1. Panels
  2. Aminoacidopathy

Aminoacidopathy (Version 1.133)

Level 2: Metabolic disorders

Relevant disorders: Abnormality of amino acid metabolism, HP:0004337
Panel types: Victorian Clinical Genetics Services, Royal Melbourne Hospital, Rare Disease
Description
This panel contains genes associated with inborn errors in the metabolism of amino acids. It has been aligned with the classifications by the ClinGen Aminoacidopathy GCEP.

This panel is a component of the Metabolic Disorders Superpanel.
Panel Activity

10 reviewers

  • Samantha Ayres (Victorian Clinical Genetics Services)

  • Belinda Chong (Victorian Clinical Genetics Services)

  • Teresa Zhao (Victorian Clinical Genetics Services)

  • Krithika Murali (Victorian Clinical Genetics Services)

  • Suliman Khan (Victorian Clinical Genetics Services)

  • Sangavi Sivagnanasundram (Melbourne Health)

  • Elena Savva (Victorian Clinical Genetics Services)

  • Bryony Thompson (Royal Melbourne Hospital)

  • Melanie Marty (Victorian Clinical Genetics Services)

  • Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

134 Entities

134 reviewed, 111 green

List Entity Reviews Mode of inheritance Details
134 Entitiess
Green List (high evidence)
AASS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperlysinemia MONDO:0009388
Tags
Green List (high evidence)
ACAD8
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • isobutyryl-CoA dehydrogenase deficiency MONDO:0012648
Tags
Green List (high evidence)
ACADSB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • 2-methylbutyryl-CoA dehydrogenase deficiency MONDO:0012392
Tags
Green List (high evidence)
ACAT1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • beta-ketothiolase deficiency MONDO:0008760
Tags
  • treatable
Green List (high evidence)
ACSF3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • combined malonic and methylmalonic acidemia MONDO:0013661
Tags
Green List (high evidence)
ACY1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • aminoacylase 1 deficiency MONDO:0012368
Tags
Green List (high evidence)
ADK
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • adenosine kinase deficiency MONDO:0100255
Tags
Green List (high evidence)
AGA
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • Canavan disease MONDO:0010079
Tags
Green List (high evidence)
AHCY
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase MONDO:0013404
Tags
Green List (high evidence)
ALDH18A1
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • P5CS deficiency MONDO:0100126
Tags
Green List (high evidence)
ALDH4A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperprolinemia type 2 MONDO:0009401
Tags
Green List (high evidence)
ALDH6A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • methylmalonate semialdehyde dehydrogenase deficiency MONDO:0013579
Tags
Green List (high evidence)
ALDH7A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • pyridoxine-dependent epilepsy MONDO:0009945
Tags
Green List (high evidence)
AMT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glycine encephalopathy MONDO:0011612
Tags
Green List (high evidence)
ARG1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperargininemia MONDO:0008814
Tags
Green List (high evidence)
ASL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • argininosuccinic aciduria MONDO:0008815
Tags
Green List (high evidence)
ASNS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • congenital microcephaly - severe encephalopathy - progressive cerebral atrophy syndrome MONDO:0014258
Tags
Green List (high evidence)
ASS1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • citrullinemia type I MONDO:0008988
Tags
Green List (high evidence)
AUH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylglutaconic aciduria type 1 MONDO:0009610
Tags
Green List (high evidence)
BCAT2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • hypervalinemia and hyperleucine-isoleucinemia MONDO:0100058
Tags
Green List (high evidence)
BCKDHA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • maple syrup urine disease type 1A MONDO:0023691
Tags
  • treatable
Green List (high evidence)
BCKDHB
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • maple syrup urine disease type 1B MONDO:0023692
Tags
  • treatable
Green List (high evidence)
BCKDK
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • branched-chain keto acid dehydrogenase kinase deficiency MONDO:0013970
Tags
  • treatable
Green List (high evidence)
CA5A
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperammonemic encephalopathy due to carbonic anhydrase VA deficiency MONDO:0014332
Tags
Green List (high evidence)
CBS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • classic homocystinuria MONDO:0009352
Tags
Green List (high evidence)
CLPB
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylglutaconic aciduria with cataracts, neurologic involvement and neutropenia MONDO:0014561
  • 3-methylglutaconic aciduria, type VIIA, autosomal dominant, MIM# 619835
Tags
Green List (high evidence)
CPS1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • carbamoyl phosphate synthetase I deficiency disease MONDO:0009376
Tags
Green List (high evidence)
CTH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • cystathioninuria MONDO:0009058
Tags
Green List (high evidence)
DBT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • maple syrup urine disease MONDO:0009563
Tags
  • treatable
Green List (high evidence)
DHTKD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • 2-aminoadipic 2-oxoadipic aciduria MONDO:0008774
Tags
Green List (high evidence)
DLD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
Phenotypes
  • pyruvate dehydrogenase E3 deficiency MONDO:0009529
Tags
Green List (high evidence)
DNAJC12
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperphenylalaninemia due to DNAJC12 deficiency MONDO:0044304
Tags
Green List (high evidence)
DNAJC19
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • 3-methylglutaconic aciduria type 5 MONDO:0012435
Tags
Green List (high evidence)
FAH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • tyrosinemia type I MONDO:0010161
Tags
Green List (high evidence)
FMO3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • trimethylaminuria MONDO:0011182
Tags
Green List (high evidence)
GAD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • Developmental and epileptic encephalopathy 89, MIM# 619124
Tags
Green List (high evidence)
GAMT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • guanidinoacetate methyltransferase deficiency MONDO:0012999
Tags
Green List (high evidence)
GATM
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • AGAT deficiency MONDO:0012996
Tags
Green List (high evidence)
GCDH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glutaryl-CoA dehydrogenase deficiency MONDO:0009281
Tags
Green List (high evidence)
GCH1
1 review
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • GTP cyclohydrolase I deficiency MONDO:0100184
Tags
Green List (high evidence)
GCLC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Gamma-glutamylcysteine synthetase deficiency MONDO:0009259
  • Disorders of glutathione metabolism
Tags
Green List (high evidence)
GCSH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glycine encephalopathy MONDO:0011612
Tags
Green List (high evidence)
GLDC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • glycine encephalopathy MONDO:0011612
Tags
Green List (high evidence)
GLS
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • Glutaminase deficiency MONDO:0600001
  • Infantile cataract, skin abnormalities, glutamate excess, and impaired intellectual development MONDO:0032685
Tags
Green List (high evidence)
GLUD1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperinsulinism-hyperammonemia syndrome MONDO:0011717
Tags
Green List (high evidence)
GLUL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • congenital brain dysgenesis due to glutamine synthetase deficiency MONDO:0012393
Tags
Green List (high evidence)
GPX4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Spondylometaphyseal dysplasia, Sedaghatian type MONDO:0009593
  • Disorders of glutathione metabolism
Tags
Green List (high evidence)
GRHPR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • primary hyperoxaluria type 2 MONDO:0009824
  • Disorders of glyoxylate and oxalate metabolism
Tags
Green List (high evidence)
GRM6
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • GRM6-related retinopathy MONDO:0800397
Tags
Green List (high evidence)
GSS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • inherited glutathione synthetase deficiency MONDO:0017909
Tags
Green List (high evidence)
HAAO
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • vertebral, cardiac, renal, and limb defects syndrome 1 MONDO:0060554
Tags
Green List (high evidence)
HGD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • alkaptonuria MONDO:0008753
Tags
Green List (high evidence)
HIBCH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-hydroxyisobutyryl-CoA hydrolase deficiency MONDO:0009603
Tags
Green List (high evidence)
HMGCL
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-hydroxy-3-methylglutaric aciduria MONDO:0009520
Tags
  • treatable
Green List (high evidence)
HOGA1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • primary hyperoxaluria type 3 MONDO:0013327
  • Disorders of ornithine, proline and hydroxyproline metabolism
Tags
Green List (high evidence)
HPD
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • tyrosinemia type III MONDO:0010162
  • hawkinsinuria MONDO:0007700
Tags
Green List (high evidence)
IVD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • isovaleric acidemia MONDO:0009475
Tags
  • treatable
Green List (high evidence)
KYNU
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • vertebral, cardiac, renal, and limb defects syndrome 2 MONDO:0060555
Tags
Green List (high evidence)
LMBRD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylmalonic aciduria and homocystinuria type cblF MONDO:0010183
Tags
Green List (high evidence)
MAT1A
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methionine adenosyltransferase deficiency MONDO:0009607
Tags
Green List (high evidence)
MCCC1
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylcrotonyl-CoA carboxylase deficiency MONDO:0018950
Tags
Green List (high evidence)
MCCC2
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylcrotonyl-CoA carboxylase deficiency MONDO:0018950
Tags
Green List (high evidence)
MCEE
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylmalonic acidemia due to methylmalonyl-CoA epimerase deficiency MONDO:0009615
Tags
Green List (high evidence)
MMAA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • methylmalonic aciduria, cblA type MONDO:0009613
Tags
  • treatable
Green List (high evidence)
MMAB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • methylmalonic aciduria, cblB type MONDO:0009614
Tags
  • treatable
Green List (high evidence)
MMACHC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylmalonic aciduria and homocystinuria type cblC MONDO:0010184
Tags
Green List (high evidence)
MMADHC
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • NHS GMS
Phenotypes
  • methylmalonic aciduria and homocystinuria type cblD MONDO:0010185
Tags
  • treatable
Green List (high evidence)
MTHFR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • homocystinuria due to methylene tetrahydrofolate reductase deficiency MONDO:0009353
Tags
Green List (high evidence)
MTR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylcobalamin deficiency type cblG MONDO:0009609
Tags
Green List (high evidence)
MTRR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • methylcobalamin deficiency type cblE MONDO:0009354
Tags
Green List (high evidence)
MUT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • methylmalonic aciduria due to methylmalonyl-CoA mutase deficiency MONDO:0009612
Tags
Green List (high evidence)
NAGS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperammonemia due to N-acetylglutamate synthase deficiency MONDO:0009377
Tags
Green List (high evidence)
NFE2L2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Immunodeficiency, developmental delay, and hypohomocysteinemia MONDO:0060591
  • Disorders of glutathione metabolism
Tags
Green List (high evidence)
OAT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • ornithine aminotransferase deficiency MONDO:0009796
Tags
Green List (high evidence)
OPA3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylglutaconic aciduria type 3 MONDO:0009787
Tags
Green List (high evidence)
OTC
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Other
Phenotypes
  • ornithine carbamoyltransferase deficiency MONDO:0010703
Tags
Green List (high evidence)
PAH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • phenylketonuria MONDO:0009861
Tags
Green List (high evidence)
PCBD1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • pterin-4 alpha-carbinolamine dehydratase 1 deficiency MONDO:0009908
Tags
Green List (high evidence)
PCCA
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • propionic acidemia MONDO:0011628
Tags
  • treatable
Green List (high evidence)
PCCB
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • propionic acidemia MONDO:0011628
Tags
  • treatable
Green List (high evidence)
PEPD
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Prolidase deficiency MONDO:0008221
Tags
Green List (high evidence)
PHGDH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • neurometabolic disorder due to serine deficiency MONDO:0018162
Tags
Green List (high evidence)
PRODH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • hyperprolinemia type 1 MONDO:0009400
Tags
Green List (high evidence)
PSAT1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • neurometabolic disorder due to serine deficiency MONDO:0018162
Tags
Green List (high evidence)
PSPH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • neurometabolic disorder due to serine deficiency MONDO:0018162
Tags
Green List (high evidence)
PTS
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • BH4-deficient hyperphenylalaninemia A MONDO:0009863
Tags
Green List (high evidence)
PYCR1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • autosomal recessive cutis laxa type 2B MONDO:0013051
Tags
Green List (high evidence)
PYCR2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Hypomyelinating leukodystrophy 10 MONDO:0014632
  • Disorders of ornithine, proline and hydroxyproline metabolism
Tags
Green List (high evidence)
QDPR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • dihydropteridine reductase deficiency MONDO:0009862
Tags
Green List (high evidence)
SELENBP1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • extraoral halitosis due to methanethiol oxidase deficiency MONDO:0029144
Tags
Green List (high evidence)
SERAC1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome MONDO:0013875
Tags
Green List (high evidence)
SHMT2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • neurodevelopmental disorder with cardiomyopathy, spasticity, and brain abnormalities MONDO:0030866
Tags
Green List (high evidence)
SLC1A2
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • developmental and epileptic encephalopathy, 41 MONDO:0014916
Tags
Green List (high evidence)
SLC1A3
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • episodic ataxia type 6 MONDO:0012982
Tags
Green List (high evidence)
SLC1A4
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • spastic tetraplegia-thin corpus callosum-progressive postnatal microcephaly syndrome MONDO:0014725
Tags
Green List (high evidence)
SLC25A13
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • citrin deficiency MONDO:0016602
Tags
Green List (high evidence)
SLC25A15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • ornithine translocase deficiency MONDO:0009393 (HHH Syndrome)
Tags
Green List (high evidence)
SLC25A22
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Developmental and epileptic encephalopathy MONDO:0100062
Tags
Green List (high evidence)
SLC38A8
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • foveal hypoplasia - optic nerve decussation defect - anterior segment dysgenesis syndrome MONDO:0012216
Tags
Green List (high evidence)
SLC3A1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • cystinuria MONDO:0009067
Tags
Green List (high evidence)
SLC6A19
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • Hartnup disease MONDO:0009324
Tags
Green List (high evidence)
SLC6A8
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • creatine transporter deficiency MONDO:0010305
Tags
Green List (high evidence)
SLC7A7
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • lysinuric protein intolerance MONDO:0009109
Tags
Green List (high evidence)
SLC7A9
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • cystinuria MONDO:0009067
Tags
Green List (high evidence)
SPR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • dopa-responsive dystonia due to sepiapterin reductase deficiency MONDO:0012994
Tags
Green List (high evidence)
SUOX
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • isolated sulfite oxidase deficiency MONDO:0010089
Tags
Green List (high evidence)
TAT
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • tyrosinemia type II MONDO:0010160
Tags
Green List (high evidence)
TAZ
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • 3-methylglutaconic aciduria MONDO:0017359
Tags
Green List (high evidence)
TH
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • tyrosine hydroxylase deficiency MONDO:0100064
Tags
Green List (high evidence)
TYR
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Green
Phenotypes
  • oculocutaneous albinism type 1 MONDO:0018135
Tags
Green List (high evidence)
XPNPEP3
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Other
Phenotypes
  • Nephronophthisis-like nephropathy 1 MONDO:0013163
Tags
Amber List (moderate evidence)
GSR
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Other
Phenotypes
  • Hemolytic anemia due to glutathione reductase deficiency MONDO:0019531
  • Disorders of glutathione metabolism
Tags
Amber List (moderate evidence)
PPM1K
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Maple syrup urine disease, mild variant MONDO:0014057
Tags
Amber List (moderate evidence)
SLC1A1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Amber
Phenotypes
  • dicarboxylic aminoaciduria MONDO:0009110
Tags
Amber List (moderate evidence)
SLC6A6
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Amber
Phenotypes
  • hypotaurinemic retinal degeneration and cardiomyopathy MONDO:0007777
Tags
Amber List (moderate evidence)
SUGCT
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Amber
Phenotypes
  • glutaric acidemia type 3 MONDO:0009283
Tags
Amber List (moderate evidence)
UROC1
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Amber
Phenotypes
  • urocanic aciduria MONDO:0010167
Tags
Red List (low evidence)
DMGDH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • dimethylglycine dehydrogenase deficiency MONDO:0011610
Tags
Red List (low evidence)
GNMT
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • glycine N-methyltransferase deficiency MONDO:0011698
Tags
Red List (low evidence)
GSTZ1
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • maleylacetoacetate isomerase deficiency MONDO:0060527
Tags
Red List (low evidence)
HAL
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • histidinemia MONDO:0009345
Tags
Red List (low evidence)
HIBADH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • 3-hydroxyisobutyric aciduria MONDO:0009371
Tags
Red List (low evidence)
HYKK
1 review
1 red
Unknown
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • inborn disorder of lysine and hydroxylysine metabolism MONDO:0017351
Tags
Red List (low evidence)
KMO
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • pellagra MONDO:0019975
Tags
Red List (low evidence)
MPST
1 review
1 red
Unknown
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • encephalopathy due to beta-mercaptolactate-cysteine disulfiduria MONDO:0009585
Tags
Red List (low evidence)
NAT8L
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • N-acetylaspartate deficiency MONDO:0013549
Tags
Red List (low evidence)
OPLAH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Other
Phenotypes
  • 5-oxoprolinase deficiency MONDO:0009825
  • Disorders of glutathione metabolism
Tags
Red List (low evidence)
PHYKPL
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • phosphohydroxylysinuria MONDO:0014008
Tags
Red List (low evidence)
PRODH2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • hydroxyprolinemia MONDO:0009374
Tags
Red List (low evidence)
SARDH
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • sarcosinemia MONDO:0010008
Tags
Red List (low evidence)
SLC36A2
1 review
1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • iminoglycinuria MONDO:0009448
Tags
Red List (low evidence)
SLC6A20
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Other
Phenotypes
  • Hyperglycinuria MONDO:0007677
Tags
Red List (low evidence)
SLC7A5
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Other
Phenotypes
  • Large neutral amino acid transporter deficiency (MIM#600182)
Tags
Red List (low evidence)
TDO2
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • ClinGen
  • Expert Review Red
Phenotypes
  • familial hypertryptophanemia MONDO:0010907
Tags

Major version comments

  • 2022-09-02 05:23 Bryony Thompson (Royal Melbourne Hospital) promoted panel to 1.0
    All genes reviewed

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Download lists

  • Whole panel
  • Green list (high evidence)
  • Green and Amber Genes
  • Amber Genes
  • Red list (low evidence)

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