Red cell disorders
Gene: SLC4A1EnsemblGeneIds (GRCh38): ENSG00000004939
EnsemblGeneIds (GRCh37): ENSG00000004939
OMIM: 109270, Gene2Phenotype
SLC4A1 is in 8 panels
1 review
Danielle Ariti (University of Melbourne)
Cryohydrocytosis
>10 families with monoallelic variants (majority missense)
Cryohydrocytosis is characterised by a mild stomatocytic haemolytic state with hyperbilirubinemia. Individuals display an increase in red cell membrane permeability to sodium and potassium in the cold. Patients present with fatigue, splenomegaly, mild anaemia, and pseudohyperkalaemia due to a potassium leak from the RBCs.
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Distal renal tubular acidosis 4 with haemolytic anaemia
>10 families reported with biallelic variants (deletion, missense)
Distal renal tubular acidosis 4 with haemolytic anaemia is characterised by haemolytic anaemia, and abnormal red cell properties (microcytosis, reticulocytosis). Other features include, height and weight less than the third percentile, lethargy, pallor, hyperchloremic metabolic acidosis, nephrocalcinosis, isothenuria, rachitic bone changes and hepatosplenomegaly.
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Ovalocytosis, SA type
>10 families reported with monoallelic variants *founder variant SLC4A1delta27 (27-bp deletion) in Southeast Asian population
Ovalocytosis in characterised by varying degrees of haemolytic anaemia and abnormal red cell properties (stomatocytic, ovalocytic, rigid and resistant to malarial parasite invasion). Other features include intermittent jaundice and abdominal pain due to pigment gall stones and enlarged spleen.
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Spherocytosis, type 4
>10 families reported with mono-allelic variants (missense, duplications, deletions)
Spherocytosis is characterised by the presence sphere-shaped erythrocytes (spherocytes) with increased osmotic fragility in peripheral smears with varying degrees of haemolytic anaemia, splenomegaly and jaundice (Hyperbilirubinemia). These characteristics can commonly lead to aplastic crisis, haemolytic episodes and the need for a splenectomy.
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Green- all phenotypesCreated: 14 Sep 2021, 1:21 a.m. | Last Modified: 14 Sep 2021, 1:21 a.m.
Panel Version: 0.128
Mode of inheritance
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Phenotypes
Cryohydrocytosis MIM# 185020; Distal renal tubular acidosis 4 with haemolytic anaemia MIM# 611590; Ovalocytosis, SA type MIM# 166900; Spherocytosis, type 4 MIM# 612653
Publications
Details
- Mode of Inheritance
- BOTH monoallelic and biallelic, autosomal or pseudoautosomal
- Sources
-
- Expert Review Green
- Yorkshire and North East GLH
- NHS GMS
- Wessex and West Midlands GLH
- North West GLH
- London South GLH
- Phenotypes
-
- Cryohydrocytosis MIM# 185020
- Distal renal tubular acidosis 4 with haemolytic anaemia MIM# 611590
- Ovalocytosis, SA type MIM# 166900
- Spherocytosis, type 4 MIM# 612653
- OMIM
- 109270
- Clinvar variants
- Variants in SLC4A1
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Entity classified by Genomics England curator
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Gene: slc4a1 has been classified as Green List (High Evidence).
Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Phenotypes for gene: SLC4A1 were changed from 166900 Ovalocytosis, SA type, 185020 Cryohydrocytosis; RBC membrane abnormality; 166900 Ovalocytosis, SA type; Haemolytic Anemia; Cryohydrocytosis,185020; 612653 Spherocytosis, type 4; Ovalocytosis, SA type, 166900; Spherocytosis, type 4, 612653 to Cryohydrocytosis MIM# 185020; Distal renal tubular acidosis 4 with haemolytic anaemia MIM# 611590; Ovalocytosis, SA type MIM# 166900; Spherocytosis, type 4 MIM# 612653
Set publications
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Publications for gene: SLC4A1 were set to 1722314
Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Mode of inheritance for gene: SLC4A1 was changed from MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown to BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Added phenotypes 166900 Ovalocytosis, SA type, 185020 Cryohydrocytosis; RBC membrane abnormality; 166900 Ovalocytosis, SA type; Haemolytic Anemia; Cryohydrocytosis,185020; 612653 Spherocytosis, type 4; Ovalocytosis, SA type, 166900; Spherocytosis, type 4, 612653 for gene: SLC4A1
Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)gene: SLC4A1 was added gene: SLC4A1 was added to Rare anaemia_GEL. Sources: London South GLH,North West GLH,Expert Review Green,Wessex and West Midlands GLH,NHS GMS,Yorkshire and North East GLH Mode of inheritance for gene: SLC4A1 was set to MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown Publications for gene: SLC4A1 were set to 1722314 Phenotypes for gene: SLC4A1 were set to 166900 Ovalocytosis, SA type; Ovalocytosis, SA type, 166900; 612653 Spherocytosis, type 4; Haemolytic Anemia; Cryohydrocytosis,185020; RBC membrane abnormality; 166900 Ovalocytosis, SA type, 185020 Cryohydrocytosis; Spherocytosis, type 4, 612653