Autism
Gene: NLGN3EnsemblGeneIds (GRCh38): ENSG00000196338
EnsemblGeneIds (GRCh37): ENSG00000196338
OMIM: 300336, Gene2Phenotype
NLGN3 is in 5 panels
1 review
Krithika Murali (Victorian Clinical Genetics Services)
Monogenic association with autism spectrum disorder/asperger syndrome +/- ID in at least 3 unrelated families with supportive mouse model and patient-specific functional studies.
PMID: 28584888 Varghese et al 2017 - provide a summary of mouse model findings.
PMID: 31184401 Quartier et al 2019 - provide information regarding 2 previously published families (PMID 12669065; 25167861) and one additional family. Supportive functional studies for all three variants showing effect on NLGN3 localization and expression. Additional family described - two brothers affected by nonsyndromic ID, autistic traits and language impairment, WES analysis identified a maternally inherited missense variant NGLN3 c.1540C>T, Pro514Ser.
PMID: 12669065 Jamain et al 2013 - Missense variant Arg451Cys was identified in two Swedish brothers with ASD, one with typical autism and ID and one with Asperger syndrome
PMID: 25167861 Redin et al 2014 - homozygous missense variant c.1789C>T, Arg597Trp in one boy with ID and ASD and in his maternal cousin with the similar phenotype (Redin et al., 2014).
ClinGen curation 2018 - moderate gene-disease validityCreated: 23 Mar 2022, 3:07 a.m. | Last Modified: 23 Mar 2022, 3:07 a.m.
Panel Version: 0.175
Phenotypes
{Asperger syndrome susceptibility, X-linked 1} - MIM#300494; {Autism susceptibility, X-linked 1} - MIM#300425
Publications
Details
- Mode of Inheritance
- X-LINKED: hemizygous mutation in males, biallelic mutations in females
- Sources
-
- Expert Review Green
- Victorian Clinical Genetics Services
- Phenotypes
-
- X-linked complex neurodevelopmental disorder MONDO:0100148
- {Asperger syndrome susceptibility, X-linked 1} - MIM#300494
- {Autism susceptibility, X-linked 1} - MIM#300425
- OMIM
- 300336
- Clinvar variants
- Variants in NLGN3
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Mode of inheritance for gene: NLGN3 was changed from X-LINKED: hemizygous mutation in males, biallelic mutations in females to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Entity classified by Genomics England curator
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Gene: nlgn3 has been classified as Green List (High Evidence).
Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Phenotypes for gene: NLGN3 were changed from {Asperger syndrome susceptibility, X-linked 1} - MIM#300494; {Autism susceptibility, X-linked 1} - MIM#300425 to X-linked complex neurodevelopmental disorder MONDO:0100148; {Asperger syndrome susceptibility, X-linked 1} - MIM#300494; {Autism susceptibility, X-linked 1} - MIM#300425
Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Phenotypes for gene: NLGN3 were changed from to {Asperger syndrome susceptibility, X-linked 1} - MIM#300494; {Autism susceptibility, X-linked 1} - MIM#300425
Set publications
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Publications for gene: NLGN3 were set to
Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Mode of inheritance for gene: NLGN3 was changed from MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted to X-LINKED: hemizygous mutation in males, biallelic mutations in females
Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Mode of inheritance for gene: NLGN3 was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Created, Added New Source, Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)gene: NLGN3 was added gene: NLGN3 was added to Autism_VCGS. Sources: Expert Review Green,Victorian Clinical Genetics Services Mode of inheritance for gene: NLGN3 was set to Unknown