Description
The gene panel contains genes that cause inborn errors of vitamin metabolism.

This panel is a component of the Metabolic Disorders Superpanel.

2 reviewers

  • Bryony Thompson (Royal Melbourne Hospital)

  • Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

62 Entities

18 reviewed, 51 green

List Entity Reviews Mode of inheritance Details
62 Entitiess
Green Green List (high evidence)
ABCD4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Methylmalonic aciduria and homocystinuria, cblJ type MIM#614857
  • disorder of vitamin B12 metabolism
Tags
Green Green List (high evidence)
AMN
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Imerslund-Grasbeck syndrome 2 MIM#618882
  • Disorders of cobalamin absorption, transport and metabolism
Tags
Green Green List (high evidence)
COASY
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • neurodegeneration with brain iron accumulation 6 MONDO:0014290
  • Disorders of pantothenate and CoA metabolism
Tags
Green Green List (high evidence)
CUBN
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Proteinuria, chronic benign MIM#618884
  • Imerslund-Grasbeck syndrome 1 MIM#261100
  • Intrinsic factor receptor deficiency due to CUBN mutations (Disorders of cobalamin absorption, transport and metabolism)
Tags
  • treatable
Green Green List (high evidence)
CYP24A1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Other disorders of vitamin metabolism
  • hypercalcemia, infantile, 1 MONDO:0020739
Tags
Green Green List (high evidence)
CYP27B1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • vitamin D-dependent rickets, type 1A MONDO:0020723
  • Other disorders of vitamin metabolism
Tags
Green Green List (high evidence)
CYP2R1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • vitamin D hydroxylation-deficient rickets, type 1B MONDO:0010810
  • Other disorders of vitamin metabolism
Tags
Green Green List (high evidence)
ETFA
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • multiple acyl-CoA dehydrogenase deficiency MONDO:0009282
  • Disorders of mitochondrial fatty acid oxidation
Tags
Green Green List (high evidence)
ETFB
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • multiple acyl-CoA dehydrogenase deficiency MONDO:0009282
  • Disorders of mitochondrial fatty acid oxidation
Tags
Green Green List (high evidence)
ETFDH
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • multiple acyl-CoA dehydrogenase deficiency MONDO:0009282
  • Disorders of mitochondrial fatty acid oxidation
Tags
Green Green List (high evidence)
FLAD1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • myopathy with abnormal lipid metabolism MONDO:0009703
  • Disorders of riboflavin metabolism
Tags
Green Green List (high evidence)
FOLR1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Neurodegenerative syndrome due to cerebral folate transport deficiency MONDO:0013110
  • Disorders of folate metabolism
Tags
Green Green List (high evidence)
GGCX
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • vitamin K-dependent clotting factors, combined deficiency of, type 1 MONDO:0010187
  • Other disorders of vitamin metabolism
Tags
Green Green List (high evidence)
GIF
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Intrinsic factor deficiency MIM#261000
  • Disorders of cobalamin absorption, transport and metabolism
Tags
  • new gene name
Green Green List (high evidence)
HCFC1
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • methylmalonic acidemia with homocystinuria, type cblX MONDO:0010657
  • disorder of cobalamin metabolism
Tags
Green Green List (high evidence)
HLCS
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • Disorders of biotin metabolism
  • holocarboxylase synthetase deficiency MONDO:0009666
Tags
Green Green List (high evidence)
LMBRD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Methylmalonic aciduria and homocystinuria, cblF type MIM#277380
  • Disorders of cobalamin absorption, transport and metabolism
Tags
  • treatable
Green Green List (high evidence)
LRAT
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Leber congenital amaurosis 14
Tags
Green Green List (high evidence)
MCEE
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency MONDO:0009615
Tags
Green Green List (high evidence)
MMAA
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of cobalamin metabolism
  • methylmalonic aciduria, cblA type MONDO:0009613
Tags
Green Green List (high evidence)
MMAB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • methylmalonic aciduria, cblB type MONDO:0009614
Tags
Green Green List (high evidence)
MMACHC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Methylmalonic aciduria and homocystinuria, cblC type MIM#277400
  • Disorders of cobalamin absorption, transport and metabolism
Tags
  • treatable
Green Green List (high evidence)
MMADHC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Homocystinuria, cblD type, variant 1 MIM#277410
  • Methylmalonic aciduria and homocystinuria, cblD type MIM#277410
  • Methylmalonic aciduria, cblD type, variant 2 MIM#277410
  • Disorders of cobalamin absorption, transport and metabolism
Tags
  • treatable
Green Green List (high evidence)
MTHFD1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Combined immunodeficiency and megaloblastic anemia with or without hyperhomocysteinemia MONDO:0060611
  • Disorders of folate metabolism
Tags
Green Green List (high evidence)
MTHFR
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Homocystinuria due to methylene tetrahydrofolate reductase deficiency MONDO:0009353
  • Disorders of folate metabolism
Tags
Green Green List (high evidence)
MTR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Homocystinuria-megaloblastic anemia, cblG complementation type MIM#250940
  • Organic aciduria
Tags
Green Green List (high evidence)
MTRR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • Homocystinuria-megaloblastic anemia, cbl E type MIM#236270
  • Disorders of the metabolism of sulphur amino acids
Tags
Green Green List (high evidence)
MUT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • methylmalonic aciduria due to methylmalonyl-CoA mutase deficiency MONDO:0009612
Tags
Green Green List (high evidence)
NADK2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of niacin and NAD metabolism
  • 2,4-dienoyl-CoA reductase deficiency, MIM# 616034
Tags
Green Green List (high evidence)
NAXD
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of niacin and NAD metabolism
  • Mitochondrial disease MONDO:0044970
Tags
Green Green List (high evidence)
NAXE
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Apolipoprotein A-I binding protein deficiency
  • Disorders of niacin and NAD metabolism
Tags
Green Green List (high evidence)
NMNAT1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of niacin and NAD metabolism
  • Leber congenital amaurosis 9 MONDO:0012056
Tags
Green Green List (high evidence)
NNT
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of niacin and NAD metabolism
  • glucocorticoid deficiency 4 MONDO:0013874
Tags
Green Green List (high evidence)
PANK2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • pantothenate kinase-associated neurodegeneration MONDO:0009319
  • Disorders of pantothenate and CoA metabolism
Tags
Green Green List (high evidence)
PLPBP
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • pyridoxine-dependent epilepsy MONDO:0009945
  • Disorders of pyridoxine metabolism
Tags
Green Green List (high evidence)
PNPO
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Pyridoxal phosphate-responsive seizures MONDO:0012407
  • Disorders of pyridoxine metabolism
Tags
Green Green List (high evidence)
PRDX1
1 review
1 green
Other
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • methylmalonic aciduria and homocystinuria type cblC MONDO:0010184
Tags
  • digenic
Green Green List (high evidence)
RBP4
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Other disorders of vitamin metabolism
  • microphthalmia, isolated, with coloboma 10 MONDO:0014635
Tags
Green Green List (high evidence)
RDH12
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Leber congenital amaurosis 13 MONDO:0012990
  • Other disorders of vitamin metabolism
Tags
Green Green List (high evidence)
RDH5
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Fundus albipunctatus
  • Other disorders of vitamin metabolism
Tags
Green Green List (high evidence)
RLBP1
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Other disorders of vitamin metabolism
  • RLBP1-related retinopathy MONDO:0100444
Tags
Green Green List (high evidence)
RPE65
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of vitamin A metabolism
  • RPE65-related recessive retinopathy MONDO:0100368
Tags
Green Green List (high evidence)
SLC25A32
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Exercise intolerance, riboflavin-responsive, MONDO:0014795
  • Disorders of riboflavin metabolism
Tags
Green Green List (high evidence)
SLC2A10
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Arterial tortuosity syndrome MONDO:0008818
  • Other disorders of vitamin metabolism
Tags
Green Green List (high evidence)
SLC46A1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Hereditary folate malabsorption MONDO:0009238
  • Disorders of folate metabolism
Tags
Green Green List (high evidence)
SLC52A2
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Brown-Vialetto-van Laere syndrome 2 MONDO:0013867
  • Disorders of riboflavin metabolism
Tags
Green Green List (high evidence)
SLC52A3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of riboflavin metabolism
  • Brown-Vialetto-van Laere syndrome 1 MONDO:0024537
Tags
Green Green List (high evidence)
TCN2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Literature
Phenotypes
  • Transcobalamin II deficiency, 275350
Tags
Green Green List (high evidence)
UBIAD1
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
Phenotypes
  • Schnyder corneal dystrophy MONDO:0007374 MIM#611632
  • Other disorders of vitamin metabolism
Tags
Green Green List (high evidence)
VDR
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • vitamin D-dependent rickets, type 2A MONDO:0010186, Other disorders of vitamin metabolism
Tags
Green Green List (high evidence)
VKORC1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • vitamin K-dependent clotting factors, combined deficiency of, type 2 MONDO:0011837
  • Other disorders of vitamin metabolism
Tags
Amber Amber List (moderate evidence)
CD320
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Methylmalonic acidemia due to transcobalamin receptor defect MONDO:0013341
Tags
Amber Amber List (moderate evidence)
STRA6
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Matthew-Wood syndrome MONDO:0011010
  • Other disorders of vitamin metabolism
Tags
Amber Amber List (moderate evidence)
TCN1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • transcobalamin I deficiency MONDO:0008659
Tags
Amber Amber List (moderate evidence)
ZNF143
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Amber
  • Expert Review Red
  • Literature
Phenotypes
  • methylmalonic aciduria and homocystinuria MONDO:0016826
Tags
Red Red List (low evidence)
ALDH1A3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • Isolated microphthalmia 8 MONDO:0014050
  • Other disorders of vitamin metabolism
Tags
Red Red List (low evidence)
ALPL
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert review Green
Phenotypes
  • disorder of bone metabolism
  • Hypophosphatasia
  • Disorders of pyridoxine metabolism
Tags
Red Red List (low evidence)
BCO1
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
Phenotypes
  • Other disorders of vitamin metabolism
  • hereditary hypercarotenemia and vitamin A deficiency MONDO:0007272
Tags
Red Red List (low evidence)
EPHX1
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • Familial hypercholanemia MONDO:0011905
  • Other disorders of vitamin metabolism
Tags
Red Red List (low evidence)
RBP3
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • Retinitis pigmentosa 66 MONDO:0014093
  • Other disorders of vitamin metabolism
Tags
Red Red List (low evidence)
THAP11
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Red
  • Literature
Phenotypes
  • Methylmalonic aciduria, cblC type-like, MIM# 620940
  • Inborn disorder of cobalamin metabolism and transport, MONDO:0019220, THAP11-related
Tags
Red Red List (low evidence)
TTPA
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review green
Phenotypes
  • familial isolated deficiency of vitamin E MONDO:0010188
  • Other disorders of vitamin metabolism
Tags

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