolemia, familial, modifier of} MIM#143890
Mendeliome v0.13437 APOA2 Elena Savva Publications for gene: APOA2 were set to
Mendeliome v0.13436 APOA2 Elena Savva Mode of inheritance for gene: APOA2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13436 APOA2 Elena Savva Classified gene: APOA2 as Red List (low evidence)
Mendeliome v0.13436 APOA2 Elena Savva Gene: apoa2 has been classified as Red List (Low Evidence).
Vasculitis v0.60 APOA2 Elena Savva reviewed gene: APOA2: Rating: RED; Mode of pathogenicity: None; Publications: PMID: 12522687, 2107739, 25904114; Phenotypes: Apolipoprotein A-II deficiency, {Hypercholesterolemia, familial, modifier of} MIM#143890; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13435 APOA2 Elena Savva reviewed gene: APOA2: Rating: RED; Mode of pathogenicity: None; Publications: PMID: 12522687, 2107739, 25904114; Phenotypes: Apolipoprotein A-II deficiency, {Hypercholesterolemia, familial, modifier of} MIM#143890; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13435 APOA1 Elena Savva Marked gene: APOA1 as ready
Mendeliome v0.13435 APOA1 Elena Savva Gene: apoa1 has been classified as Green List (High Evidence).
Mendeliome v0.13435 APOA1 Elena Savva Phenotypes for gene: APOA1 were changed from to Amyloidosis, 3 or more types MIM#105200; Hypoalphalipoproteinemia, primary, 2 MIM#618463; Hypoalphalipoproteinemia, primary, 2, intermediate MIM#619836
Mendeliome v0.13435 APOA1 Elena Savva Mode of inheritance for gene: APOA1 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13434 APOA1 Elena Savva reviewed gene: APOA1: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Amyloidosis, 3 or more types MIM#105200, Hypoalphalipoproteinemia, primary, 2 MIM#618463, Hypoalphalipoproteinemia, primary, 2, intermediate MIM#619836; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13434 AP1S2 Elena Savva Marked gene: AP1S2 as ready
Mendeliome v0.13434 AP1S2 Elena Savva Gene: ap1s2 has been classified as Green List (High Evidence).
Mendeliome v0.13434 AP1S2 Elena Savva Phenotypes for gene: AP1S2 were changed from to Mental retardation, X-linked syndromic 5, MIM#304340
Mendeliome v0.13433 AP1S2 Elena Savva Mode of inheritance for gene: AP1S2 was changed from Unknown to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Hair disorders v0.61 APCDD1 Elena Savva reviewed gene: APCDD1: Rating: AMBER; Mode of pathogenicity: None; Publications: PMID: 22512811; Phenotypes: Hypotrichosis 1 MIM#605389; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13432 APCDD1 Elena Savva reviewed gene: APCDD1: Rating: AMBER; Mode of pathogenicity: None; Publications: PMID: 22512811; Phenotypes: Hypotrichosis 1 MIM#605389; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Mendeliome v0.13432 ANO10 Elena Savva Phenotypes for gene: ANO10 were changed from Spinocerebellar ataxia, autosomal recessive 10 MIM#613728 to Spinocerebellar ataxia, autosomal recessive 10 MIM#613728
Mendeliome v0.13431 ANO10 Elena Savva Mode of pathogenicity for gene: ANO10 was changed from to None
Mendeliome v0.13430 ANO10 Elena Savva Phenotypes for gene: ANO10 were changed from to Spinocerebellar ataxia, autosomal recessive 10 MIM#613728
Mendeliome v0.13430 ANO10 Elena Savva Marked gene: ANO10 as ready
Mendeliome v0.13430 ANO10 Elena Savva Gene: ano10 has been classified as Green List (High Evidence).
Mendeliome v0.13430 ANO10 Elena Savva Mode of inheritance for gene: ANO10 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13429 PHOX2B Krithika Murali reviewed gene: PHOX2B: Rating: GREEN; Mode of pathogenicity: None; Publications: 31444792; Phenotypes: Central hypoventilation syndrome, congenital, 1, with or without Hirschsprung disease - MIM#209880, Neuroblastoma with Hirschsprung disease - MIM#613013; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13429 PEX26 Krithika Murali reviewed gene: PEX26: Rating: GREEN; Mode of pathogenicity: None; Publications: 12717447, 15858711, 17336976; Phenotypes: Peroxisome biogenesis disorder 7A (Zellweger) - MIM#614872, Peroxisome biogenesis disorder 7B - MIM#614873; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13429 PEX2 Krithika Murali reviewed gene: PEX2: Rating: GREEN; Mode of pathogenicity: None; Publications: 14630978, 10528859, 23430938, 1546315; Phenotypes: Peroxisome biogenesis disorder 5A (Zellweger) - MIM#614866, Peroxisome biogenesis disorder 5B - MIM#614867; Mode of inheritance: None
Mendeliome v0.13429 PEX19 Krithika Murali reviewed gene: PEX19: Rating: GREEN; Mode of pathogenicity: None; Publications: 10051604, 20683989, 11883941, 28391327; Phenotypes: Peroxisome biogenesis disorder 12A (Zellweger) - MIM#614886; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13429 PEX16 Krithika Murali reviewed gene: PEX16: Rating: GREEN; Mode of pathogenicity: None; Publications: 20647552, 12223482, 9837814, 11890679; Phenotypes: Peroxisome biogenesis disorder 8A (Zellweger) - MIM#614876, Peroxisome biogenesis disorder 8B - MIM#614877; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13429 PEX14 Krithika Murali reviewed gene: PEX14: Rating: GREEN; Mode of pathogenicity: None; Publications: 18285423, 26627464, 21686775, 15146459; Phenotypes: Peroxisome biogenesis disorder 13A (Zellweger) - MIM#614887; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13429 PEX13 Krithika Murali reviewed gene: PEX13: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Peroxisome biogenesis disorder 11A (Zellweger) - MIM#614883, Peroxisome biogenesis disorder 11B - MIM#614885; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13429 PEX12 Krithika Murali reviewed gene: PEX12: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Peroxisome biogenesis disorder 3A (Zellweger) - MIM#614859, Peroxisome biogenesis disorder 3B - MIM#266510; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Ataxia - adult onset v0.159 PRKCG Michelle Torres reviewed gene: PRKCG: Rating: GREEN; Mode of pathogenicity: Other; Publications: 25217572, 18577575, 31158466; Phenotypes: Spinocerebellar ataxia 14 MIM#605361; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Hereditary Neuropathy - complex v0.125 ETFDH Bryony Thompson Marked gene: ETFDH as ready
Hereditary Neuropathy - complex v0.125 ETFDH Bryony Thompson Gene: etfdh has been classified as Green List (High Evidence).
Hereditary Neuropathy - complex v0.125 ETFDH Bryony Thompson Classified gene: ETFDH as Green List (high evidence)
Hereditary Neuropathy - complex v0.125 ETFDH Bryony Thompson Gene: etfdh has been classified as Green List (High Evidence).
Hereditary Neuropathy - complex v0.124 ETFDH Bryony Thompson gene: ETFDH was added
gene: ETFDH was added to Hereditary Neuropathy - complex. Sources: Literature
Mode of inheritance for gene: ETFDH was set to BIALLELIC, autosomal or pseudoautosomal
Publications for gene: ETFDH were set to 32608139; 35309592; 26821934
Phenotypes for gene: ETFDH were set to Multiple acyl-CoA dehydrogenase deficiency MONDO:0009282; sensory neuropathy
Review for gene: ETFDH was set to GREEN
gene: ETFDH was marked as current diagnostic
Added comment: Sensory neuropathy can be a feature of the condition. >10 cases with biallelic variants has been reported with sensory neuropathy confirmed with nerve conduction studies.
Sources: Literature
Mendeliome v0.13429 DIO1 Zornitza Stark Marked gene: DIO1 as ready
Mendeliome v0.13429 DIO1 Zornitza Stark Gene: dio1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13429 DIO1 Zornitza Stark Phenotypes for gene: DIO1 were changed from to Thyroid hormone metabolism, abnormal, 2, MIM# 619855
Mendeliome v0.13428 DIO1 Zornitza Stark Mode of inheritance for gene: DIO1 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13427 DIO1 Zornitza Stark Classified gene: DIO1 as Amber List (moderate evidence)
Mendeliome v0.13427 DIO1 Zornitza Stark Gene: dio1 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13426 DIO1 Zornitza Stark reviewed gene: DIO1: Rating: AMBER; Mode of pathogenicity: None; Publications: ; Phenotypes: Thyroid hormone metabolism, abnormal, 2, MIM# 619855; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Bleeding and Platelet Disorders v1.11 TUBA8 Zornitza Stark Marked gene: TUBA8 as ready
Bleeding and Platelet Disorders v1.11 TUBA8 Zornitza Stark Gene: tuba8 has been classified as Amber List (Moderate Evidence).
Bleeding and Platelet Disorders v1.11 TUBA8 Zornitza Stark Classified gene: TUBA8 as Amber List (moderate evidence)
Bleeding and Platelet Disorders v1.11 TUBA8 Zornitza Stark Gene: tuba8 has been classified as Amber List (Moderate Evidence).
Bleeding and Platelet Disorders v1.10 TUBA8 Zornitza Stark gene: TUBA8 was added
gene: TUBA8 was added to Bleeding and Platelet Disorders. Sources: Expert list
Mode of inheritance for gene: TUBA8 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: TUBA8 were set to 34704371
Phenotypes for gene: TUBA8 were set to Macrothrombocytopaenia, isolated, 2, autosomal dominant, MIM# 619840
Review for gene: TUBA8 was set to AMBER
Added comment: 6 unrelated individuals with missense variants found in a large cohort of blood donors, some functional data. Individuals were generally asymptomatic, one had menorrhagia.
Sources: Expert list
Mendeliome v0.13426 TUBA8 Zornitza Stark Phenotypes for gene: TUBA8 were changed from Cortical dysplasia, complex, with other brain malformations 8, MIM# 613180 to Macrothrombocytopaenia, isolated, 2, autosomal dominant, MIM# 619840
Mendeliome v0.13425 TUBA8 Zornitza Stark Publications for gene: TUBA8 were set to 19896110; 31481326; 28388629
Mendeliome v0.13424 TUBA8 Zornitza Stark Mode of inheritance for gene: TUBA8 was changed from BIALLELIC, autosomal or pseudoautosomal to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13423 TUBA8 Zornitza Stark Classified gene: TUBA8 as Amber List (moderate evidence)
Mendeliome v0.13423 TUBA8 Zornitza Stark Gene: tuba8 has been classified as Amber List (Moderate Evidence).
Mendeliome v0.13422 TUBA8 Zornitza Stark changed review comment from: Two families reported initially (PMID 19896110). However, note that mouse model does not have a brain phenotype and WES in the original families identified homozygous, previously reported as pathogenic, LoF variant in SNAP29, which is much more likely to be causative (28388629).; to: Bi-allelic variants and cortical dysplasia: Two families reported initially (PMID 19896110). However, note that mouse model does not have a brain phenotype and WES in the original families identified homozygous, previously reported as pathogenic, LoF variant in SNAP29, which is much more likely to be causative (28388629).
Mendeliome v0.13422 TUBA8 Zornitza Stark edited their review of gene: TUBA8: Added comment: Mono-allelic variants and macrothrombocytopaenia: 6 unrelated individuals with missense variants found in a large cohort of blood donors, some functional data. Individuals were generally asymptomatic.; Changed rating: AMBER; Changed publications: 34704371; Changed phenotypes: Macrothrombocytopaenia, isolated, 2, autosomal dominant, MIM# 619840; Changed mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Intellectual disability syndromic and non-syndromic v0.4705 NRCAM Zornitza Stark Phenotypes for gene: NRCAM were changed from Neurodevelopmental disorder with neuromuscular and skeletal abnormalities, MIM# 619833 to Neurodevelopmental disorder with neuromuscular and skeletal abnormalities, MIM# 619833
Intellectual disability syndromic and non-syndromic v0.4705 NRCAM Zornitza Stark Phenotypes for gene: NRCAM were changed from neurodevelopmental disorder, MONDO:0700092 to Neurodevelopmental disorder with neuromuscular and skeletal abnormalities, MIM# 619833
Intellectual disability syndromic and non-syndromic v0.4704 NRCAM Zornitza Stark reviewed gene: NRCAM: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Neurodevelopmental disorder with neuromuscular and skeletal abnormalities, MIM# 619833; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13422 NRCAM Zornitza Stark Phenotypes for gene: NRCAM were changed from neurodevelopmental disorder, NRCAM-related, MONDO:0700092 to Neurodevelopmental disorder with neuromuscular and skeletal abnormalities, MIM# 619833
Mendeliome v0.13421 NRCAM Zornitza Stark reviewed gene: NRCAM: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Neurodevelopmental disorder with neuromuscular and skeletal abnormalities, MIM# 619833; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4704 CDC42BPB Zornitza Stark Phenotypes for gene: CDC42BPB were changed from Central hypotonia; Global developmental delay; Intellectual disability; Seizures; Autistic behavior; Behavioral abnormality to Chilton-Okur-Chung neurodevelopmental syndrome, MIM# 619841
Intellectual disability syndromic and non-syndromic v0.4703 CDC42BPB Zornitza Stark reviewed gene: CDC42BPB: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Chilton-Okur-Chung neurodevelopmental syndrome, MIM# 619841; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Genetic Epilepsy v0.1576 CDC42BPB Zornitza Stark Phenotypes for gene: CDC42BPB were changed from Central hypotonia; Global developmental delay; Intellectual disability; Seizures; Autistic behavior; Behavioral abnormality to Chilton-Okur-Chung neurodevelopmental syndrome, MIM# 619841
Genetic Epilepsy v0.1575 CDC42BPB Zornitza Stark edited their review of gene: CDC42BPB: Changed rating: AMBER; Changed phenotypes: Chilton-Okur-Chung neurodevelopmental syndrome, MIM# 619841; Changed mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13421 CDC42BPB Zornitza Stark Phenotypes for gene: CDC42BPB were changed from Central hypotonia; Global developmental delay; Intellectual disability; Seizures; Autistic behavior; Behavioral abnormality to Chilton-Okur-Chung neurodevelopmental syndrome, MIM# 619841
Mendeliome v0.13420 CDC42BPB Zornitza Stark edited their review of gene: CDC42BPB: Changed phenotypes: Chilton-Okur-Chung neurodevelopmental syndrome, MIM# 619841
Hereditary Spastic Paraplegia - paediatric v1.25 ENTPD1 Shekeeb Mohammad reviewed gene: ENTPD1: Rating: GREEN; Mode of pathogenicity: None; Publications: 35471564; Phenotypes: spastic paraplegia, intellectual disability, white matter abnormalities on MRI; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13420 PEX3 Zornitza Stark Marked gene: PEX3 as ready
Mendeliome v0.13420 PEX3 Zornitza Stark Gene: pex3 has been classified as Green List (High Evidence).
Mendeliome v0.13420 PEX3 Zornitza Stark Phenotypes for gene: PEX3 were changed from to Peroxisome biogenesis disorder 10A (Zellweger), MIM# 614882; Peroxisome biogenesis disorder 10B , MIM# 617370
Mendeliome v0.13419 PEX3 Zornitza Stark Publications for gene: PEX3 were set to
Mendeliome v0.13418 PEX3 Zornitza Stark Mode of inheritance for gene: PEX3 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13417 PEX3 Zornitza Stark reviewed gene: PEX3: Rating: GREEN; Mode of pathogenicity: None; Publications: 10942428, 10958759, 10968777, 27557811, 33101983; Phenotypes: Peroxisome biogenesis disorder 10A (Zellweger), MIM# 614882, Peroxisome biogenesis disorder 10B , MIM# 617370; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Peroxisomal Disorders v0.39 PEX5 Zornitza Stark Marked gene: PEX5 as ready
Peroxisomal Disorders v0.39 PEX5 Zornitza Stark Gene: pex5 has been classified as Green List (High Evidence).
Peroxisomal Disorders v0.39 PEX5 Zornitza Stark Phenotypes for gene: PEX5 were changed from to Peroxisome biogenesis disorder 2A (Zellweger), MIM# 214110; Peroxisome biogenesis disorder 2B, MIM# 202370; Rhizomelic chondrodysplasia punctata, type 5, MIM# 616716
Peroxisomal Disorders v0.38 PEX5 Zornitza Stark Publications for gene: PEX5 were set to
Peroxisomal Disorders v0.37 PEX5 Zornitza Stark Mode of inheritance for gene: PEX5 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Peroxisomal Disorders v0.36 PEX5 Zornitza Stark reviewed gene: PEX5: Rating: GREEN; Mode of pathogenicity: None; Publications: 7719337, 26220973, 20301621; Phenotypes: Peroxisome biogenesis disorder 2A (Zellweger), MIM# 214110, Peroxisome biogenesis disorder 2B, MIM# 202370, Rhizomelic chondrodysplasia punctata, type 5, MIM# 616716; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13417 PEX5 Zornitza Stark Marked gene: PEX5 as ready
Mendeliome v0.13417 PEX5 Zornitza Stark Gene: pex5 has been classified as Green List (High Evidence).
Mendeliome v0.13417 PEX5 Zornitza Stark Phenotypes for gene: PEX5 were changed from to Peroxisome biogenesis disorder 2A (Zellweger), MIM# 214110; Peroxisome biogenesis disorder 2B, MIM# 202370; Rhizomelic chondrodysplasia punctata, type 5, MIM# 616716
Mendeliome v0.13416 PEX5 Zornitza Stark Publications for gene: PEX5 were set to
Mendeliome v0.13415 PEX5 Zornitza Stark Mode of inheritance for gene: PEX5 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13414 PEX5 Zornitza Stark reviewed gene: PEX5: Rating: GREEN; Mode of pathogenicity: None; Publications: 7719337, 26220973, 20301621; Phenotypes: Peroxisome biogenesis disorder 2A (Zellweger), MIM# 214110, Peroxisome biogenesis disorder 2B, MIM# 202370, Rhizomelic chondrodysplasia punctata, type 5, MIM# 616716; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Peroxisomal Disorders v0.36 PEX7 Zornitza Stark Marked gene: PEX7 as ready
Peroxisomal Disorders v0.36 PEX7 Zornitza Stark Gene: pex7 has been classified as Green List (High Evidence).
Peroxisomal Disorders v0.36 PEX7 Zornitza Stark Phenotypes for gene: PEX7 were changed from to Peroxisome biogenesis disorder 9B, MIM# 614879; Rhizomelic chondrodysplasia punctata, type 1, MIM# 215100
Peroxisomal Disorders v0.35 PEX7 Zornitza Stark Publications for gene: PEX7 were set to
Peroxisomal Disorders v0.34 PEX7 Zornitza Stark Mode of inheritance for gene: PEX7 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Peroxisomal Disorders v0.33 PEX7 Zornitza Stark reviewed gene: PEX7: Rating: GREEN; Mode of pathogenicity: None; Publications: 11781871, 12522768, 12325024; Phenotypes: Peroxisome biogenesis disorder 9B, MIM# 614879, Rhizomelic chondrodysplasia punctata, type 1, MIM# 215100; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13414 PEX7 Zornitza Stark Marked gene: PEX7 as ready
Mendeliome v0.13414 PEX7 Zornitza Stark Gene: pex7 has been classified as Green List (High Evidence).
Mendeliome v0.13414 PEX7 Zornitza Stark Phenotypes for gene: PEX7 were changed from to Peroxisome biogenesis disorder 9B, MIM# 614879; Rhizomelic chondrodysplasia punctata, type 1, MIM# 215100
Mendeliome v0.13413 PEX7 Zornitza Stark Publications for gene: PEX7 were set to
Mendeliome v0.13412 PEX7 Zornitza Stark Mode of inheritance for gene: PEX7 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13411 PEX7 Zornitza Stark Deleted their comment
Mendeliome v0.13411 PEX7 Zornitza Stark edited their review of gene: PEX7: Added comment: Well established gene-disease associations.; Changed publications: 11781871, 12522768, 12325024; Changed phenotypes: Peroxisome biogenesis disorder 9B, MIM# 614879, Rhizomelic chondrodysplasia punctata, type 1, MIM# 215100
Mendeliome v0.13411 PFKM Zornitza Stark Marked gene: PFKM as ready
Mendeliome v0.13411 PFKM Zornitza Stark Gene: pfkm has been classified as Green List (High Evidence).
Mendeliome v0.13411 PFKM Zornitza Stark Phenotypes for gene: PFKM were changed from to Glycogen storage disease VII, MIM# 232800
Mendeliome v0.13410 PFKM Zornitza Stark Publications for gene: PFKM were set to
Mendeliome v0.13409 PFKM Zornitza Stark Mode of inheritance for gene: PFKM was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13408 PFKM Zornitza Stark reviewed gene: PFKM: Rating: GREEN; Mode of pathogenicity: None; Publications: 2140573, 8444874, 7513946, 7550225; Phenotypes: Glycogen storage disease VII, MIM# 232800; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13408 PGAM2 Zornitza Stark Marked gene: PGAM2 as ready
Mendeliome v0.13408 PGAM2 Zornitza Stark Gene: pgam2 has been classified as Green List (High Evidence).
Mendeliome v0.13408 PGAM2 Zornitza Stark Phenotypes for gene: PGAM2 were changed from to Glycogen storage disease X, MIM# 261670
Mendeliome v0.13407 PGAM2 Zornitza Stark Publications for gene: PGAM2 were set to
Mendeliome v0.13406 PGAM2 Zornitza Stark Mode of inheritance for gene: PGAM2 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13405 PGAM2 Zornitza Stark reviewed gene: PGAM2: Rating: GREEN; Mode of pathogenicity: None; Publications: 8447317, 34237446, 30310767; Phenotypes: Glycogen storage disease X, MIM# 261670; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13405 PHF11 Zornitza Stark Marked gene: PHF11 as ready
Mendeliome v0.13405 PHF11 Zornitza Stark Gene: phf11 has been classified as Red List (Low Evidence).
Mendeliome v0.13405 PHF11 Zornitza Stark Classified gene: PHF11 as Red List (low evidence)
Mendeliome v0.13405 PHF11 Zornitza Stark Gene: phf11 has been classified as Red List (Low Evidence).
Mendeliome v0.13404 PHF11 Zornitza Stark reviewed gene: PHF11: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Mendeliome v0.13404 PHIP Zornitza Stark Marked gene: PHIP as ready
Mendeliome v0.13404 PHIP Zornitza Stark Gene: phip has been classified as Green List (High Evidence).
Mendeliome v0.13404 PHIP Zornitza Stark Phenotypes for gene: PHIP were changed from to Chung-Jansen syndrome, MIM# 617991
Mendeliome v0.13403 PHIP Zornitza Stark Publications for gene: PHIP were set to
Mendeliome v0.13402 PHIP Zornitza Stark Mode of inheritance for gene: PHIP was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13401 PHIP Zornitza Stark changed review comment from: Chung-Jansen syndrome (CHUJANS) is characterized by global developmental delay apparent from infancy, impaired intellectual development or learning difficulties, behavioral abnormalities, dysmorphic features, and obesity.

More than 20 individuals reported.; to: Chung-Jansen syndrome (CHUJANS) is characterized by global developmental delay apparent from infancy, impaired intellectual development or learning difficulties, behavioural abnormalities, dysmorphic features, and obesity.

More than 20 individuals reported.
Mendeliome v0.13401 PHIP Zornitza Stark reviewed gene: PHIP: Rating: GREEN; Mode of pathogenicity: None; Publications: 23033978, 27900362, 29209020]; Phenotypes: Chung-Jansen syndrome, MIM# 617991; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13401 PHKA2 Zornitza Stark Marked gene: PHKA2 as ready
Mendeliome v0.13401 PHKA2 Zornitza Stark Gene: phka2 has been classified as Green List (High Evidence).
Mendeliome v0.13401 PHKA2 Zornitza Stark Phenotypes for gene: PHKA2 were changed from to Glycogen storage disease, type IXa1 and a2, MIM# 306000
Mendeliome v0.13400 PHKA2 Zornitza Stark Publications for gene: PHKA2 were set to
Mendeliome v0.13399 PHKA2 Zornitza Stark Mode of inheritance for gene: PHKA2 was changed from Unknown to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.13398 PHKA2 Zornitza Stark edited their review of gene: PHKA2: Changed mode of inheritance: X-LINKED: hemizygous mutation in males, biallelic mutations in females
Mendeliome v0.13398 PHKA2 Zornitza Stark reviewed gene: PHKA2: Rating: GREEN; Mode of pathogenicity: None; Publications: 7711737, 7847371, 8733134; Phenotypes: Glycogen storage disease, type IXa1 and a2, MIM# 306000; Mode of inheritance: None
Mendeliome v0.13398 PIK3CA Zornitza Stark Marked gene: PIK3CA as ready
Mendeliome v0.13398 PIK3CA Zornitza Stark Gene: pik3ca has been classified as Green List (High Evidence).
Mendeliome v0.13398 PIK3CA Zornitza Stark Phenotypes for gene: PIK3CA were changed from to Megalencephaly-capillary malformation (MCAP) syndrome , MIM#602501; CLAPO syndrome, somatic, MIM# 613089; CLOVE syndrome, somatic, MIM# 612918
Mendeliome v0.13397 PIK3CA Zornitza Stark Mode of inheritance for gene: PIK3CA was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13396 PIK3CA Zornitza Stark reviewed gene: PIK3CA: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Megalencephaly-capillary malformation (MCAP) syndrome , MIM#602501, CLAPO syndrome, somatic, MIM# 613089, CLOVE syndrome, somatic, MIM# 612918; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13396 PISD Zornitza Stark Phenotypes for gene: PISD were changed from to Liberfarb syndrome, MIM# 618889; Intellectual disability; cataracts; retinal degeneration; microcephaly; deafness; short stature; white matter abnormalities
Mendeliome v0.13395 PISD Zornitza Stark Publications for gene: PISD were set to
Mendeliome v0.13394 PISD Zornitza Stark Mode of inheritance for gene: PISD was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13393 PISD Zornitza Stark edited their review of gene: PISD: Changed phenotypes: Liberfarb syndrome, MIM# 618889, Intellectual disability, cataracts, retinal degeneration, microcephaly, deafness, short stature, white matter abnormalities
Peroxisomal Disorders v0.33 PHYH Zornitza Stark Marked gene: PHYH as ready
Peroxisomal Disorders v0.33 PHYH Zornitza Stark Gene: phyh has been classified as Green List (High Evidence).
Peroxisomal Disorders v0.33 PHYH Zornitza Stark Phenotypes for gene: PHYH were changed from to Refsum disease, MIM# 266500
Peroxisomal Disorders v0.32 PHYH Zornitza Stark Publications for gene: PHYH were set to
Peroxisomal Disorders v0.31 PHYH Zornitza Stark Mode of inheritance for gene: PHYH was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Peroxisomal Disorders v0.30 PHYH Zornitza Stark reviewed gene: PHYH: Rating: GREEN; Mode of pathogenicity: None; Publications: 9326939, 9326940; Phenotypes: Refsum disease, MIM# 266500; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13393 PHYH Zornitza Stark Marked gene: PHYH as ready
Mendeliome v0.13393 PHYH Zornitza Stark Gene: phyh has been classified as Green List (High Evidence).
Mendeliome v0.13393 PHYH Zornitza Stark Phenotypes for gene: PHYH were changed from to Refsum disease, MIM# 266500
Mendeliome v0.13392 PHYH Zornitza Stark Publications for gene: PHYH were set to
Mendeliome v0.13391 PHYH Zornitza Stark Mode of inheritance for gene: PHYH was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13390 PHYH Zornitza Stark Deleted their comment
Mendeliome v0.13390 PHYH Zornitza Stark edited their review of gene: PHYH: Added comment: Refsum disease is an autosomal recessive inborn error of lipid metabolism classically characterized by a tetrad of clinical abnormalities: retinitis pigmentosa, peripheral neuropathy, cerebellar ataxia, and elevated protein levels in the cerebrospinal fluid (CSF) without an increase in the number of cells.

Well established gene-disease association.; Changed publications: 9326939, 9326940
Mendeliome v0.13390 PIEZO2 Zornitza Stark Marked gene: PIEZO2 as ready
Mendeliome v0.13390 PIEZO2 Zornitza Stark Gene: piezo2 has been classified as Green List (High Evidence).
Mendeliome v0.13390 PIEZO2 Zornitza Stark Phenotypes for gene: PIEZO2 were changed from to Marden-Walker syndrome (MIM#248700); Arthrogryposis, distal, type 3 (MIM#114300); Arthrogryposis, distal, type 5 (MIM#108145); Arthrogryposis, distal, with impaired proprioception and touch, MIM# 617146
Mendeliome v0.13389 PIEZO2 Zornitza Stark Publications for gene: PIEZO2 were set to
Mendeliome v0.13388 PIEZO2 Zornitza Stark Mode of inheritance for gene: PIEZO2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Arthrogryposis v0.340 PIEZO2 Zornitza Stark Phenotypes for gene: PIEZO2 were changed from Arthrogryposis, distal, with impaired proprioception and touch (MIM # 617146) to Arthrogryposis, distal, type 3 (MIM#114300); Arthrogryposis, distal, type 5 (MIM#108145); Arthrogryposis, distal, with impaired proprioception and touch, MIM# 617146
Arthrogryposis v0.339 PIEZO2 Zornitza Stark Publications for gene: PIEZO2 were set to 30941898
Mendeliome v0.13387 PIEZO2 Zornitza Stark changed review comment from: Bi-allelic variants: more than 5 unrelated families reported.

Mono-allelic variants:
DA5, more than 20 families reported.
DA3, more than 10 families reported, R2686H is recurrent.; to: Bi-allelic variants: more than 5 unrelated families reported.

Mono-allelic variants:
DA5, more than 20 families reported.
DA3, more than 10 families reported, R2686H is recurrent.
Marden-Walker: 2 families reported.
Arthrogryposis v0.338 PIEZO2 Zornitza Stark Mode of inheritance for gene: PIEZO2 was changed from BIALLELIC, autosomal or pseudoautosomal to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Arthrogryposis v0.337 PIEZO2 Zornitza Stark commented on gene: PIEZO2: Bi-allelic variants: more than 5 unrelated families reported.

Mono-allelic variants:
DA5, more than 20 families reported.
DA3, more than 10 families reported, R2686H is recurrent.
Arthrogryposis v0.337 PIEZO2 Zornitza Stark reviewed gene: PIEZO2: Rating: GREEN; Mode of pathogenicity: None; Publications: 27653382, 27607563, 27843126, 27974811, 24726473; Phenotypes: Arthrogryposis, distal, type 3 (MIM#114300), Arthrogryposis, distal, type 5 (MIM#108145), Arthrogryposis, distal, with impaired proprioception and touch, MIM# 617146; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13387 PIEZO2 Zornitza Stark edited their review of gene: PIEZO2: Changed phenotypes: Marden-Walker syndrome (MIM#248700), Arthrogryposis, distal, type 3 (MIM#114300), Arthrogryposis, distal, type 5 (MIM#108145), Arthrogryposis, distal, with impaired proprioception and touch, MIM# 617146
Mendeliome v0.13387 PIEZO2 Zornitza Stark changed review comment from: Bi-allelic variants: more than 5 unrelated families reported.

Mono-allelic variants:
DA5, more than 20 families reported.; to: Bi-allelic variants: more than 5 unrelated families reported.

Mono-allelic variants:
DA5, more than 20 families reported.
DA3, more than 10 families reported, R2686H is recurrent.
Mendeliome v0.13387 PIEZO2 Zornitza Stark changed review comment from: Bi-allelic variants: more than 5 unrelated families reported.

Mono-allelic variants:
DA3, more than 20 families reported.; to: Bi-allelic variants: more than 5 unrelated families reported.

Mono-allelic variants:
DA5, more than 20 families reported.
Mendeliome v0.13387 PIEZO2 Zornitza Stark changed review comment from: Bi-allelic variants: more than 5 unrelated families reported.; to: Bi-allelic variants: more than 5 unrelated families reported.

Mono-allelic variants:
DA3, more than 20 families reported.
Mendeliome v0.13387 PIEZO2 Zornitza Stark edited their review of gene: PIEZO2: Changed publications: 27653382, 27607563, 27843126, 27974811, 24726473
Mendeliome v0.13387 RSPH1 Belinda Chong reviewed gene: RSPH1: Rating: GREEN; Mode of pathogenicity: None; Publications: 23993197; Phenotypes: Ciliary dyskinesia, primary, 24 MIM#615481; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13387 PIEZO2 Zornitza Stark reviewed gene: PIEZO2: Rating: GREEN; Mode of pathogenicity: None; Publications: 27653382, 27607563, 27843126, 27974811; Phenotypes: Marden-Walker syndrome (MIM#248700), Arthrogryposis, distal, type 3 (MIM#114300), Arthrogryposis, distal, type 5 (MIM#108145); Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Genetic Epilepsy v0.1575 BSCL2 Zornitza Stark changed review comment from: Bi-allelic variants: multiple families reported with syndromic lipodystrophy including EE.

Mono-allelic variants: Two families reported with de novo variants in PMIDs 31369919 and 35290466. We are aware of further three individuals identified as a result of clinical testing, so a total of 4 with a change at position p.Pro149; to: Bi-allelic variants: multiple families reported with syndromic lipodystrophy including EE.

Mono-allelic variants: Two families reported with de novo variants in PMIDs 31369919 and 35290466. We are aware of further three individuals identified as a result of clinical testing, so a total of 4 with a change at position p.Pro149
Genetic Epilepsy v0.1575 BSCL2 Zornitza Stark Marked gene: BSCL2 as ready
Genetic Epilepsy v0.1575 BSCL2 Zornitza Stark Gene: bscl2 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1575 BSCL2 Zornitza Stark Phenotypes for gene: BSCL2 were changed from to Encephalopathy, progressive, with or without lipodystrophy, MIM#615924; Developmental and epileptic encephalopathy, BSCL2-related, dominant, MONDO:0100062
Genetic Epilepsy v0.1574 BSCL2 Zornitza Stark Publications for gene: BSCL2 were set to
Genetic Epilepsy v0.1573 BSCL2 Zornitza Stark Mode of inheritance for gene: BSCL2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Genetic Epilepsy v0.1572 BSCL2 Zornitza Stark reviewed gene: BSCL2: Rating: GREEN; Mode of pathogenicity: None; Publications: 11479539, 15181077, 15126564, 23564749, 31369919, 35290466; Phenotypes: Encephalopathy, progressive, with or without lipodystrophy, MIM#615924, Developmental and epileptic encephalopathy, BSCL2-related, dominant, MONDO:0100062; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13387 BSCL2 Zornitza Stark Marked gene: BSCL2 as ready
Mendeliome v0.13387 BSCL2 Zornitza Stark Gene: bscl2 has been classified as Green List (High Evidence).
Mendeliome v0.13387 BSCL2 Zornitza Stark Phenotypes for gene: BSCL2 were changed from to Neuropathy, distal hereditary motor, type VC, MIM# 619112; Encephalopathy, progressive, with or without lipodystrophy, MIM#615924; Lipodystrophy, congenital generalized, type 2, MIM# 269700; Silver spastic paraplegia syndrome, MIM# 270685; Developmental and epileptic encephalopathy, BSCL2-related, dominant, MONDO:0100062
Mendeliome v0.13386 BSCL2 Zornitza Stark Publications for gene: BSCL2 were set to
Mendeliome v0.13385 BSCL2 Zornitza Stark Mode of inheritance for gene: BSCL2 was changed from Unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Mendeliome v0.13384 BSCL2 Zornitza Stark edited their review of gene: BSCL2: Added comment: Multiple families reported with bi-allelic variants and isolated or syndromic lipodystrophy.

Mono-allelic variants and DEE: Two families reported with de novo variants in PMIDs 31369919 and 35290466. We are aware of further three individuals identified as a result of clinical testing, so a total of 4 with a change at position p.Pro149; Changed publications: 14981520, 15732094, 11479539, 15181077, 15126564, 23564749, 31369919, 35290466
Mendeliome v0.13384 BSCL2 Zornitza Stark edited their review of gene: BSCL2: Changed phenotypes: Neuropathy, distal hereditary motor, type VC, MIM# 619112, Encephalopathy, progressive, with or without lipodystrophy, MIM#615924, Lipodystrophy, congenital generalized, type 2, MIM# 269700, Silver spastic paraplegia syndrome, MIM# 270685, Developmental and epileptic encephalopathy, BSCL2-related, dominant, MONDO:0100062; Changed mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Genetic Epilepsy v0.1572 CNNM2 Ain Roesley Phenotypes for gene: CNNM2 were changed from Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418 to Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418
Genetic Epilepsy v0.1572 CNNM2 Ain Roesley Phenotypes for gene: CNNM2 were changed from Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418 to Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418
Genetic Epilepsy v0.1572 CNNM2 Ain Roesley Publications for gene: CNNM2 were set to 34604137; 35170241
Genetic Epilepsy v0.1572 CNNM2 Ain Roesley Publications for gene: CNNM2 were set to 34604137; 35170241
Genetic Epilepsy v0.1572 CNNM2 Ain Roesley Mode of inheritance for gene: CNNM2 was changed from BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Genetic Epilepsy v0.1572 CNNM2 Ain Roesley Phenotypes for gene: CNNM2 were changed from Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418 to Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418
Intellectual disability syndromic and non-syndromic v0.4703 CNNM2 Ain Roesley Marked gene: CNNM2 as ready
Intellectual disability syndromic and non-syndromic v0.4703 CNNM2 Ain Roesley Gene: cnnm2 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1572 CNNM2 Ain Roesley Mode of inheritance for gene: CNNM2 was changed from BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4703 CNNM2 Ain Roesley Publications for gene: CNNM2 were set to
Genetic Epilepsy v0.1571 CNNM2 Ain Roesley Phenotypes for gene: CNNM2 were changed from to Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418
Intellectual disability syndromic and non-syndromic v0.4703 CNNM2 Ain Roesley Mode of inheritance for gene: CNNM2 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Genetic Epilepsy v0.1571 CNNM2 Ain Roesley Publications for gene: CNNM2 were set to
Intellectual disability syndromic and non-syndromic v0.4703 CNNM2 Ain Roesley Phenotypes for gene: CNNM2 were changed from to Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418
Genetic Epilepsy v0.1571 CNNM2 Ain Roesley Mode of inheritance for gene: CNNM2 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Genetic Epilepsy v0.1570 CNNM2 Ain Roesley Marked gene: CNNM2 as ready
Genetic Epilepsy v0.1570 CNNM2 Ain Roesley Gene: cnnm2 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1570 CNNM2 Ain Roesley Marked gene: CNNM2 as ready
Genetic Epilepsy v0.1570 CNNM2 Ain Roesley Gene: cnnm2 has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1570 CNNM2 Ain Roesley reviewed gene: CNNM2: Rating: GREEN; Mode of pathogenicity: None; Publications: 34604137, 35170241; Phenotypes: Hypomagnesemia 6, renal MIM#613882, Hypomagnesemia, seizures, and mental retardation MIM#616418; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Intellectual disability syndromic and non-syndromic v0.4702 CNNM2 Ain Roesley reviewed gene: CNNM2: Rating: GREEN; Mode of pathogenicity: None; Publications: 34604137, 35170241; Phenotypes: Hypomagnesemia 6, renal MIM#613882, Hypomagnesemia, seizures, and mental retardation MIM#616418; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13384 CNNM2 Ain Roesley Marked gene: CNNM2 as ready
Mendeliome v0.13384 CNNM2 Ain Roesley Gene: cnnm2 has been classified as Green List (High Evidence).
Mendeliome v0.13384 CNNM2 Ain Roesley Phenotypes for gene: CNNM2 were changed from to Hypomagnesemia 6, renal MIM#613882; Hypomagnesemia, seizures, and mental retardation MIM#616418
Mendeliome v0.13383 CNNM2 Ain Roesley Publications for gene: CNNM2 were set to
Mendeliome v0.13383 CNNM2 Ain Roesley Mode of inheritance for gene: CNNM2 was changed from Unknown to BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Mendeliome v0.13382 CNNM2 Ain Roesley reviewed gene: CNNM2: Rating: GREEN; Mode of pathogenicity: None; Publications: 34604137, 35170241; Phenotypes: Hypomagnesemia 6, renal MIM#613882, Hypomagnesemia, seizures, and mental retardation MIM#616418; Mode of inheritance: BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13382 PIGC Zornitza Stark Marked gene: PIGC as ready
Mendeliome v0.13382 PIGC Zornitza Stark Gene: pigc has been classified as Green List (High Evidence).
Mendeliome v0.13382 PIGC Zornitza Stark Phenotypes for gene: PIGC were changed from to Glycosylphosphatidylinositol biosynthesis defect 16, MIM# 617816
Intellectual disability syndromic and non-syndromic v0.4702 PIGC Zornitza Stark Publications for gene: PIGC were set to 27694521
Intellectual disability syndromic and non-syndromic v0.4701 PIGC Zornitza Stark edited their review of gene: PIGC: Added comment: Third family reported, pair of siblings, DD/seizures.; Changed publications: 27694521, 32707268
Mendeliome v0.13381 PIGC Zornitza Stark Publications for gene: PIGC were set to
Mendeliome v0.13380 PIGC Zornitza Stark Mode of inheritance for gene: PIGC was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13379 PIGC Zornitza Stark reviewed gene: PIGC: Rating: GREEN; Mode of pathogenicity: None; Publications: 27694521, 32707268; Phenotypes: Glycosylphosphatidylinositol biosynthesis defect 16, MIM# 617816; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13379 CNGB1 Ain Roesley Marked gene: CNGB1 as ready
Mendeliome v0.13379 CNGB1 Ain Roesley Gene: cngb1 has been classified as Green List (High Evidence).
Mendeliome v0.13379 CNGB1 Ain Roesley Phenotypes for gene: CNGB1 were changed from to Retinitis pigmentosa 45 MIM#613767
Mendeliome v0.13378 CNGB1 Ain Roesley Publications for gene: CNGB1 were set to
Mendeliome v0.13378 CNGB1 Ain Roesley Mode of inheritance for gene: CNGB1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13377 CNGB1 Ain Roesley edited their review of gene: CNGB1: Changed rating: GREEN
Mendeliome v0.13377 CNGB1 Ain Roesley reviewed gene: CNGB1: Rating: ; Mode of pathogenicity: None; Publications: 11379879, 15557452, 23661369, 33847019; Phenotypes: Retinitis pigmentosa 45 MIM#613767; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13377 CNGA1 Ain Roesley Marked gene: CNGA1 as ready
Mendeliome v0.13377 CNGA1 Ain Roesley Gene: cnga1 has been classified as Green List (High Evidence).
Mendeliome v0.13377 CNGA1 Ain Roesley Phenotypes for gene: CNGA1 were changed from to Retinitis pigmentosa 49 MIM#613756
Mendeliome v0.13376 CNGA1 Ain Roesley Publications for gene: CNGA1 were set to
Mendeliome v0.13376 CNGA1 Ain Roesley Mode of inheritance for gene: CNGA1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13375 CNGA1 Ain Roesley edited their review of gene: CNGA1: Changed publications: 33633220, 32705276, 30652268, 20301590, 7479749
Mendeliome v0.13375 CNGA1 Ain Roesley reviewed gene: CNGA1: Rating: GREEN; Mode of pathogenicity: None; Publications: 33633220, 32705276, 30652268, 20301590, 7479749]; Phenotypes: Retinitis pigmentosa 49 MIM#613756; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13375 CLN8 Ain Roesley Marked gene: CLN8 as ready
Mendeliome v0.13375 CLN8 Ain Roesley Gene: cln8 has been classified as Green List (High Evidence).
Mendeliome v0.13375 CLN8 Ain Roesley Publications for gene: CLN8 were set to
Mendeliome v0.13375 CLN8 Ain Roesley Phenotypes for gene: CLN8 were changed from to Ceroid lipofuscinosis, neuronal, 8, MIM# 600143; Ceroid lipofuscinosis, neuronal, 8, Northern epilepsy variant, MIM# 610003
Mendeliome v0.13375 CLN8 Ain Roesley Mode of inheritance for gene: CLN8 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13374 CLN8 Ain Roesley reviewed gene: CLN8: Rating: GREEN; Mode of pathogenicity: None; Publications: 10508524, 15024724, 16570191; Phenotypes: Ceroid lipofuscinosis, neuronal, 8, MIM# 600143, Ceroid lipofuscinosis, neuronal, 8, Northern epilepsy variant, MIM# 610003; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13374 CLN6 Ain Roesley Marked gene: CLN6 as ready
Mendeliome v0.13374 CLN6 Ain Roesley Gene: cln6 has been classified as Green List (High Evidence).
Mendeliome v0.13374 CLN6 Ain Roesley Phenotypes for gene: CLN6 were changed from to Ceroid lipofuscinosis, neuronal, 6, MIM# 601780; Ceroid lipofuscinosis, neuronal, Kufs type, adult onset, MIM# 204300
Mendeliome v0.13373 CLN6 Ain Roesley Publications for gene: CLN6 were set to
Mendeliome v0.13373 CLN6 Ain Roesley Mode of inheritance for gene: CLN6 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13372 CLN6 Ain Roesley reviewed gene: CLN6: Rating: GREEN; Mode of pathogenicity: None; Publications: 11791207, 11727201, 21549341, 30561534; Phenotypes: Ceroid lipofuscinosis, neuronal, 6, MIM# 601780, Ceroid lipofuscinosis, neuronal, Kufs type, adult onset, MIM# 204300; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal; Current diagnostic: yes
Mendeliome v0.13372 CLEC7A Ain Roesley Marked gene: CLEC7A as ready
Mendeliome v0.13372 CLEC7A Ain Roesley Gene: clec7a has been classified as Red List (Low Evidence).
Mendeliome v0.13372 CLEC7A Ain Roesley Phenotypes for gene: CLEC7A were changed from to {Aspergillosis, susceptibility to} MIM#614079; candidiasis, familial, 4, autosomal recessive MIM#613108
Mendeliome v0.13371 CLEC7A Ain Roesley Publications for gene: CLEC7A were set to
Mendeliome v0.13371 CLEC7A Ain Roesley Classified gene: CLEC7A as Red List (low evidence)
Mendeliome v0.13371 CLEC7A Ain Roesley Gene: clec7a has been classified as Red List (Low Evidence).
Mendeliome v0.13370 CLEC7A Ain Roesley edited their review of gene: CLEC7A: Changed publications: 19864674, 20807886; Changed phenotypes: {Aspergillosis, susceptibility to} MIM#614079, candidiasis, familial, 4, autosomal recessive MIM#613108; Set current diagnostic: yes
Mendeliome v0.13370 CLEC7A Ain Roesley changed review comment from: Unable to find any mendelian disease association; to: Unable to find any mendelian disease association.

Reports of Tyr238* and it's association with {Aspergillosis, susceptibility to} MIM#614079 leading to candidiasis, familial, 4, autosomal recessive MIM#613108
Mendeliome v0.13370 CLEC7A Ain Roesley reviewed gene: CLEC7A: Rating: RED; Mode of pathogenicity: None; Publications: ; Phenotypes: ; Mode of inheritance: None
Genetic Epilepsy v0.1570 PIGW Zornitza Stark Marked gene: PIGW as ready
Genetic Epilepsy v0.1570 PIGW Zornitza Stark Gene: pigw has been classified as Green List (High Evidence).
Genetic Epilepsy v0.1570 PIGW Zornitza Stark Phenotypes for gene: PIGW were changed from to Glycosylphosphatidylinositol biosynthesis defect 11, MIM# 616025
Genetic Epilepsy v0.1569 PIGW Zornitza Stark Publications for gene: PIGW were set to
Genetic Epilepsy v0.1568 PIGW Zornitza Stark Mode of inheritance for gene: PIGW was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Genetic Epilepsy v0.1567 PIGW Zornitza Stark reviewed gene: PIGW: Rating: GREEN; Mode of pathogenicity: None; Publications: 24367057, 27626616, 30813920, 32198969; Phenotypes: Glycosylphosphatidylinositol biosynthesis defect 11, MIM# 616025; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4701 PIGW Zornitza Stark Marked gene: PIGW as ready
Intellectual disability syndromic and non-syndromic v0.4701 PIGW Zornitza Stark Gene: pigw has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4701 PIGW Zornitza Stark Phenotypes for gene: PIGW were changed from to Glycosylphosphatidylinositol biosynthesis defect 11, MIM# 616025
Intellectual disability syndromic and non-syndromic v0.4700 PIGW Zornitza Stark Publications for gene: PIGW were set to
Intellectual disability syndromic and non-syndromic v0.4699 PIGW Zornitza Stark Mode of inheritance for gene: PIGW was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4698 PIGW Zornitza Stark reviewed gene: PIGW: Rating: GREEN; Mode of pathogenicity: None; Publications: 24367057, 27626616, 30813920, 32198969; Phenotypes: Glycosylphosphatidylinositol biosynthesis defect 11, MIM# 616025; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13370 PIGW Zornitza Stark Marked gene: PIGW as ready
Mendeliome v0.13370 PIGW Zornitza Stark Gene: pigw has been classified as Green List (High Evidence).
Mendeliome v0.13370 PIGW Zornitza Stark Phenotypes for gene: PIGW were changed from to Glycosylphosphatidylinositol biosynthesis defect 11, MIM# 616025
Mendeliome v0.13369 PIGW Zornitza Stark Publications for gene: PIGW were set to
Mendeliome v0.13368 PIGW Zornitza Stark Mode of inheritance for gene: PIGW was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13367 PIGW Zornitza Stark reviewed gene: PIGW: Rating: GREEN; Mode of pathogenicity: None; Publications: 24367057, 27626616, 30813920, 32198969; Phenotypes: Glycosylphosphatidylinositol biosynthesis defect 11, MIM# 616025; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13367 PIK3R2 Zornitza Stark Marked gene: PIK3R2 as ready
Mendeliome v0.13367 PIK3R2 Zornitza Stark Gene: pik3r2 has been classified as Green List (High Evidence).
Mendeliome v0.13367 PIK3R2 Zornitza Stark Phenotypes for gene: PIK3R2 were changed from to Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1, MIM# 603387
Mendeliome v0.13366 PIK3R2 Zornitza Stark Publications for gene: PIK3R2 were set to
Mendeliome v0.13365 PIK3R2 Zornitza Stark Mode of inheritance for gene: PIK3R2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13364 PIK3R2 Zornitza Stark reviewed gene: PIK3R2: Rating: GREEN; Mode of pathogenicity: None; Publications: 22729224, 23745724, 33604570; Phenotypes: Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1, MIM# 603387; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13364 PITX2 Zornitza Stark Marked gene: PITX2 as ready
Mendeliome v0.13364 PITX2 Zornitza Stark Gene: pitx2 has been classified as Green List (High Evidence).
Mendeliome v0.13364 PITX2 Zornitza Stark Phenotypes for gene: PITX2 were changed from to Anterior segment dysgenesis 4, MIM# 137600; Axenfeld-Rieger syndrome, type 1, MIM# 180500
Mendeliome v0.13363 PITX2 Zornitza Stark Publications for gene: PITX2 were set to
Mendeliome v0.13362 PITX2 Zornitza Stark Mode of inheritance for gene: PITX2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13361 PITX2 Zornitza Stark reviewed gene: PITX2: Rating: GREEN; Mode of pathogenicity: None; Publications: 32499604, 32400113, 31341655, 31185933, 30457409; Phenotypes: Anterior segment dysgenesis 4, MIM# 137600, Axenfeld-Rieger syndrome, type 1, MIM# 180500; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13361 PITX3 Zornitza Stark Marked gene: PITX3 as ready
Mendeliome v0.13361 PITX3 Zornitza Stark Gene: pitx3 has been classified as Green List (High Evidence).
Mendeliome v0.13361 PITX3 Zornitza Stark Phenotypes for gene: PITX3 were changed from Anterior segment dysgenesis 1, multiple subtypes, MIM# 107250; Cataract 11, multiple types, MIM# 610623; Microphthalmia to Anterior segment dysgenesis 1, multiple subtypes, MIM# 107250; Cataract 11, multiple types, MIM# 610623; Microphthalmia MONDO:0021129
Mendeliome v0.13360 PITX3 Zornitza Stark Phenotypes for gene: PITX3 were changed from to Anterior segment dysgenesis 1, multiple subtypes, MIM# 107250; Cataract 11, multiple types, MIM# 610623; Microphthalmia
Mendeliome v0.13359 PITX3 Zornitza Stark Publications for gene: PITX3 were set to
Mendeliome v0.13358 PITX3 Zornitza Stark Mode of inheritance for gene: PITX3 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13357 PITX3 Zornitza Stark reviewed gene: PITX3: Rating: GREEN; Mode of pathogenicity: None; Publications: 29405783; Phenotypes: Anterior segment dysgenesis 1, multiple subtypes, MIM# 107250, Cataract 11, multiple types, MIM# 610623, Microphthalmia; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13357 CLDN19 Zornitza Stark Phenotypes for gene: CLDN19 were changed from Hypomagnesemia 5, renal, with ocular involvement, MIM#248190 to Hypomagnesaemia 5, renal, with ocular involvement, MIM#248190
Peroxisomal Disorders v0.30 PEX11B Zornitza Stark Marked gene: PEX11B as ready
Peroxisomal Disorders v0.30 PEX11B Zornitza Stark Gene: pex11b has been classified as Green List (High Evidence).
Peroxisomal Disorders v0.30 PEX11B Zornitza Stark Phenotypes for gene: PEX11B were changed from to Peroxisome biogenesis disorder 14B - MIM#614920
Mendeliome v0.13356 CLCNKB Zornitza Stark Tag SV/CNV tag was added to gene: CLCNKB.
Peroxisomal Disorders v0.29 PEX11B Zornitza Stark Publications for gene: PEX11B were set to
Peroxisomal Disorders v0.28 PEX11B Zornitza Stark Mode of inheritance for gene: PEX11B was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13356 PEX11B Zornitza Stark Marked gene: PEX11B as ready
Mendeliome v0.13356 PEX11B Zornitza Stark Added comment: Comment when marking as ready: Two published families and one International.
Mendeliome v0.13356 PEX11B Zornitza Stark Gene: pex11b has been classified as Green List (High Evidence).
Peroxisomal Disorders v0.27 PEX11B Zornitza Stark reviewed gene: PEX11B: Rating: GREEN; Mode of pathogenicity: None; Publications: 20301621, 22581968; Phenotypes: Peroxisome biogenesis disorder 14B - MIM#614920; Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13356 PEX11B Zornitza Stark Phenotypes for gene: PEX11B were changed from to Peroxisome biogenesis disorder 14B - MIM#614920
Mendeliome v0.13355 PEX11B Zornitza Stark Publications for gene: PEX11B were set to
Mendeliome v0.13354 PEX11B Zornitza Stark Mode of inheritance for gene: PEX11B was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13353 PER2 Zornitza Stark Marked gene: PER2 as ready
Mendeliome v0.13353 PER2 Zornitza Stark Gene: per2 has been classified as Red List (Low Evidence).
Mendeliome v0.13353 PER2 Zornitza Stark Phenotypes for gene: PER2 were changed from to Advanced sleep phase syndrome, familial, 1 - MIM#604348
Mendeliome v0.13352 PER2 Zornitza Stark Publications for gene: PER2 were set to
Mendeliome v0.13351 PER2 Zornitza Stark Mode of inheritance for gene: PER2 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13350 PER2 Zornitza Stark Classified gene: PER2 as Red List (low evidence)
Mendeliome v0.13350 PER2 Zornitza Stark Gene: per2 has been classified as Red List (Low Evidence).
Intellectual disability syndromic and non-syndromic v0.4698 CIT Zornitza Stark Marked gene: CIT as ready
Intellectual disability syndromic and non-syndromic v0.4698 CIT Zornitza Stark Gene: cit has been classified as Green List (High Evidence).
Intellectual disability syndromic and non-syndromic v0.4698 CIT Zornitza Stark Phenotypes for gene: CIT were changed from to Microcephaly 17, primary, autosomal recessive (MIM#617090)
Intellectual disability syndromic and non-syndromic v0.4697 CIT Zornitza Stark Publications for gene: CIT were set to
Intellectual disability syndromic and non-syndromic v0.4696 CIT Zornitza Stark Mode of inheritance for gene: CIT was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Intellectual disability syndromic and non-syndromic v0.4695 CIT Zornitza Stark reviewed gene: CIT: Rating: GREEN; Mode of pathogenicity: None; Publications: 27453578, 27503289, 27453579; Phenotypes: Microcephaly 17, primary, autosomal recessive (MIM#617090); Mode of inheritance: BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13349 PDZD7 Zornitza Stark Marked gene: PDZD7 as ready
Mendeliome v0.13349 PDZD7 Zornitza Stark Gene: pdzd7 has been classified as Green List (High Evidence).
Mendeliome v0.13349 PDZD7 Zornitza Stark Phenotypes for gene: PDZD7 were changed from to Deafness, autosomal recessive 57, MIM# 618003; Usher syndrome, type IIC, GPR98/PDZD7 digenic, MIM# 605472
Mendeliome v0.13348 PDZD7 Zornitza Stark Publications for gene: PDZD7 were set to
Mendeliome v0.13347 PDZD7 Zornitza Stark Mode of inheritance for gene: PDZD7 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13346 PDYN Zornitza Stark edited their review of gene: PDYN: Changed rating: GREEN
Mendeliome v0.13346 PDYN Zornitza Stark Marked gene: PDYN as ready
Mendeliome v0.13346 PDYN Zornitza Stark Added comment: Comment when marking as ready: The presence of some of these variants in the population is concerning. However, functional data also supports gene-disease association.
Mendeliome v0.13346 PDYN Zornitza Stark Gene: pdyn has been classified as Green List (High Evidence).
Mendeliome v0.13346 PDYN Zornitza Stark Phenotypes for gene: PDYN were changed from to Spinocerebellar ataxia 23 - MIM#610245
Mendeliome v0.13345 PDYN Zornitza Stark Publications for gene: PDYN were set to
Mendeliome v0.13344 PDYN Zornitza Stark Mode of inheritance for gene: PDYN was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Dilated Cardiomyopathy v1.9 CHRM2 Zornitza Stark Marked gene: CHRM2 as ready
Dilated Cardiomyopathy v1.9 CHRM2 Zornitza Stark Gene: chrm2 has been classified as Red List (Low Evidence).
Dilated Cardiomyopathy v1.9 CHRM2 Zornitza Stark gene: CHRM2 was added
gene: CHRM2 was added to Dilated Cardiomyopathy. Sources: Expert Review
Mode of inheritance for gene: CHRM2 was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Publications for gene: CHRM2 were set to 23743182; 18451336
Phenotypes for gene: CHRM2 were set to Familial Dilated Cardiomyopathy MONDO#0016333, CHRM2-related
Review for gene: CHRM2 was set to RED
Added comment: 1 family with 12 affecteds (Cys176Gly, absent in gnomad). Proteomics analysis was later conducted

This gene has not been curated by the ClinGen DCM expert panel.
Sources: Expert Review
Cataract v0.327 CHMP4B Zornitza Stark Marked gene: CHMP4B as ready
Cataract v0.327 CHMP4B Zornitza Stark Gene: chmp4b has been classified as Green List (High Evidence).
Cataract v0.327 CHMP4B Zornitza Stark Phenotypes for gene: CHMP4B were changed from to Cataract 31, multiple types MIM#605387
Cataract v0.326 CHMP4B Zornitza Stark Publications for gene: CHMP4B were set to
Cataract v0.325 CHMP4B Zornitza Stark Mode of inheritance for gene: CHMP4B was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Cataract v0.324 CHMP4B Zornitza Stark reviewed gene: CHMP4B: Rating: GREEN; Mode of pathogenicity: None; Publications: 34722561, 17701905, 10682967, 30078984; Phenotypes: Cataract 31, multiple types MIM#605387; Mode of inheritance: MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13343 PDGFRA Zornitza Stark Marked gene: PDGFRA as ready
Mendeliome v0.13343 PDGFRA Zornitza Stark Gene: pdgfra has been classified as Green List (High Evidence).
Mendeliome v0.13343 PDGFRA Zornitza Stark Phenotypes for gene: PDGFRA were changed from to Gastrointestinal stromal tumor/GIST-plus syndrome, somatic or familial - MIM#175510
Mendeliome v0.13342 PDGFRA Zornitza Stark Publications for gene: PDGFRA were set to
Mendeliome v0.13341 PDGFRA Zornitza Stark Mode of inheritance for gene: PDGFRA was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Mendeliome v0.13340 RSPH3 Zornitza Stark Marked gene: RSPH3 as ready
Mendeliome v0.13340 RSPH3 Zornitza Stark Gene: rsph3 has been classified as Green List (High Evidence).
Mendeliome v0.13340 RSPH3 Zornitza Stark Phenotypes for gene: RSPH3 were changed from to Ciliary dyskinesia, primary, 32 MIM#616481
Mendeliome v0.13339 RSPH3 Zornitza Stark Publications for gene: RSPH3 were set to
Mendeliome v0.13338 RSPH3 Zornitza Stark Mode of inheritance for gene: RSPH3 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Mendeliome v0.13337 EIF2AK2 Zornitza Stark edited their review of gene: EIF2AK2: Changed phenotypes: Dystonia 33, MIM# 619687, Leukoencephalopathy, developmental delay, and episodic neurologic regression syndrome, MIM# 618877; Changed mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Dystonia - isolated/combined v1.21 EIF2AK2 Zornitza Stark Marked gene: EIF2AK2 as ready
Dystonia - isolated/combined v1.21 EIF2AK2 Zornitza Stark Gene: eif2ak2 has been classified as Green List (High Evidence).
Dystonia - isolated/combined v1.21 EIF2AK2 Zornitza Stark Phenotypes for gene: EIF2AK2 were changed from early onset, mostly isolated generalised dystonia; dysarthria; tremor to Dystonia 33, MIM# 619687
Dystonia - isolated/combined v1.20 EIF2AK2 Zornitza Stark Mode of pathogenicity for gene: EIF2AK2 was changed from Other to None
Dystonia - isolated/combined v1.19 EIF2AK2 Zornitza Stark Classified gene: EIF2AK2 as Green List (high evidence)
Dystonia - isolated/combined v1.19 EIF2AK2 Zornitza Stark Gene: eif2ak2 has been classified as Green List (High Evidence).
Dystonia - isolated/combined v1.18 EIF2AK2 Zornitza Stark reviewed gene: EIF2AK2: Rating: GREEN; Mode of pathogenicity: None; Publications: ; Phenotypes: Dystonia 33, MIM# 619687; Mode of inheritance: BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Ciliary Dyskinesia v1.18 RSPH4A Zornitza Stark Publications for gene: RSPH4A were set to 25789548; 22448264
Mendeliome v0.13337 RSPH4A Zornitza Stark Marked gene: RSPH4A as ready
Mendeliome v0.13337 RSPH4A Zornitza Stark Gene: rsph4a has been classified as Green List (High Evidence).
Mendeliome v0.13337 RSPH4A Zornitza Stark Phenotypes for gene: RSPH4A were changed from to Ciliary dyskinesia, primary, 11, OMIM#612649
Mendeliome v0.13336 RSPH4A Zornitza Stark Publications for gene: RSPH4A were set to
Mendeliome v0.13335 RSPH4A Zornitza Stark Mode of inheritance for gene: RSPH4A was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Ciliary Dyskinesia v1.17 RSPH9 Zornitza Stark Publications for gene: RSPH9 were set to 25789548; 31285900
Mendeliome v0.13334 RSPH9 Zornitza Stark Marked gene: RSPH9 as ready