1. Panels
  2. Limb and Digital Malformations SuperPanel

Limb and Digital Malformations SuperPanel (Version 0.88)

Level 2: Dysmorphic and congenital abnormality syndromes

Relevant disorders: Limb abnormality, HP:0040064
This panel contains these 3 panels:
Radial Ray Abnormalities v1.15
Polydactyly v0.281
Hand and foot malformations v0.76
Panel types: Superpanel, Victorian Clinical Genetics Services, Royal Melbourne Hospital, Rare Disease
Description
This is a superpanel containing genes associated with non-syndromic and syndromic limb and digital malformations.

299 Entities

263 reviewed, 264 green

List Entity Reviews Mode of inheritance Details
299 Entitiess
Green List (high evidence)
ACVR1
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Fibrodysplasia ossificans progressiva 135100
Tags
  • clinical trial
Green List (high evidence)
ADAMTS10
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Expert list
  • Victorian Clinical Genetics Services
  • Expert Review Green
Phenotypes
  • Weill-Marchesani syndrome 1, recessive, 277600
Tags
Green List (high evidence)
ADAMTS17
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Weill-Marchesani syndrome type 4
Tags
Green List (high evidence)
AFF4
Hand and foot malformations v0.76
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Other
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • CHOPS syndrome MIM#616368
Tags
Green List (high evidence)
AHI1
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 3, MIM# 608629
Tags
Green List (high evidence)
AKT3
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2, MIM# 615937
Tags
Green List (high evidence)
ANKRD11
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • KBG syndrome 148050
Tags
Green List (high evidence)
ARHGAP31
Hand and foot malformations v0.76
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
  • Genetic Health Queensland
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Adams-Oliver syndrome 1 100300
Tags
Green List (high evidence)
ARID1A
Hand and foot malformations v0.76
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
Phenotypes
  • Coffin-Siris
Tags
Green List (high evidence)
ARID1B
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
Phenotypes
  • Coffin-Siris syndrome type 1 - 135900
Tags
Green List (high evidence)
ARL6
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 3, MIM# 600151
Tags
Green List (high evidence)
B3GLCT
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • O-fucose-specific beta-1,3-N-glucosyltransferase deficiency (Disorders of protein O-glycosylation, O-mannosylglycan synthesis deficiencies)
  • Peters-plus syndrome 261540
Tags
Green List (high evidence)
B9D2
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Genetic Health Queensland
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 34, MIM#614175
  • Meckel syndrome 10, MIM#614175
Tags
Green List (high evidence)
BBS1
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 1, MIM# 209900
Tags
Green List (high evidence)
BBS10
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Tags
Green List (high evidence)
BBS12
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Expert Review Green
  • Victorian Clinical Genetics Services
Tags
Green List (high evidence)
BBS2
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Expert Review Green
  • Victorian Clinical Genetics Services
Tags
Green List (high evidence)
BBS4
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 4, MIM#615982
  • MONDO:0014433
Tags
Green List (high evidence)
BBS5
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 5, MIM#615983
  • MONDO:0014434
Tags
Green List (high evidence)
BBS7
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 7, MIM# 615984
  • MONDO:0014435
Tags
Green List (high evidence)
BBS9
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 9, MIM#615986
  • MONDO:0014437
Tags
Green List (high evidence)
BHLHA9
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Syndactyly, mesoaxial synostotic, with phalangeal reduction, MIM# 609432
Tags
Green List (high evidence)
BMP2
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Brachydactyly, type A2 112600
  • short stature, facial dysmorphism and skeletal anomalies with or without cardiac aomalies 617877.
Tags
Green List (high evidence)
BMP4
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
BMPR1B
Hand and foot malformations v0.76
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Acromesomelic dysplasia, Demirhan type 609441
  • Brachydactyly, type A1, D 616849
  • Brachydactyly, type A2 112600
Tags
Green List (high evidence)
BRCA2
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group D1, MIM# 605724
Tags
Green List (high evidence)
BRIP1
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group J, MIM# 609054
Tags
  • treatable
Green List (high evidence)
C2CD3
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
C5orf42
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 17, MIM# 614615
  • MONDO:0013824
  • Orofaciodigital syndrome VI, MIM# 277170
Tags
  • new gene name
Green List (high evidence)
CACNA1C
Hand and foot malformations v0.76
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Timothy syndrome MIM#601005
Tags
Green List (high evidence)
CC2D2A
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
CCND2
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
CDH3
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Ectodermal dysplasia, ectrodactyly, and macular dystrophy 225280
Tags
Green List (high evidence)
CENPF
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
CEP120
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short-rib thoracic dysplasia 13 with or without polydactyly, MIM# 616300
Tags
Green List (high evidence)
CEP164
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome
  • Nephronophthisis 15, MIM# 614845
  • Oro-facio-digital syndrome
Tags
Green List (high evidence)
CEP290
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Expert Review Green
  • Victorian Clinical Genetics Services
Tags
Green List (high evidence)
CEP41
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
CHSY1
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Temtamy preaxial brachydactyly syndrome 605282
Tags
Green List (high evidence)
CKAP2L
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
CREBBP
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Rubinstein-Taybi syndrome 180849
Tags
Green List (high evidence)
CSPP1
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 21, MIM# 615636
  • MONDO:0014288
Tags
Green List (high evidence)
DDX59
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Orofaciodigital syndrome V (MIM#174300)
Tags
Green List (high evidence)
DHCR7
Hand and foot malformations v0.76
4 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • NHS GMS
  • Expert Review Green
  • Expert list
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Smith-Lemli-Opitz syndrome 270400
Tags
Green List (high evidence)
DHCR7
Polydactyly v0.281
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Smith-Lemli-Opitz syndrome - MIM#270400
Tags
Green List (high evidence)
DHODH
Hand and foot malformations v0.76
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Expert Review Green
  • NHS GMS
  • Victorian Clinical Genetics Services
Phenotypes
  • Miller syndrome (postaxial acrofacial dysostosis) 263750
Tags
Green List (high evidence)
DLL4
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Adams-Oliver syndrome 6, 616589
Tags
Green List (high evidence)
DLX5
Hand and foot malformations v0.76
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Expert list
  • NHS GMS
Phenotypes
  • Split-hand/foot malformation 1 with sensorineural hearing loss 220600
Tags
Green List (high evidence)
DOCK6
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Adams-Oliver syndrome 2 614219
Tags
Green List (high evidence)
DPF2
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Coffin-Siris syndrome 7 MIM#618027
Tags
Green List (high evidence)
DVL1
Hand and foot malformations v0.76
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, paternally imprinted (maternal allele expressed)
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • UKGTN
  • Radboud University Medical Center, Nijmegen
  • NHS GMS
  • Expert list
Phenotypes
  • Robinow syndrome, autosomal dominant 2, MIM# 616331
Tags
Green List (high evidence)
DVL3
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Robinow syndrome, autosomal dominant 3, 616894
Tags
Green List (high evidence)
DYNC1I1
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Split-hand/split-foot malformation (SHFM) MONDO:0016576, DYNC1I1-related
Tags
  • SV/CNV
Green List (high evidence)
DYNC2H1
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short-rib thoracic dysplasia 3 with or without polydactyly, MIM# 613091
  • MONDO:0013127
Tags
Green List (high evidence)
DYNC2LI1
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short-rib thoracic dysplasia 15 with polydactyly (MIM#617088)
Tags
Green List (high evidence)
EBP
Polydactyly v0.281
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
EOGT
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Adams Oliver syndrome 4
Tags
Green List (high evidence)
EP300
Hand and foot malformations v0.76
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Rubinstein-Taybi syndrome 180849
Tags
Green List (high evidence)
ERCC4
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi aanemia, complementation group Q, MIM# 615272
  • MONDO:0014108
Tags
Green List (high evidence)
ESCO2
Radial Ray Abnormalities v1.15
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Roberts syndrome 268300
  • SC phocomelia syndrome 269000
  • Juberg-Hayward syndrome, MIM# 216100
Tags
Green List (high evidence)
ESCO2
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • SC phocomelia syndrome 269000
  • Roberts syndrome 268300
Tags
Green List (high evidence)
EVC
Polydactyly v0.281
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
EVC2
Polydactyly v0.281
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FAM58A
Hand and foot malformations v0.76
0 reviews
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • STAR syndrome 300707
Tags
Green List (high evidence)
FANCA
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group A, MIM# 227650
  • MONDO:0009215
Tags
Green List (high evidence)
FANCB
Radial Ray Abnormalities v1.15
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group B, MIM# 300514
  • MONDO:0010351
Tags
Green List (high evidence)
FANCC
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group C, MIM# 227645
  • MONDO:0009213
Tags
Green List (high evidence)
FANCD2
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group D2, MIM# 227646
  • MONDO:0009214
Tags
Green List (high evidence)
FANCE
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group E, MIM# 600901
  • MONDO:0010953
Tags
Green List (high evidence)
FANCF
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group F 603467
  • MONDO:0011325
Tags
Green List (high evidence)
FANCG
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group G, MIM# 614082
  • MONDO:0013565
Tags
Green List (high evidence)
FANCI
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anemia, complementation group I, MIM# 609053
  • MONDO:0012186
Tags
Green List (high evidence)
FANCL
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anemia, complementation group L, MIM# 614083
  • MONDO:0013566
Tags
Green List (high evidence)
FAT1
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • facial dysmorphism
  • colobomatous microphthalmia
  • ptosis
  • syndactyly with or without nephropathy
Tags
Green List (high evidence)
FBN1
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Marfan syndrome 154700
  • Weill-Marchesani syndrome 2, dominant 608328
  • Stiff skin syndrome 184900
  • Acromicric dysplasia 102370
  • Geleophysic dysplasia 2 614185
Tags
Green List (high evidence)
FGF10
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FGF10
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • NHS GMS
Phenotypes
  • Lacrimoauriculodentodigital syndrome (149730)
  • Aplasia of lacrimal and salivary glands (180920)
Tags
Green List (high evidence)
FGF9
Hand and foot malformations v0.76
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Multiple synostoses syndrome type 3 612961
Tags
Green List (high evidence)
FGFR1
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FGFR2
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FGFR2
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • LADD syndrome, MIM#149730
Tags
Green List (high evidence)
FGFR3
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FGFR3
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • LADD syndrome, MIM#149730
Tags
Green List (high evidence)
FIG4
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Yunis-Varon syndrome 216340
  • Amyotrophic lateral sclerosis 11 612577
Tags
Green List (high evidence)
FIG4
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Yunis-Varon syndrome, MIM# 216340
Tags
Green List (high evidence)
FLNA
Hand and foot malformations v0.76
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Osteodysplasty Melnick Needles 309350 XLD
  • Otopalatodigital syndrome, type II 304120 XLD
  • Frontometaphyseal dysplasia 305620
  • Terminal osseous dysplasia 300244
  • Otopalatodigital syndrome, type I -311300
Tags
Green List (high evidence)
FLNA
Radial Ray Abnormalities v1.15
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Melnick-Needles syndrome, 309350
Tags
Green List (high evidence)
FLVCR1
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • neurodevelopmental disorder MONDO:0700092, FLVCR1-related
Tags
Green List (high evidence)
FRAS1
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FREM2
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FZD2
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Autosomal dominant omodysplasia 164745
  • Autosomal dominant omodysplasia type 2 164745
Tags
Green List (high evidence)
GDF5
Hand and foot malformations v0.76
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Brachydactyly, type A1, C, MIM# 615072
  • Brachydactyly, type A2 MIM#112600
  • Brachydactyly, type C, MIM# 113100
  • Symphalangism, proximal, 1B, MIM# 615298
Tags
Green List (high evidence)
GDF5
Polydactyly v0.281
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
GDF6
Hand and foot malformations v0.76
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Multiple synostoses syndrome type 4 - 617898.
  • Klippel-Feil syndrome 1, autosomal dominant 118100
Tags
Green List (high evidence)
GJA1
Hand and foot malformations v0.76
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Hypoplastic left heart syndrome 1 241550
  • Syndactyly, type III 186100
  • Oculodentodigital dysplasia 164200
  • Palmoplantar keratoderma with congenital alopecia 104100
  • Craniometaphyseal dysplasia, autosomal recessive 218400
  • Erythrokeratodermia variabilis et progressiva 133200
  • Oculodentodigital dysplasia, autosomal recessive 257850
Tags
Green List (high evidence)
GLI1
Polydactyly v0.281
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Polydactyly, postaxial, type A8 MIM#618123
  • Polydactyly, preaxial I MIM#174400
Tags
Green List (high evidence)
GLI2
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
GLI3
Polydactyly v0.281
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Greig cephalopolysyndactyly syndrome, MIM# 175700
  • Pallister-Hall syndrome, MIM# 146510
  • Polydactyly, postaxial, types A1 and B, MIM# 174200
  • Polydactyly, preaxial, type IV, MIM# 174700
Tags
Green List (high evidence)
GNAS
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, paternally imprinted (maternal allele expressed)
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • McCune-Albright syndrome, somatic, mosaic 174800
  • ACTH-independent macronodular adrenal hyperplasia 219080 IC
  • Osseous heteroplasia, progressive 166350
  • Pseudohypoparathyroidism Ic 612462
  • Pseudopseudohypoparathyroidism 612463
  • Pseudohypoparathyroidism Ia 103580
  • Pseudohypoparathyroidism Ib 603233
Tags
Green List (high evidence)
GPC3
Polydactyly v0.281
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
GRIP1
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
GSC
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short stature, auditory canal atresia, mandibular hypoplasia, skeletal abnormalities, MIM# 602471
Tags
Green List (high evidence)
HDAC8
Hand and foot malformations v0.76
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Wilson-Turner syndrome 309585
  • Cornelia de Lange syndrome 5 300882
Tags
Green List (high evidence)
HDAC8
Radial Ray Abnormalities v1.15
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cornelia de Lange syndrome 5, MIM# 300882
Tags
Green List (high evidence)
HMGB1
Polydactyly v0.281
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • brachyphalangy, polydactyly, and tibial aplasia/hypoplasia MIM#163905
Tags
Green List (high evidence)
HNRNPK
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
HOXA13
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Hand-foot-uterus syndrome, MIM# 140000
Tags
Green List (high evidence)
HOXA13
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
HOXD13
Hand and foot malformations v0.76
1 review
1 green
BOTH monoallelic and biallelic (but BIALLELIC mutations cause a more SEVERE disease form), autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Brachydactyly, type E 113300 Brachydactyly, type D, MIM# 113200
  • Syndactyly, type V, MIM# 186300
  • Synpolydactyly 1, MIM# 186000
  • Brachydactyly-syndactyly syndrome, MIM# 610713
Tags
Green List (high evidence)
HOXD13
Polydactyly v0.281
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Phenotypes
  • Synpolydactyly 1, MIM# 186000
Tags
Green List (high evidence)
ICK
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Endocrine-cerebroosteodysplasia, MIM# 612651
Tags
Green List (high evidence)
IFT140
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short-rib thoracic dysplasia 9 with or without polydactyly, MIM# 266920
Tags
Green List (high evidence)
IFT172
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Expert Review Green
  • Victorian Clinical Genetics Services
Tags
Green List (high evidence)
IFT27
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
IFT43
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
IFT52
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short-rib thoracic dysplasia 16 with or without polydactyly, MIM# 617102
Tags
Green List (high evidence)
IFT80
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
IHH
Hand and foot malformations v0.76
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Brachydactyly, type A1 112500
  • Acrocapitofemoral dysplasia 607778
Tags
Green List (high evidence)
INPP5E
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
IQCE
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Postaxial polydactyly
Tags
Green List (high evidence)
KDM6A
Hand and foot malformations v0.76
2 reviews
2 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Kabuki syndrome 2 MIM#300867
Tags
Green List (high evidence)
KIAA0586
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
KIAA0825
Polydactyly v0.281
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Polydactyly, postaxial, type A10, MIM# 618498
Tags
Green List (high evidence)
KIF7
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
KMT2A
Hand and foot malformations v0.76
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Wiedemann-Steiner syndrome MIM#605130
Tags
Green List (high evidence)
KMT2D
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Kabuki syndrome 1 - 147920
Tags
Green List (high evidence)
LBR
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Greenberg skeletal dysplasia, MIM# 215140
Tags
Green List (high evidence)
LEF1
Polydactyly v0.281
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Syndromic disease, MONDO:0002254, LEF1-related
Tags
Green List (high evidence)
LEF1
Radial Ray Abnormalities v1.15
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Syndromic disease, MONDO:0002254, LEF1-related
Tags
Green List (high evidence)
LMBR1
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Laurin-Sandrow syndrome, MIM# 135750
Tags
  • SV/CNV
Green List (high evidence)
LMBR1
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Phenotypes
  • Polydactyly, preaxial type II, MIM# 174500
Tags
Green List (high evidence)
LRP4
Hand and foot malformations v0.76
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Sclerosteosis 2 614305
  • Cenani-Lenz syndactyly syndrome 212780
Tags
Green List (high evidence)
LTBP3
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Geleophysic dysplasia 3 617809
  • Dental anomalies and short stature 610216
Tags
Green List (high evidence)
LZTFL1
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
MAP3K20
Polydactyly v0.281
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Split-foot malformation with mesoaxial polydactyly MIM#616890
Tags
Green List (high evidence)
MAPKAPK5
Polydactyly v0.281
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurocardiofaciodigital syndrome, MIM# 619869
Tags
Green List (high evidence)
MAX
Polydactyly v0.281
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Polydactyly-macrocephaly syndrome, MIM# 620712
Tags
Green List (high evidence)
MBTPS2
Polydactyly v0.281
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
MECOM
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Radioulnar synostosis with amegakaryocytic thrombocytopenia 2, OMIM # 616738
  • Radioulnar synostosis without hematological aberration, no OMIM #
Tags
Green List (high evidence)
MEGF8
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
MGP
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Keutel syndrome 245150
Tags
Green List (high evidence)
MKKS
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
MKS1
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Expert Review Green
  • Victorian Clinical Genetics Services
Tags
Green List (high evidence)
MYCN
Hand and foot malformations v0.76
3 reviews
3 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Megalencephaly-polydactyly syndrome, MIM# 620748
  • Feingold syndrome (Microcephaly-oculo-digito-esophageal-duodenal) 164280
Tags
Green List (high evidence)
MYCN
Polydactyly v0.281
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Megalencephaly-polydactyly syndrome, MIM# 620748
Tags
Green List (high evidence)
NECTIN1
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Cleft lip/palate-ectodermal dysplasia syndrome MIM#225060
Tags
Green List (high evidence)
NECTIN4
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Ectodermal dysplasia-syndactyly syndrome 1 MIM#613573
Tags
Green List (high evidence)
NEK1
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short-rib thoracic dysplasia 6 with or without polydactyly, MIM# 263520
Tags
Green List (high evidence)
NIPBL
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Cornelia de Lange syndrome 1 122470
Tags
Green List (high evidence)
NIPBL
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cornelia de Lange syndrome 1, MIM# 122470
Tags
Green List (high evidence)
NOG
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Stapes ankylosis with broad thumb and toes 184460
  • Symphalangism, proximal, 1A 185800
  • Multiple synostoses syndrome 1 186500
  • Tarsal-carpal coalition syndrome 186570
  • Brachydactyly, type B2 611377
Tags
Green List (high evidence)
NOTCH1
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Limb, scalp and skull defects
  • AOS
  • Adams-Oliver syndrome 5, 616028
  • Combination of aplasia cutis congenita of the scalp vertex and terminal transverse limb defects (e.g., amputations, syndactyly, brachydactyly, or oligodactyly)
Tags
Green List (high evidence)
NPHP3
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
NPM1
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • radial ray defects
  • short stature
  • nail dsytrophy
  • bone marrow failure
Tags
Green List (high evidence)
NSDHL
Hand and foot malformations v0.76
2 reviews
2 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • NHS GMS
Phenotypes
  • CK syndrome 300831
  • Congenital hemidysplasia, ichthyosis, limb defects (CHILD) syndrome 308050
Tags
Green List (high evidence)
NXN
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Robinow syndrome, autosomal recessive 2 MIM#618529
Tags
Green List (high evidence)
OFD1
Polydactyly v0.281
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
PALB2
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group N, MIM# 610832
Tags
Green List (high evidence)
PDE3A
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Hypertension and brachydactyly syndrome, 112410
Tags
Green List (high evidence)
PDE4D
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Acrodysostosis 2, with or without hormone resistance 614613
Tags
Green List (high evidence)
PGM3
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Immunodeficiency 23 615816
Tags
Green List (high evidence)
PHF6
Hand and foot malformations v0.76
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Borjeson-Forssman-Lehmann syndrome MIM#301900
Tags
Green List (high evidence)
PIGV
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Hyperphosphatasia with mental retardation syndrome 1 239300
Tags
Green List (high evidence)
PIK3CA
Polydactyly v0.281
2 reviews
Other
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Megalencephaly-capillary malformation (MCAP) syndrome , MIM#602501
Tags
  • somatic
Green List (high evidence)
PIK3R2
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
PITX1
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
POLR1A
Hand and foot malformations v0.76
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Acrofacial dysostosis, Cincinnati type 616462
Tags
Green List (high evidence)
PORCN
Polydactyly v0.281
1 review
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
PRKACA
Polydactyly v0.281
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Cardioacrofacial dysplasia 1, MIM# 619142
  • Postaxial hand polydactyly
  • Postaxial foot polydactyly
  • Common atrium
  • Atrioventricular canal defect
  • Narrow chest
  • Abnormality of the teeth
  • Intellectual disability
Tags
Green List (high evidence)
PRKACB
Polydactyly v0.281
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Cardioacrofacial dysplasia 2, MIM# 619143
  • Postaxial hand polydactyly
  • Postaxial foot polydactyly
  • Common atrium
  • Atrioventricular canal defect
  • Narrow chest
  • Abnormality of the teeth
  • Intellectual disability
Tags
Green List (high evidence)
PRKAR1A
Hand and foot malformations v0.76
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Myxoma, intracardiac 255960
  • Acrodysostosis 1, with or without hormone resistance 101800
  • Pigmented nodular adrenocortical disease, primary, 1 610489
Tags
Green List (high evidence)
PRMT7
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Short stature, brachydactyly, intellectual developmental disability, and seizures 617157
Tags
Green List (high evidence)
PTDSS1
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Lenz-Majewski hyperostotic dwarfism 151050
Tags
Green List (high evidence)
PTHLH
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Brachydactyly, type E2 613382
Tags
Green List (high evidence)
RAB23
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
RAB34
Polydactyly v0.281
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Orofaciodigital syndrome 20, MIM#620718
Tags
Green List (high evidence)
RAB34
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Orofaciodigital syndrome 20, MIM#620718
Tags
Green List (high evidence)
RAD21
Hand and foot malformations v0.76
3 reviews
3 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Cornelia de Lange syndrome 4 614701
Tags
Green List (high evidence)
RAD21
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cornelia de Lange syndrome 4, MIM# 614701
Tags
Green List (high evidence)
RAD51C
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anemia, complementation group O, MIM# 613390
Tags
Green List (high evidence)
RBM10
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
RBM8A
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Thrombocytopenia-absent radius syndrome 274000
Tags
Green List (high evidence)
RBM8A
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Thrombocytopenia-absent radius syndrome, MIM# 274000
Tags
  • SV/CNV
Green List (high evidence)
RBPJ
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Adams-Oliver syndrome 3, 614814
Tags
Green List (high evidence)
RECQL4
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Baller-Gerold syndrome, MIM# 218600
  • RAPADILINO syndrome, MIM# 266280
  • Rothmund-Thomson syndrome, type 2,MIM# 268400
Tags
Green List (high evidence)
RECQL4
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Rothmund-Thomson syndrome 268400
  • RAPILINO syndrome 266280
  • Baller-Gerold syndrome 218600
Tags
Green List (high evidence)
ROR2
Hand and foot malformations v0.76
1 review
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Robinow syndrome, autosomal recessive 268310
  • Brachydactyly, type B1 113000
Tags
Green List (high evidence)
RPGRIP1L
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
RPL11
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anaemia 7, MIM# 612562
  • MONDO:0012938
Tags
Green List (high evidence)
RPL15
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Diamond-Blackfan anemia 12, MIM# 615550
Tags
Green List (high evidence)
RPL26
Radial Ray Abnormalities v1.15
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anaemia 11, MIM# 614900
Tags
Green List (high evidence)
RPL35A
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anaemia 5, MIM# 612528
  • MONDO:0012925
Tags
  • SV/CNV
Green List (high evidence)
RPL5
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anaemia 6, MIM# 612561
  • MONDO:0012937
Tags
Green List (high evidence)
RPS10
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anemia 9, MIM# 613308
  • MONDO:0013216
Tags
Green List (high evidence)
RPS17
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anaemia 4, MIM# 612527
  • MONDO:0012924
Tags
Green List (high evidence)
RPS19
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anaemia 1, MIM# 105650
  • MONDO:0007110
Tags
Green List (high evidence)
RPS24
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-blackfan anaemia 3, MIM# 610629
  • MONDO:0012529
Tags
Green List (high evidence)
RPS26
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anaemia 10, MIM# 613309
  • MONDO:0013217
Tags
Green List (high evidence)
RPS7
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anaemia 8, MIM# 612563
  • MONDO:0012939
Tags
Green List (high evidence)
SALL1
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
SALL1
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Townes-Brocks syndrome 1, MIM#107480
  • MONDO:0054581
Tags
Green List (high evidence)
SALL4
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
SALL4
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Duane-radial ray syndrome, MIM# 607323
  • MONDO:0011812
  • IVIC syndrome, MIM# 147750
  • MONDO:0007836
Tags
Green List (high evidence)
SC5D
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
SCNM1
Polydactyly v0.281
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Orofaciodigital syndrome XIX, MIM# 620107
Tags
Green List (high evidence)
SF3B4
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Acrofacial dysostosis 1, Nager type 154400
Tags
Green List (high evidence)
SF3B4
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Acrofacial dysostosis 1, Nager type, MIM# 154400
Tags
Green List (high evidence)
SHH
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
SHOX
Radial Ray Abnormalities v1.15
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Leri-Weill dyschondrosteosis, MIM# 127300
  • Langer mesomelic dysplasia, MIM#249700
Tags
Green List (high evidence)
SLX4
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia, complementation group P, MIM# 613951
  • MONDO:0013499
Tags
Green List (high evidence)
SMAD4
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Myhre syndrome 139210
Tags
Green List (high evidence)
SMARCA2
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Nicolaides-Baraitser syndrome MIM#601358
Tags
Green List (high evidence)
SMARCA4
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Coffin-Siris syndrome 4 MIM#614609
Tags
Green List (high evidence)
SMARCB1
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Coffin-Siris syndrome 3 MIM#614608
Tags
Green List (high evidence)
SMARCE1
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Coffin-Siris syndrome 5 MIM#616938
Tags
Green List (high evidence)
SMC1A
Hand and foot malformations v0.76
2 reviews
2 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cornelia de Lange syndrome 2 300590
Tags
Green List (high evidence)
SMC1A
Radial Ray Abnormalities v1.15
1 review
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cornelia de Lange syndrome 2, MIM# 300590
Tags
Green List (high evidence)
SMC3
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Cornelia de Lange syndrome 3, MIM# 610759
Tags
Green List (high evidence)
SMC3
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Cornelia de Lange syndrome 3 610759
Tags
Green List (high evidence)
SMO
Polydactyly v0.281
2 reviews
1 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Microcephaly, congenital heart disease, polydactyly, aganglionosis
  • Pallister-Hall-like syndrome , MIM#241800
  • Curry-Jones syndrome, somatic mosaic 601707
Tags
Green List (high evidence)
SMOC1
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
SOST
Hand and foot malformations v0.76
0 reviews
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Van Buchem disease 239100
  • Sclerosteosis 1 269500
  • Craniodiaphyseal dysplasia, autosomal dominant 122860
Tags
Green List (high evidence)
SOX9
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Campomelic dysplasia with autosomal sex reversal 114290
Tags
Green List (high evidence)
SPINT2
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Diarrhoea 3, secretory sodium, congenital, syndromic, MIM# 270420
  • MONDO:0010036
Tags
  • founder
Green List (high evidence)
TBX15
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Cousin syndrome 260660
Tags
Green List (high evidence)
TBX3
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Ulnar-mammary syndrome, MIM# 181450
  • MONDO:0008411
Tags
Green List (high evidence)
TBX3
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TBX5
Radial Ray Abnormalities v1.15
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Holt-Oram syndrome, MIM# 142900
Tags
Green List (high evidence)
TBX5
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TCTEX1D2
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short-rib thoracic dysplasia 17 with or without polydactyly, MIM# 617405
Tags
Green List (high evidence)
TCTN2
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 24, MIM# 616654
  • MONDO:0014724
  • Meckel syndrome 8, MIM# 613885
  • MONDO:0013482
Tags
Green List (high evidence)
TCTN3
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TFAP2A
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TFAP2B
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TGDS
Hand and foot malformations v0.76
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Catel-Manzke syndrome 616145
Tags
Green List (high evidence)
TMEM107
Polydactyly v0.281
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Meckel syndrome 13 MIM#617562
  • Orofaciodigital syndrome XVI MIM#617563
Tags
Green List (high evidence)
TMEM138
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TMEM216
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TMEM231
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TMEM237
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 14, MIM# 614424
Tags
Green List (high evidence)
TMEM67
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TP63
Hand and foot malformations v0.76
0 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Hay-Wells syndrome 106260
  • Rapp-Hodgkin syndrome 129400
  • Limb-mammary syndrome 603543
  • Split-hand/foot malformation 4 605289
  • Orofacial cleft 8 129400
  • ULT syndrome 103285
  • Ectrodactyly, ectodermal dysplasia, and cleft lip/palate syndrome 3 604292
Tags
Green List (high evidence)
TRAF3IP1
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Senior-Loken syndrome 9, MIM# 616629
  • MONDO:0014712
Tags
Green List (high evidence)
TRPS1
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Trichorhinophalangeal syndrome, type III 190351
  • Trichorhinophalangeal syndrome, type I 190350
Tags
Green List (high evidence)
TRPV4
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Expert Review Green
Phenotypes
  • Parastremmatic dwarfism 168400
  • Metatropic dysplasia 156530
  • Spinal muscular atrophy, distal, congenital nonprogressive 600175
  • Scapuloperoneal spinal muscular atrophy 181405
  • SED, Maroteaux type 184095
  • Spondylometaphyseal dysplasia, Kozlowski type 184252
  • Hereditary motor and sensory neuropathy, type IIc 606071
  • Brachyolmia type 3 113500
  • Digital arthropathy-brachydactyly, familial 606835
Tags
Green List (high evidence)
TTC21B
Polydactyly v0.281
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
TTC8
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 8, MIM# 615985
Tags
Green List (high evidence)
TWIST1
Polydactyly v0.281
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Robinow-Sorauf syndrome, MIM# 180750
Tags
Green List (high evidence)
UBA2
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review
Phenotypes
  • ACCES syndrome, MIM# 619959
  • Split-Hand/Foot Malformation
  • Aplasia Cutis Congenita
  • Ectrodactyly
Tags
Green List (high evidence)
UBE2T
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Fanconi anemia, complementation group T, MIM# 616435
Tags
  • SV/CNV
Green List (high evidence)
UBE3B
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Kaufman oculocerebrofacial syndrome, MIM# 244450
  • MONDO:0009485
Tags
Green List (high evidence)
USP9X
Polydactyly v0.281
2 reviews
1 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Intellectual developmental disorder 99 MIM#300919
  • syndromic, female-restricted Intellectual developmental disorder 99 MIM#300968
Tags
Green List (high evidence)
WDPCP
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 15, MIM# 615992
  • OFD
  • Congenital heart defects, hamartomas of tongue, and polysyndactyly, 217085
Tags
Green List (high evidence)
WDR19
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
WDR34
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
WDR35
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cranioectodermal dysplasia 2, MIM#613610
  • MONDO:0013323
  • Short-rib thoracic dysplasia 7 with or without polydactyly, MIM#614091
  • MONDO:0013569
Tags
Green List (high evidence)
WDR60
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Short-rib thoracic dysplasia 8 with or without polydactyly, MIM# 615503
  • Retinitis pigmentosa
Tags
Green List (high evidence)
WNT10B
Hand and foot malformations v0.76
0 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert list
  • Expert Review Green
Phenotypes
  • Split-hand/foot malformation 6 225300
Tags
Green List (high evidence)
WNT5A
Hand and foot malformations v0.76
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Robinow syndrome, autosomal dominant 1 180700
Tags
Green List (high evidence)
WNT7A
Polydactyly v0.281
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Santos syndrome, MIM# 613005
  • Fuhrmann syndrome 228930
Tags
Green List (high evidence)
WNT7A
Radial Ray Abnormalities v1.15
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Fuhrmann syndrome, MIM# 228930
  • Ulna and fibula, absence of, with severe limb deficiency, MIM# 276820
Tags
Green List (high evidence)
ZIC3
Radial Ray Abnormalities v1.15
1 review
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • VACTERL association, X-linked 314390
Tags
Green List (high evidence)
ZRSR2
Polydactyly v0.281
2 reviews
2 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Orofaciodigital syndrome XXI, MIM# 301132
Tags
Green List (high evidence)
ZSWIM6
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Amber List (moderate evidence)
CD96
Polydactyly v0.281
2 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Genetic Health Queensland
  • Victorian Clinical Genetics Services
Phenotypes
  • C syndrome, MIM#211750
Tags
Amber List (moderate evidence)
CHUK
Hand and foot malformations v0.76
1 review
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • ?Popliteal pterygium syndrome, Bartsocas-Papas type 2 MIM#619339
  • Cocoon syndrome MIM#613630
Tags
Amber List (moderate evidence)
EFCAB7
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Polydactyly (MONDO:0021003), EFCAB7-related
Tags
Amber List (moderate evidence)
FAM92A
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Polydactyly, postaxial, type A9, MIM# 618219
Tags
Amber List (moderate evidence)
FMN1
Hand and foot malformations v0.76
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • oligosyndactyly
  • radioulnar synostosis
  • hearing loss
  • renal defects
Tags
  • SV/CNV
Amber List (moderate evidence)
HDAC4
Hand and foot malformations v0.76
3 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Albright hereditary osteodystrophy-like syndrome
  • Brachydactyly-intellectual disability
Tags
  • SV/CNV
Amber List (moderate evidence)
HOXD12
Hand and foot malformations v0.76
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Other
Phenotypes
  • Clubfoot (non-syndromic) MONDO:0007342
Tags
Amber List (moderate evidence)
HYLS1
Polydactyly v0.281
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Hydrolethalus syndrome (MIM#236680)
Tags
  • founder
Amber List (moderate evidence)
PDE6D
Polydactyly v0.281
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 22, OMIM #615665
Tags
Amber List (moderate evidence)
RAD51
Radial Ray Abnormalities v1.15
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Expert Review
Phenotypes
  • Fanconi anaemia, complementation group R, MIM# 617244
Tags
Amber List (moderate evidence)
RFWD3
Radial Ray Abnormalities v1.15
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Fanconi anemia MONDO:0019391
Tags
Amber List (moderate evidence)
RPS29
Radial Ray Abnormalities v1.15
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond-Blackfan anemia 13, MIM# 615909
Tags
Amber List (moderate evidence)
SLC30A7
Polydactyly v0.281
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • Joubert syndrome (MONDO:0018772), SLC30A7-related
Tags
Amber List (moderate evidence)
TOPORS
Polydactyly v0.281
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • MONDO:0005308
  • ciliopathy
  • postaxial polydactyly
  • multiple lingual hamartomas
  • dysmorphic features
Tags
Red List (low evidence)
ALMS1
Polydactyly v0.281
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Alstrom syndrome, MIM#203800
Tags
Red List (low evidence)
ALX3
Polydactyly v0.281
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Genetic Health Queensland
  • Victorian Clinical Genetics Services
Phenotypes
  • Frontonasal dysplasia 1, MIM#136760
Tags
Red List (low evidence)
ARMC8
Polydactyly v0.281
2 reviews
2 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
B9D1
Polydactyly v0.281
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Genetic Health Queensland
  • Victorian Clinical Genetics Services
Phenotypes
  • Joubert syndrome 27, MIM#617120
  • Meckel syndrome 9, MIM#614209
Tags
Red List (low evidence)
DACT1
Radial Ray Abnormalities v1.15
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • NHS GMS
Phenotypes
  • ?Townes-Brocks syndrome 2 (OMIM #617466)
Tags
Red List (low evidence)
DLX6
Hand and foot malformations v0.76
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Expert list
Phenotypes
  • Split-hand/foot malformation 1 183600
Tags
Red List (low evidence)
FANCM
Radial Ray Abnormalities v1.15
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Fanconi anaemia
Tags
  • refuted
Red List (low evidence)
FBLN1
Hand and foot malformations v0.76
2 reviews
2 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Synpolydactyly, 3/3'4, associated with metacarpal and metatarsal synostoses 608180
Tags
Red List (low evidence)
FBXW4
Hand and foot malformations v0.76
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Expert list
Phenotypes
  • Split-hand/foot malformation 3 syndrome 246560
Tags
Red List (low evidence)
GATA1
Radial Ray Abnormalities v1.15
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
IFT57
Hand and foot malformations v0.76
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • ?Orofaciodigital syndrome XVIII MIM#617927
Tags
Red List (low evidence)
LRP4
Polydactyly v0.281
2 reviews
1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Cenani-Lenz syndactyly syndrome, MIM# 212780
  • Sclerosteosis 2, MIM# 614305
Tags
Red List (low evidence)
LTBP2
Hand and foot malformations v0.76
2 reviews
1 green 1 red
Unknown
Sources
  • Expert Review Red
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Weill-Marchesani
Tags
Red List (low evidence)
PNPLA6
Polydactyly v0.281
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Laurence-Moon syndrome - MIM#245800
  • Boucher-Neuhauser syndrome - MIM#215470
  • Oliver-McFarlane syndrome - #275400
  • Spastic paraplegia 39, autosomal recessive - #612020
Tags
Red List (low evidence)
PROM1
Polydactyly v0.281
2 reviews
1 red
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Cone-rod dystrophy 12, MIM# 612657
  • Macular dystrophy, retinal, 2, MIM# 608051
  • Retinitis pigmentosa 41, MIM# 612095
  • Stargardt disease 4, MIM# 603786
Tags
Red List (low evidence)
RPS28
Radial Ray Abnormalities v1.15
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Diamond Blackfan anemia 15 with mandibulofacial dysostosis, MIM# 606164
Tags
Red List (low evidence)
SDCCAG8
Polydactyly v0.281
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 16, MIM# 615993
Tags
Red List (low evidence)
TBX22
Polydactyly v0.281
2 reviews
1 red
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Cleft palate with ankyloglossia, MIM# 303400
  • Abruzzo-Erickson syndrome, MIM# 302905
Tags
Red List (low evidence)
TRIM32
Polydactyly v0.281
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Bardet-Biedl syndrome 11, MIM# 615988
Tags
Red List (low evidence)
WNT3
Hand and foot malformations v0.76
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Tetra-amelia syndrome 273395
Tags
Red List (low evidence)
ZNF141
Polydactyly v0.281
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Polydactyly, postaxial, type A6, MIM# 615226
Tags

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