Liver Failure_Paediatric
Gene: FOCADEnsemblGeneIds (GRCh38): ENSG00000188352
EnsemblGeneIds (GRCh37): ENSG00000188352
OMIM: 614606, Gene2Phenotype
FOCAD is in 3 panels
2 reviews
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Liver disease, severe congenital, MIM# 619991
Suliman Khan (Victorian Clinical Genetics Services)
Moreno Traspas et al 2022 reported 14 children from ten unrelated families with syndromic form of pediatric liver cirrhosis. Genome/exome sequencing analysis reveled biallelic variants in the FOCAD gene. Most of the mutations were nonsense, frameshift, or splice site alterations, predicted to result in a loss of function, but there were also 3 missense variants at highly conserved residues. Western blot analysis of dermal fibroblasts derived from 2 patients showed near absent FOCAD expression in cellular extracts. There were also decreased levels of the SKIC2 protein, suggesting that FOCAD may contribute to the stability of RNA helicase (OMIM: 619991).
Sources: Literature, OMIMCreated: 23 Aug 2022, 6:14 a.m. | Last Modified: 23 Aug 2022, 6:40 a.m.
Panel Version: 1.15
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
pediatric syndromic liver cirrhosis
Publications
- PMID: 35864190
Mode of pathogenicity
Other
Variants in this GENE are reported as part of current diagnostic practice
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Phenotypes
-
- Liver disease, severe congenital, MIM# 619991
- OMIM
- 614606
- Clinvar variants
- Variants in FOCAD
- Penetrance
- Complete
- Publications
-
- PMID: 35864190
- Panels with this gene
History Filter Activity
Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Phenotypes for gene: FOCAD were changed from Infantile liver failure, MONDO:0000023, FOCAD-related to Liver disease, severe congenital, MIM# 619991
Entity classified by Genomics England curator
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Gene: focad has been classified as Green List (High Evidence).
Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Phenotypes for gene: FOCAD were changed from pediatric syndromic liver cirrhosis to Infantile liver failure, MONDO:0000023, FOCAD-related
Set mode of pathogenicity
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Mode of pathogenicity for gene: FOCAD was changed from Other to None
Entity classified by Genomics England curator
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Gene: focad has been classified as Green List (High Evidence).
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes, Set penetrance, Set mode of pathogenicity
Suliman Khan (Victorian Clinical Genetics Services)gene: FOCAD was added gene: FOCAD was added to Liver Failure_Paediatric. Sources: Literature Mode of inheritance for gene: FOCAD was set to BIALLELIC, autosomal or pseudoautosomal Publications for gene: FOCAD were set to PMID: 35864190 Phenotypes for gene: FOCAD were set to pediatric syndromic liver cirrhosis Penetrance for gene: FOCAD were set to Complete Mode of pathogenicity for gene: FOCAD was set to Other Review for gene: FOCAD was set to GREEN gene: FOCAD was marked as current diagnostic