1. Panels
  2. Liverome Superpanel

Liverome Superpanel (Version 2.0)

Level 2: Gastroenterological disorders

Relevant disorders: Abnormality of the liver, HP:0001392
This panel contains these 4 panels:
Liver Failure_Paediatric v1.24
Polycystic liver disease v1.8
Cholestasis v1.0
Haem degradation and bilirubin metabolism defects v0.17
Panel types: Melbourne Genomics, Victorian Clinical Genetics Services, Royal Melbourne Hospital
Description
This panel contains genes associated with liver disease. It was created for use in the Melbourne Genomics Transplant Clinical Change Project.

200 Entities

185 reviewed, 138 green

List Entity Reviews Mode of inheritance Details
200 Entitiess
Green List (high evidence)
ABCB11
Cholestasis v1.0
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cholestasis, benign recurrent intrahepatic, 2, MIM# 605479 AR
  • Cholestasis, progressive familial intrahepatic 2, MIM# 601847 AR
Tags
Green List (high evidence)
ABCB11
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • progressive familial intrahepatic cholestasis type 2 MONDO:0011156
  • Disorders of bile acid metabolism
Tags
Green List (high evidence)
ABCB11
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cholestasis, progressive familial intrahepatic 2, MIM# 601847
Tags
Green List (high evidence)
ABCB4
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cholestasis, progressive familial intrahepatic 3, MIM# 602347
Tags
Green List (high evidence)
ABCB4
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of bile acid metabolism
  • progressive familial intrahepatic cholestasis type 3 MONDO:0011214
Tags
Green List (high evidence)
ABCB4
Cholestasis v1.0
2 reviews
2 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cholestasis, progressive familial intrahepatic 3 MIM#602347
  • disorder of bile acid metabolism
  • Cholestasis, intrahepatic, of pregnancy, 3 (MIM#614972)
  • Gallbladder disease 1 (MIM#600803)
Tags
Green List (high evidence)
ABCC2
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Dubin-Johnson syndrome, MIM# 237500
Tags
Green List (high evidence)
ABCC2
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of haem degradation and bilirubin metabolism
  • Dubin-Johnson syndrome MONDO:0009380
Tags
Green List (high evidence)
ACADM
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Acyl-CoA dehydrogenase, medium chain, deficiency of, MIM# 201450
Tags
  • treatable
Green List (high evidence)
ADK
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Hypermethioninemia due to adenosine kinase deficiency, MIM# 614300
Tags
Green List (high evidence)
AKR1D1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Bile acid synthesis defect, congenital, 2, MIM# 235555
Tags
  • treatable
Green List (high evidence)
AKR1D1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Bile acid synthesis defect, congenital, 2, MIM# 235555
Tags
  • treatable
Green List (high evidence)
ALAD
Haem degradation and bilirubin metabolism defects v0.17
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Porphyria, acute hepatic 612740
  • {Lead poisoning, susceptibility to} 612740
  • Acute hepatic porphyria (Acute neuropathic porphyrias)
Tags
Green List (high evidence)
ALAS2
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Protoporphyria, erythropoietic, X-linked, 300752
  • Anemia, sideroblastic, X-linked, 300751
Tags
Green List (high evidence)
ALDOB
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Fructose intolerance, hereditary, MIM# 229600
Tags
  • treatable
Green List (high evidence)
ALDOB
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Fructose intolerance, hereditary, MIM# 229600
Tags
  • treatable
Green List (high evidence)
ALG5
Polycystic liver disease v1.8
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Polycystic kidney disease 7, MIM# 620056
  • Multiple small kidney cysts, progressive interstitial fibrosis, and kidney function decline
Tags
Green List (high evidence)
ALG8
Polycystic liver disease v1.8
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic liver disease 3 with or without kidney cysts, MIM# 617874
Tags
Green List (high evidence)
ALMS1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Alstrom syndrome, MIM# 203800
Tags
Green List (high evidence)
AMACR
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Bile acid synthesis defect, congenital, 4, MIM# 214950
Tags
Green List (high evidence)
AMACR
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Bile acid synthesis defect, congenital, 4, MIM# 214950
Tags
Green List (high evidence)
ATP6AP1
Liver Failure_Paediatric v1.24
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Immunodeficiency 47, MIM# 300972
Tags
Green List (high evidence)
ATP6AP2
Liver Failure_Paediatric v1.24
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Congenital disorder of glycosylation, type IIr, MIM# 301045
Tags
Green List (high evidence)
ATP7B
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Wilson disease, MIM# 277900
Tags
Green List (high evidence)
ATP7B
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Wilson disease, MIM#277900
Tags
Green List (high evidence)
ATP8B1
Cholestasis v1.0
1 review
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cholestasis, progressive familial intrahepatic 1, MIM# 211600
  • Cholestasis, benign recurrent intrahepatic, MIM# 243300
  • Cholestasis, intrahepatic, of pregnancy, 1, MIM# 147480
Tags
Green List (high evidence)
ATP8B1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cholestasis, progressive familial intrahepatic 1, MIM# 211600
Tags
Green List (high evidence)
ATP8B1
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • progressive familial intrahepatic cholestasis type 1 MONDO:0008892
  • Disorders of bile acid metabolism
Tags
Green List (high evidence)
BAAT
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Bile acid conjugation defect 1, MIM# 619232
Tags
Green List (high evidence)
BCS1L
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • GRACILE syndrome, MIM# 603358
  • Mitochondrial complex III deficiency, nuclear type 1 , MIM#112400
Tags
Green List (high evidence)
BCS1L
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • GRACILE syndrome, MIM# 603358
  • Mitochondrial complex III deficiency, nuclear type 1 , MIM#112400
Tags
Green List (high evidence)
CC2D2A
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • COACH syndrome 2, MIM# 619111
  • Meckel syndrome 6, MIM#612284
Tags
Green List (high evidence)
CCDC115
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Congenital disorder of glycosylation, type IIo, MIM# 616828
Tags
Green List (high evidence)
CLDN1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Ichthyosis, leukocyte vacuoles, alopecia, and sclerosing cholangitis MIM#607626
Tags
Green List (high evidence)
COG7
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Congenital disorder of glycosylation, type IIe , MIM#608779
Tags
Green List (high evidence)
CPOX
Haem degradation and bilirubin metabolism defects v0.17
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Coproporphyria 121300
  • Hereditary coproporphyria (Acute neuropathic porphyrias)
  • Harderoporphyria 121300
Tags
Green List (high evidence)
CPT2
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • CPT II deficiency, infantile, MIM# 600649
Tags
  • treatable
Green List (high evidence)
CYB5R3
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of haem degradation and bilirubin metabolism
  • methemoglobinemia due to deficiency of methemoglobin reductase MONDO:0009606
Tags
Green List (high evidence)
CYP27A1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cerebrotendinous xanthomatosis, MIM# 213700
Tags
Green List (high evidence)
CYP7B1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Bile acid synthesis defect, congenital, 3, MIM# 613812
Tags
Green List (high evidence)
CYP7B1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Bile acid synthesis defect, congenital, 3, MIM# 613812
Tags
Green List (high evidence)
DCDC2
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Sclerosing cholangitis, neonatal, MIM# 617394
Tags
Green List (high evidence)
DGUOK
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial DNA depletion syndrome 3 (hepatocerebral type), MIM# 251880
Tags
Green List (high evidence)
DGUOK
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Mitochondrial DNA depletion syndrome 3 (hepatocerebral type), MIM#251880
Tags
Green List (high evidence)
DNAJB11
Polycystic liver disease v1.8
1 review
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic kidney disease 6 with or without polycystic liver disease (618061)
  • Ivermark II syndrome
Tags
Green List (high evidence)
FAH
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Tyrosinaemia, type I, MIM# 276700
Tags
  • treatable
Green List (high evidence)
FAH
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Tyrosinemia, type I, MIM#276700
Tags
  • treatable
Green List (high evidence)
FECH
Haem degradation and bilirubin metabolism defects v0.17
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Protoporphyria, erythropoietic, autosomal recessive, 177000
Tags
  • deep intronic
  • SV/CNV
Green List (high evidence)
FH
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Fumarase deficiency, MIM#606812
Tags
Green List (high evidence)
FOCAD
Liver Failure_Paediatric v1.24
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Liver disease, severe congenital, MIM# 619991
Tags
Green List (high evidence)
FOCAD
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review
Phenotypes
  • Liver disease, severe congenital, MIM# 619991
Tags
Green List (high evidence)
GALM
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • type IV galactosaemia
Tags
Green List (high evidence)
GALT
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Galactosemia, MIM# 230400
Tags
  • treatable
Green List (high evidence)
GALT
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Galactosaemia, MIM#230400
Tags
  • treatable
Green List (high evidence)
GANAB
Polycystic liver disease v1.8
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic kidney disease 3 (600666)
Tags
Green List (high evidence)
GBA
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Gaucher disease
Tags
Green List (high evidence)
GBE1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Glycogen storage disease IV, MIM# 232500
Tags
Green List (high evidence)
GBE1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Glycogen storage disease IV, MIM# 232500
Tags
Green List (high evidence)
GFM1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Combined oxidative phosphorylation deficiency 1, MIM# 609060
Tags
Green List (high evidence)
HADHA
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Mitochondrial trifunctional protein deficiency, MIM# 609015
Tags
  • treatable
Green List (high evidence)
HADHB
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Trifunctional protein deficiency, MIM# 609015
Tags
  • treatable
Green List (high evidence)
HMBS
Haem degradation and bilirubin metabolism defects v0.17
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Porphyria, acute intermittent, 176000
  • Porphyria, acute intermittent, nonerythroid variant, 176000
Tags
Green List (high evidence)
HMOX1
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of haem degradation and bilirubin metabolism
  • heme oxygenase 1 deficiency MONDO:0013536
Tags
Green List (high evidence)
HNF1B
Cholestasis v1.0
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal cysts and diabetes syndrome, MIM# 137920
Tags
Green List (high evidence)
HSD3B7
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Bile acid synthesis defect, congenital, 1 MIM#607765
Tags
  • treatable
Green List (high evidence)
HSD3B7
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Bile acid synthesis defect, congenital, 1, MIM# 607765
Tags
Green List (high evidence)
IARS
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Growth retardation, impaired intellectual development, hypotonia, and hepatopathy, MIM# 617093
Tags
Green List (high evidence)
JAG1
Cholestasis v1.0
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Alagille syndrome, MIM#118450
Tags
Green List (high evidence)
JAG1
Liver Failure_Paediatric v1.24
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Alagille syndrome, MIM# 118450
Tags
Green List (high evidence)
KIF12
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cholestasis, progressive familial intrahepatic, 8, MIM# 619662
Tags
Green List (high evidence)
LARS
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Infantile liver failure syndrome 1, MIM# 615438
Tags
Green List (high evidence)
LIPA
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cholesteryl ester storage disease, MIM# 278000
  • Wolman disease, MIM# 278000
Tags
  • treatable
Green List (high evidence)
LRP5
Polycystic liver disease v1.8
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic liver disease 4 with or without kidney cysts (617875)
Tags
Green List (high evidence)
MARS
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Interstitial lung and liver disease, MIM#615486
Tags
Green List (high evidence)
MED12
Liver Failure_Paediatric v1.24
2 reviews
2 green
Other
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Hardikar syndrome, MIM# 301068
Tags
Green List (high evidence)
MPI
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Congenital disorder of glycosylation, type Ib, MIM# 602579
Tags
Green List (high evidence)
MPV17
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial DNA depletion syndrome 6 (hepatocerebral type), MIM# 256810
Tags
Green List (high evidence)
MPV17
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Mitochondrial DNA depletion syndrome 6 (hepatocerebral type), MIM# 256810
Tags
Green List (high evidence)
MYO5B
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cholestasis
  • Microvillus inclusion disease, MIM#251850
Tags
Green List (high evidence)
NBAS
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Infantile liver failure syndrome 2, MIM# 616483
Tags
Green List (high evidence)
NOTCH2
Cholestasis v1.0
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Alagille syndrome 2 (MIM#610205)
Tags
Green List (high evidence)
NOTCH2
Liver Failure_Paediatric v1.24
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Alagille syndrome 2, MIM# 610205
Tags
Green List (high evidence)
NPC1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Niemann-Pick disease, MIM# 257220
Tags
Green List (high evidence)
NPC1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Niemann-Pick disease, MIM# 257220
Tags
Green List (high evidence)
NPC2
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Niemann-pick disease, type C2 MIM#607625
Tags
Green List (high evidence)
NPHP3
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal-hepatic-pancreatic dysplasia 1, MIM# 208540
Tags
Green List (high evidence)
NR1H4
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of bile acid metabolism
  • cholestasis, progressive familial intrahepatic, 5 MONDO:0014884
Tags
Green List (high evidence)
NR1H4
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cholestasis, progressive familial intrahepatic, 5, MIM# 617049
Tags
Green List (high evidence)
NR1H4
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cholestasis, progressive familial intrahepatic, 5, MIM# 617049
Tags
Green List (high evidence)
OTC
Liver Failure_Paediatric v1.24
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Ornithine transcarbamylase deficiency, MIM# 311250
Tags
Green List (high evidence)
PEX1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 1A (Zellweger), MIM# 214100
Tags
Green List (high evidence)
PEX12
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 3A (Zellweger) (MIM#614859)
Tags
Green List (high evidence)
PEX2
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 5A (Zellweger) MIM#614866
Tags
Green List (high evidence)
PEX26
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 7A (Zellweger) MIM#614872
Tags
Green List (high evidence)
PEX6
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 4A (Zellweger) (MIM#614862)
Tags
Green List (high evidence)
PHKG2
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review
Phenotypes
  • Glycogen storage disease IXc, MIM# 613027
Tags
Green List (high evidence)
PKD1
Polycystic liver disease v1.8
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic Kidney Disease 1 with or without polycystic liver disease (173900)
Tags
Green List (high evidence)
PKD2
Polycystic liver disease v1.8
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic Kidney Disease 2 with or without polycystic liver disease (613095)
Tags
Green List (high evidence)
PKHD1
Polycystic liver disease v1.8
2 reviews
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic kidney disease 4 with or without hepatic disease (263200)
Tags
Green List (high evidence)
PKHD1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Polycystic kidney disease 4, with or without hepatic disease, MIM# 263200
Tags
Green List (high evidence)
POLG
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Mitochondrial DNA depletion syndrome 4A (Alpers type), MIM# 203700
Tags
Green List (high evidence)
PPOX
Haem degradation and bilirubin metabolism defects v0.17
2 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Porphyria variegata, MIM# 176200
  • Variegate porphyria, childhood-onset, MIM# 620483
Tags
Green List (high evidence)
PRKCSH
Polycystic liver disease v1.8
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic Liver Disease 1 with or without kidney cysts (174050)
Tags
Green List (high evidence)
PSKH1
Cholestasis v1.0
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Cholestasis, progressive familial intrahepatic, 13, MIM# 620962
Tags
Green List (high evidence)
PYGL
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Glycogen storage disease VI, MIM# 232700
Tags
Green List (high evidence)
RINT1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Infantile liver failure syndrome 3, MIM# 618641
Tags
Green List (high evidence)
SCYL1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Spinocerebellar ataxia, autosomal recessive 21, MIM#616719
Tags
Green List (high evidence)
SEC63
Polycystic liver disease v1.8
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Polycystic Liver Disease 2 with or without kidney cysts (617004)
Tags
Green List (high evidence)
SERAC1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome, MIM# 614739
Tags
Green List (high evidence)
SERPINA1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Emphysema due to AAT deficiency, MIM#613490
  • Emphysema-cirrhosis, due to AAT deficiency, MIM#613490
  • Hemorrhagic diathesis due to antithrombin Pittburgh, MIM#613490
  • alpha 1-antitrypsin deficiency, MONDO#0013282
Tags
Green List (high evidence)
SH2D1A
Liver Failure_Paediatric v1.24
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Lymphoproliferative syndrome, X-linked, 1, MIM# 308240
Tags
Green List (high evidence)
SKIV2L
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Trichohepatoenteric syndrome 2, MIM# 614602
  • Respiratory infections
  • IUGR
  • Facial dysmorphic features
  • Wooly hair
  • Early-onset intractable diarrhoea
  • Liver cirrhosis
  • Platelet abnormalities
Tags
Green List (high evidence)
SLC25A13
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Citrullinemia, type II, neonatal-onset, MIM# 605814
Tags
Green List (high evidence)
SLC25A13
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Citrullinemia, type II, neonatal-onset, MIM# 605814
Tags
Green List (high evidence)
SLC30A10
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Hypermanganesemia with dystonia 1, MIM# 613280
Tags
Green List (high evidence)
SLC37A4
Liver Failure_Paediatric v1.24
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Congenital disorder of glycosylation
Tags
Green List (high evidence)
SLCO1B1
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
Other
Sources
  • Expert Review Green
Phenotypes
  • Rotor syndrome MONDO:0009379 (MIM#237450), Disorders of bilirubin metabolism and biliary transport
Tags
Green List (high evidence)
SLCO1B3
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
Other
Sources
  • Expert Review Green
Phenotypes
  • Rotor syndrome MONDO:0009379 (MIM#237450), Disorders of bilirubin metabolism and biliary transport
Tags
Green List (high evidence)
STN1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Cerebroretinal microangiopathy with calcification and cysts 2, MIM#617341
Tags
Green List (high evidence)
TALDO1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Transaldolase deficiency, MIM# 606003
Tags
Green List (high evidence)
TALDO1
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Transaldolase deficiency, MIM#606003
Tags
Green List (high evidence)
TJP2
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cholestasis, progressive familial intrahepatic 4, MIM# 615878
Tags
Green List (high evidence)
TJP2
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cholestasis, progressive familial intrahepatic 4, MIM# 615878
Tags
Green List (high evidence)
TRMU
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Liver failure, transient infantile, MIM# 613070
Tags
Green List (high evidence)
TTC26
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Biliary, renal, neurologic, and skeletal syndrome, MIM# 619534
  • Ciliopathy Syndrome with Biliary, Renal, Neurological, and Skeletal Manifestations
Tags
Green List (high evidence)
TTC37
Liver Failure_Paediatric v1.24
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Trichohepatoenteric syndrome 1, MIM# 222470
Tags
Green List (high evidence)
TULP3
Liver Failure_Paediatric v1.24
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Hepatorenocardiac degenerative fibrosis, MIM# 619902
Tags
Green List (high evidence)
UGT1A1
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • Disorders of haem degradation and bilirubin metabolism
  • Crigler-Najjar syndrome type 1 MONDO:0021020, Crigler-Najjar syndrome type 2 MONDO:0011725
Tags
Green List (high evidence)
UGT1A1
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Crigler-Najjar syndrome, type I MIM#218800
  • Crigler-Najjar syndrome, type II MIM#606785
Tags
Green List (high evidence)
UNC45A
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Osteootohepatoenteric syndrome, MIM# 619377
  • Cholestasis
  • Diarrhoea
  • Bone fragility
  • Impaired hearing
Tags
Green List (high evidence)
UROD
Haem degradation and bilirubin metabolism defects v0.17
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Porphyria cutanea tarda (Porphyrias with erosive photodermatosis)
Tags
Green List (high evidence)
UROS
Haem degradation and bilirubin metabolism defects v0.17
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Royal Melbourne Hospital
Phenotypes
  • Porphyrias with erosive photodermatosis
  • Porphyria, congenital erythropoietic 263700
Tags
Green List (high evidence)
USP53
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Cholestasis, progressive familial intrahepatic, 7, with or without hearing loss, MIM# 619658
Tags
Green List (high evidence)
VIPAS39
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Arthrogryposis, renal dysfunction, and cholestasis 2, MIM#613404
Tags
Green List (high evidence)
VPS33B
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Arthrogryposis, renal dysfunction, and cholestasis 1 (MIM#208085)
Tags
Green List (high evidence)
VPS50
Cholestasis v1.0
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder with microcephaly, seizures, and neonatal cholestasis , MIM#619685
  • Neonatal cholestatic liver disease
  • Failure to thrive
  • Profound global developmental delay
  • Postnatal microcephaly
  • Seizures
  • Abnormality of the corpus callosum
Tags
Green List (high evidence)
WDR83OS
Cholestasis v1.0
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder with variable familial hypercholanemia, MIM# 621016
Tags
Green List (high evidence)
ZFYVE19
Cholestasis v1.0
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Cholestasis
Tags
Amber List (moderate evidence)
ABCD3
Liver Failure_Paediatric v1.24
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Bile acid synthesis defect, congenital, 5 (MIM#616278)
Tags
Amber List (moderate evidence)
ALG9
Polycystic liver disease v1.8
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Polycystic liver and kidney disease
Tags
Amber List (moderate evidence)
BLVRA
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Disorders of haem degradation and bilirubin metabolism
  • hyperbiliverdinemia MONDO:0013595
Tags
Amber List (moderate evidence)
CFTR
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Cystic fibrosis, MIM# 219700
Tags
Amber List (moderate evidence)
CYB5A
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
Phenotypes
  • Disorders of haem degradation and bilirubin metabolism
  • methemoglobinemia type 4 MONDO:0009605
Tags
Amber List (moderate evidence)
DHCR7
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Smith-Lemli-Opitz syndrome, MIM# 270400
Tags
Amber List (moderate evidence)
GATA1
Haem degradation and bilirubin metabolism defects v0.17
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Amber
  • Royal Melbourne Hospital
Phenotypes
  • Thrombocytopenia, X-linked, with or without dyserythropoietic anemia, 300367
  • Congenital erythropoietic porphyria
Tags
Amber List (moderate evidence)
IARS
Cholestasis v1.0
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Growth retardation, impaired intellectual development, hypotonia, and hepatopathy, MIM#617093
Tags
  • new gene name
Amber List (moderate evidence)
LARS
Cholestasis v1.0
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • NHS GMS
Phenotypes
  • Infantile liver failure syndrome 1, MIM# 615438
Tags
  • new gene name
Amber List (moderate evidence)
LIPA
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Cholesteryl ester storage disease, MIM# 278000
  • Wolman disease, MIM# 278000
Tags
Amber List (moderate evidence)
LSR
Cholestasis v1.0
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • transient neonatal cholestasis
  • intellectual disability
  • short stature
Tags
Amber List (moderate evidence)
MMP15
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Cholestasis
  • Congenital heart disease
Tags
Amber List (moderate evidence)
MPI
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Congenital disorder of glycosylation, type Ib, MIM# 602579
Tags
Amber List (moderate evidence)
MRM2
Liver Failure_Paediatric v1.24
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Mitochondrial DNA depletion syndrome 17, MIM# 618567
Tags
Amber List (moderate evidence)
MTM1
Liver Failure_Paediatric v1.24
2 reviews
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Myopathy, centronuclear, X-linked, MIM# 310400
Tags
Amber List (moderate evidence)
PEX14
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 13A (Zellweger), MIM# 614887
Tags
Amber List (moderate evidence)
PLEC
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Progressive familial intrahepatic cholestasis, MONDO:0015762, PLEC-related
Tags
Amber List (moderate evidence)
POLG2
Liver Failure_Paediatric v1.24
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Mitochondrial DNA depletion syndrome 16 (hepatic type), MIM# 618528
  • Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant, MIM# 4 610131
Tags
Amber List (moderate evidence)
SEC16B
Polycystic liver disease v1.8
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Expert Review
Phenotypes
  • Polycystic liver disease (with or without kidney cysts), MONDO:0000447, SEC16B-related
Tags
Amber List (moderate evidence)
SEC61B
Polycystic liver disease v1.8
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Polycystic liver disease with or without renal cysts
Tags
Amber List (moderate evidence)
SEMA7A
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Cholestasis, progressive familial intrahepatic, 11 , MIM# 619874
Tags
Amber List (moderate evidence)
TFAM
Liver Failure_Paediatric v1.24
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Mitochondrial DNA depletion syndrome 15 (hepatocerebral type) MIM#617156
Tags
Amber List (moderate evidence)
TKFC
Liver Failure_Paediatric v1.24
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Triokinase and FMN cyclase deficiency syndrome, MIM#618805
  • Developmental delay
  • cataracts
  • liver dysfunction
Tags
Amber List (moderate evidence)
TRMU
Cholestasis v1.0
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Liver failure, transient infantile, MIM# 613070
Tags
Amber List (moderate evidence)
YKT6
Liver Failure_Paediatric v1.24
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Syndromic disease, MONDO:0002254, YKT6-related
Tags
Red List (low evidence)
ABCB6
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
Phenotypes
  • familial pseudohyperkalemia MONDO:0012204
  • Disorders of heme synthesis and porphyrias
Tags
Red List (low evidence)
ABCG5
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Sitosterolemia 2, MIM# 618666
Tags
Red List (low evidence)
ABCG8
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Sitosterolemia 1, MIM# 210250
Tags
Red List (low evidence)
ARG1
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Argininemia, MIM# 207800
Tags
Red List (low evidence)
COQ2
Liver Failure_Paediatric v1.24
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Expert list
Phenotypes
  • Coenzyme Q10 deficiency, primary, 1, MIM#607426
Tags
Red List (low evidence)
CYC1
Liver Failure_Paediatric v1.24
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Expert list
Phenotypes
  • Mitochondrial complex III deficiency, nuclear type 6, MIM# 615453
Tags
Red List (low evidence)
HADHA
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • LCHAD deficiency, MIM# 609016
  • Mitochondrial trifunctional protein deficiency, MIM# 609015
Tags
Red List (low evidence)
HAMP
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Hemochromatosis, type 2B, MIM# 613313
Tags
Red List (low evidence)
HFE
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Hemochromatosis, MIM# 235200
Tags
Red List (low evidence)
HFE
Haem degradation and bilirubin metabolism defects v0.17
2 reviews
2 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Royal Melbourne Hospital
Phenotypes
  • {Porphyria cutanea tarda, susceptibility to}, 176100
  • {Porphyria variegata, susceptibility to}, 176200
Tags
Red List (low evidence)
HFE2
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Hemochromatosis, type 2A, MIM# 602390
Tags
  • new gene name
Red List (low evidence)
IL18BP
Liver Failure_Paediatric v1.24
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Expert list
Phenotypes
  • {?Hepatitis, fulminant viral, susceptibility to} 618549
Tags
Red List (low evidence)
INVS
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Nephronophthisis 2, infantile, MIM# 602088
Tags
Red List (low evidence)
MKS1
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Meckel syndrome 1, MIM# 249000
Tags
Red List (low evidence)
MVK
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Mevalonic aciduria, MIM# 610377
Tags
Red List (low evidence)
NPHP1
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 4 609583
  • Nephronophthisis 1, juvenile ,MIM# 256100
  • Senior-Loken syndrome-1 , MIM#266900
Tags
Red List (low evidence)
NPHP4
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Nephronophthisis 4, MIM# 606966
  • Senior-Loken syndrome 4, MIM# 606996
Tags
Red List (low evidence)
PEX10
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 6A (Zellweger), MIM# 614870
Tags
Red List (low evidence)
PEX11B
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 14B, MIM# 614920
Tags
Red List (low evidence)
PEX13
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 11A (Zellweger), MIM# 614883
Tags
Red List (low evidence)
PEX16
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 13A (Zellweger), MIM# 614887
Tags
Red List (low evidence)
PEX19
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 8A (Zellweger), MIM# 614876
Tags
Red List (low evidence)
PEX3
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 12A (Zellweger), MIM# 614886
Tags
Red List (low evidence)
PEX5
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 10A (Zellweger), MIM# 614882
Tags
Red List (low evidence)
PEX7
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Peroxisome biogenesis disorder 2A (Zellweger), MIM# 214110
Tags
Red List (low evidence)
POLG
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Mitochondrial DNA depletion syndrome 4A (Alpers type), MIM# 203700
Tags
Red List (low evidence)
PPM1F
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • sclerosing cholangitis
  • short stature
  • hypothyroidism
  • abnormal tongue pigmentatio
Tags
Red List (low evidence)
PTF1A
Liver Failure_Paediatric v1.24
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Expert list
Phenotypes
  • Pancreatic agenesis 2, MIM# 615935
Tags
Red List (low evidence)
SLC10A2
Haem degradation and bilirubin metabolism defects v0.17
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
Phenotypes
  • bile acid malabsorption, primary, 1 MONDO:0013214
  • Disorders of bile acid metabolism
Tags
Red List (low evidence)
SLC27A5
Cholestasis v1.0
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Disorder of bile acid metabolism
Tags
Red List (low evidence)
SLC30A10
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Hypermanganesemia with dystonia 1, MIM# 613280
Tags
Red List (low evidence)
SLC40A1
Cholestasis v1.0
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Hemochromatosis, type 4, MIM# 606069
Tags
Red List (low evidence)
SLC51A
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Cholestasis, progressive familial intrahepatic, 6, MIM# 619484
Tags
Red List (low evidence)
SLC51B
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Bile acid malabsorption, primary, 2, MIM# 619481
  • Congenital diarrhoea
  • Cholestasis
Tags
Red List (low evidence)
SMPD1
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Niemann-Pick disease
Tags
Red List (low evidence)
TFR2
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Haemochromatosis, type 3 (MIM#604250)
Tags
Red List (low evidence)
TMEM216
Cholestasis v1.0
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Meckel syndrome 2, MIM# 603194
Tags

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