- Panels
- Skeletal dysplasia
- WHRN
Genes in panel
- ABCC9 1
- ABL1 2
- ACAN 1
- ACP5 1
- ACVR1 2
- ADAMTS10 1
- ADAMTS17 1
- ADAMTSL2 1
- AFF3 1
- AFF4 2
- AGA 1
- AGPS 1
- ALG12 1
- ALG3 1
- ALG9 1
- ALPL 3
- ALX1 1
- ALX3 1
- ALX4 1
- AMER1 1
- ANKH 1
- ANKRD11 1
- ANO5 1
- ANTXR2 1
- ARHGAP31 2
- ARID1A 2
- ARID1B 2
- ARL6 1
- ARSB 1
- ARSE 1
- ARSK 1
- ASXL1 1
- ASXL2 1
- ATP6V0A2 1
- ATP7A 3
- AXIN1 2
- B3GALT6 1
- B3GAT3 1
- B3GLCT 1
- B4GALT7 2
- BBS1 2
- BBS10 1
- BBS12 2
- BBS2 1
- BBS4 1
- BBS5 1
- BBS7 1
- BBS9 1
- BGN 1
- BHLHA9 1
- BMP1 1
- BMP2 1
- BMPER 1
- BMPR1B 2
- C21orf2 1
- C2CD3 2
- CA2 2
- CANT1 1
- CASR 1
- CBFB 1
- CC2D2A 2
- CCDC8 1
- CDC45 1
- CDH3 1
- CDKN1C 1
- CDT1 1
- CEP120 1
- CEP290 1
- CHST14 1
- CHST3 1
- CHSY1 1
- CLCN5 1
- CLCN7 1
- COG1 1
- COG4 2
- COL10A1 2
- COL11A1 1
- COL11A2 1
- COL1A1 1
- COL1A2 1
- COL27A1 2
- COL2A1 1
- COL9A1 1
- COL9A2 1
- COL9A3 3
- COLEC11 1
- COMP 1
- CREB3L1 1
- CREBBP 1
- CRTAP 1
- CSGALNACT1 1
- CSPP1 1
- CTSA 1
- CTSC 2
- CTSK 1
- CUL7 1
- CYP26B1 1
- CYP27B1 1
- CYP2R1 1
- DCC 3
- DDR2 1
- DDRGK1 2
- DHCR24 2
- DHCR7 4
- DHODH 2
- DIS3L2 1
- DLL3 1
- DLL4 1
- DLX3 1
- DLX5 1
- DMP1 1
- DNAJC21 1
- DNMT3A 2
- DOCK6 1
- DONSON 1
- DPAGT1 1
- DPM1 1
- DSPP 1
- DVL1 2
- DVL3 1
- DYM 1
- DYNC2H1 1
- DYNC2LI1 2
- EBP 2
- EED 1
- EFL1 1
- EFTUD2 2
- EIF2AK3 1
- EN1 1
- ENPP1 1
- EOGT 1
- ERF 1
- ERI1 2
- ESCO2 1
- EVC 3
- EVC2 2
- EXOC6B 1
- EXT1 1
- EXT2 1
- EXTL3 1
- EZH2 2
- FAM111A 1
- FAM20C 1
- FAM46A 1
- FAM58A 1
- FBN1 0
- FBN2 2
- FERMT3 1
- FGF10 1
- FGF16 1
- FGF23 1
- FGF9 2
- FGFR1 2
- FGFR2 1
- FGFR3 1
- FIG4 0
- FKBP10 1
- FLNA 1
- FLNB 2
- FN1 1
- FUCA1 1
- FUZ 1
- FZD2 1
- GALNS 1
- GALNT3 1
- GDF5 3
- GDF6 3
- GHR 1
- GINS3 1
- GJA1 1
- GLB1 1
- GLI3 3
- GNAS 1
- GNPAT 1
- GNPTAB 2
- GNPTG 1
- GNS 1
- GORAB 1
- GPC6 3
- GPX4 1
- GSC 1
- GUSB 1
- GZF1 1
- HDAC8 1
- HES7 1
- HGSNAT 2
- HHAT 2
- HOXA13 1
- HOXD13 1
- HPGD 1
- HSPG2 3
- ICK 1
- IDH1 1
- IDS 1
- IDUA 2
- IFIH1 3
- IFITM5 2
- IFT122 1
- IFT140 2
- IFT172 2
- IFT43 1
- IFT52 1
- IFT74 1
- IFT80 1
- IHH 1
- IKBKG 1
- IL11RA 1
- IL1RN 1
- IMPAD1 1
- INPPL1 2
- KAT6B 1
- KCNJ2 1
- KIAA0586 1
- KIAA0753 2
- KIF22 2
- KIF5B 2
- KIF7 1
- KMT2D 1
- LBR 2
- LEMD3 1
- LFNG 1
- LIFR 2
- LMBR1 1
- LMNA 0
- LMX1B 2
- LONP1 1
- LPIN2 1
- LRP4 2
- LRP5 1
- LRRK1 1
- LTBP3 1
- MAB21L2 1
- MAFB 2
- MAN2B1 1
- MAP3K7 1
- MASP1 1
- MATN3 1
- MBTPS1 1
- MECOM 2
- MEGF8 1
- MEOX1 2
- MESD 1
- MESP2 1
- MGP 2
- MIR140 2
- MIR17HG 1
- MKKS 3
- MKS1 1
- MMP13 1
- MMP2 1
- MMP9 1
- MNX1 1
- MPDU1 1
- MSX2 1
- MTX2 1
- MYCN 2
- NAGLU 2
- NANS 1
- NBAS 1
- NEK1 2
- NEPRO 3
- NEU1 1
- NF1 1
- NFIX 1
- NIPBL 1
- NKX3-2 1
- NLRP3 1
- NOG 1
- NOTCH1 2
- NOTCH2 1
- NPR2 1
- NSD1 1
- NSDHL 2
- OBSL1 1
- OFD1 2
- ORC1 1
- ORC4 1
- ORC6 1
- OSTM1 1
- P3H1 1
- P4HB 1
- PAM16 1
- PAPSS2 1
- PAX3 1
- PCNT 1
- PCYT1A 1
- PDE3A 1
- PDE4D 2
- PEX5 1
- PEX7 1
- PGM3 1
- PHEX 1
- PHF6 1
- PHGDH 1
- PIGT 1
- PIGV 1
- PIK3C2A 2
- PIK3R1 2
- PISD 2
- PITX1 1
- PKDCC 3
- PLOD2 1
- PLS3 1
- POC1A 1
- POLR1A 2
- POLR1B 2
- POLR1C 1
- POLR1D 1
- POP1 1
- POR 2
- PPIB 1
- PRKAR1A 1
- PRKG2 2
- PRMT7 1
- PSAT1 2
- PSPH 1
- PTDSS1 1
- PTH1R 1
- PTHLH 1
- PTPN11 1
- PUF60 1
- PYCR1 3
- RAB23 1
- RAB33B 1
- RAB34 1
- RAB3GAP2 1
- RASGRP2 1
- RBM8A 1
- RBPJ 1
- RECQL4 1
- RFT1 1
- RIPPLY2 1
- RMRP 2
- RNU4ATAC 2
- ROR2 1
- RPGRIP1L 1
- RPL13 1
- RUNX2 1
- SALL1 1
- SALL4 2
- SBDS 1
- SCARF2 1
- SCUBE3 1
- SEC24D 1
- SEMA3A 2
- SERPINF1 1
- SERPINH1 1
- SETD2 2
- SF3B4 1
- SFRP4 2
- SGSH 1
- SH3BP2 2
- SH3PXD2B 1
- SHOX 1
- SKI 2
- SLC10A7 1
- SLC17A5 2
- SLC26A2 1
- SLC29A3 1
- SLC34A1 1
- SLC34A3 1
- SLC35C1 1
- SLC35D1 2
- SLC39A13 1
- SLCO2A1 1
- SMAD3 0
- SMAD4 1
- SMAD6 2
- SMARCAL1 1
- SMARCB1 1
- SMARCE1 1
- SMC1A 2
- SMC3 1
- SMOC1 1
- SNRPB 1
- SNX10 1
- SOST 1
- SOX11 2
- SOX9 1
- SP7 1
- SPARC 1
- SRP54 1
- STT3A 1
- SUMF1 1
- TAB2 1
- TALDO1 1
- TBCE 1
- TBX15 1
- TBX3 1
- TBX4 1
- TBX5 2
- TBX6 4
- TBXAS1 1
- TCIRG1 1
- TCOF1 1
- TCTEX1D2 1
- TCTN2 1
- TCTN3 1
- TERT 1
- TGFB1 1
- TGFB2 1
- TGFBR2 0
- TMCO1 1
- TMEM165 1
- TMEM216 1
- TMEM231 1
- TMEM38B 1
- TMEM53 1
- TNFRSF11A 1
- TNFRSF11B 1
- TNFSF11 1
- TONSL 2
- TP63 1
- TRAPPC2 1
- TREM2 1
- TRIP11 1
- TRPS1 1
- TRPV4 1
- TRPV6 1
- TTC21B 3
- TTC8 1
- TWIST1 1
- TYROBP 2
- UBA2 3
- UFSP2 2
- USP9X 1
- VDR 1
- WDPCP 1
- WDR19 1
- WDR34 1
- WDR35 2
- WDR60 1
- WISP3 1
- WNT1 1
- WNT10B 1
- WNT5A 1
- WNT7A 2
- XRCC4 2
- XYLT1 1
- XYLT2 1
- YY1 1
- ZMPSTE24 1
- ZSWIM6 2
- B9D1 3
- BNIP1 1
- CHST11 1
- CTGF 2
- FAM20B 1
- FGF8 2
- GNPNAT1 3
- HDAC4 3
- HNRNPK 2
- HYLS1 3
- IFT81 1
- MANBA 1
- MIA3 1
- MTAP 1
- RAD21 3
- RSPRY1 1
- SIK3 1
- SLC13A1 3
- TAPT1 3
- TMEM251 2
- ACVR2B 2
- ADGRV1 1
- ADI1 1
- AHI1 2
- AKT1 3
- ARL13B 1
- ATXN10 0
- B9D2 1
- BANF1 1
- BMP5 2
- C5orf42 1
- CCDC28B 3
- CCDC39 1
- CCDC40 1
- CD96 1
- CDC6 1
- CDH23 1
- CEP164 1
- CEP41 1
- CFTR 1
- CKAP2L 1
- CLRN1 1
- COL12A1 1
- COL5A1 1
- COLEC10 1
- CRB1 1
- CRELD1 2
- CRX 1
- DACT1 1
- DDX41 1
- DLX6 0
- DNAAF1 1
- DNAAF2 1
- DNAAF3 1
- DNAH11 2
- DNAH5 1
- DNAI1 1
- DNAI2 1
- DNAL1 1
- DOLPP1 0
- DPM2 1
- DPM3 1
- EP300 1
- ESR1 1
- ETF1 1
- FBLIM1 0
- FBLN1 2
- FBXW4 1
- FMN1 1
- FOXC1 2
- FOXH1 1
- GDF1 2
- GDF3 1
- GLIS2 1
- GREM1 1
- GUCY2D 1
- HDAC5 0
- HOXA11 1
- HOXD11 0
- IDH2 1
- IFT88 0
- INVS 1
- IQCB1 1
- LAMA5 2
- LCA5 1
- LEFTY2 2
- LOXL3 1
- LRAT 1
- LRP6 2
- LTBP2 1
- MAN2C1 2
- MCM5 1
- MMP14 0
- MYO7A 1
- NEK8 1
- NEK9 1
- NFATC2 1
- NIN 1
- NKX2-5 2
- NME8 1
- NODAL 2
- NPHP1 1
- NPHP3 2
- NPHP4 1
- NPPC 1
- OAT 1
- PCDH15 1
- PIK3CA 1
- PIN1 0
- PIR 0
- PKD2 1
- PKHD1 1
- PLCB3 1
- PLEKHM1 1
- PLOD1 1
- PTPRQ 1
- RD3 1
- RDH12 1
- RPE65 1
- RPGR 1
- RPGRIP1 2
- RSPH4A 1
- RSPH9 1
- SCNN1A 1
- SCNN1B 1
- SCNN1G 2
- SDCCAG8 1
- SEM1 0
- SHH 2
- SLCO5A1 0
- SOX8 1
- SPECC1L 1
- TCTN1 1
- TDP2 1
- TGDS 1
- THPO 1
- TMEM138 1
- TMEM237 1
- TMEM67 1
- TNXB 1
- TOPORS 2
- TRIM32 2
- TRMT10A 1
- TSC1 0
- TSC2 0
- TULP1 2
- UMOD 3
- USH1C 1
- USH1G 1
- USH2A 1
- VAC14 1
- VHL 0
- WHRN 1
- WNT3 1
- WRN 1
- XPNPEP3 1
- ZBTB16 1
- ZIC3 2
- ZNF423 2
STRs in panel
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Regions in panel
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-
2q37.3 terminal region (includes HDAC4) Loss
ISCA-37394-Loss 0 -
16p13.3 region (includes CREBBP) Loss
ISCA-37406-Loss 0 -
17p11.2 recurrent (SMS/PLS) region (includes RAI1) Loss
ISCA-37418-Loss 0 -
1p36 terminal region (includes GABRD) Loss
ISCA-37434-Loss 0 -
11p11.2 (Potocki-Shaffer syndrome) region (includes ALX4, EXT2) Loss
ISCA-37441-Loss 0 -
17q23.1q23.2 recurrent region (includes TBX2, TBX4) Loss
ISCA-37501-Loss 0
Skeletal dysplasia
Gene: WHRN Red List (low evidence)
WHRN (whirlin)
EnsemblGeneIds (GRCh38): ENSG00000095397
EnsemblGeneIds (GRCh37): ENSG00000095397
OMIM: 607928, Gene2Phenotype
WHRN is in 10 panels
EnsemblGeneIds (GRCh38): ENSG00000095397
EnsemblGeneIds (GRCh37): ENSG00000095397
OMIM: 607928, Gene2Phenotype
WHRN is in 10 panels
1 review
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)
Green List (high evidence)
Multiple transcripts with differential tissue expression exist for WHRN which are thought to explain the basis for distinct phenotypes. The long transcript is expressed in the retina, vestibule and cochlea, whereas the C-terminal transcript is expressed exclusively in the cochlea and vestibule and the N-terminal transcript is expressed exclusively in the retina (Ebrahim et al. 2016, PMID: 27117407).
Association with Usher syndrome: DEFINITIVE by ClinGen, multiple families and animal models. Of note, the Whrn(neo/neo) mouse model, in which the N-terminal and long transcripts are ablated, leads to Usher syndrome (Mather et al. 2015, PMID: 26307081).
Associated with isolated AR deafness: MODERATE by ClinGen. Of note, the Whrn(wi/wi) model, which disrupts only the long and C-terminal transcripts, results in a mouse with profound hearing loss and severe vestibular defect without a retinal phenotype (Ebrahim et al. 2016, PMID: 27117407). The Whrn(tm1b/tm1b) model disrupts the C-terminal transcripts, resulting in a mouse with mild-hearing loss and no vestibular or retinal defects (Ebrahim et al. 2016, PMID: 27117407). Several families reported with AR deafness, however, in many reports, there is insufficient phenotyping to be certain an eye phenotype is absent.Created: 1 Oct 2020, 6:03 a.m. | Last Modified: 1 Oct 2020, 6:03 a.m.
Panel Version: 0.4714
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Usher syndrome, type 2D, MIM# 611383; Deafness, autosomal recessive 31, MIM# 607084
Publications
Created: 1 Oct 2020, 6:03 a.m.
Last Modified: 1 Oct 2020, 6:03 a.m.
Panel version: Imported from Mendeliome panel version 0.4714
Last Modified: 1 Oct 2020, 6:03 a.m.
Panel version: Imported from Mendeliome panel version 0.4714
Details
- Sources
-
- Expert Review Green
- Emory Genetics Laboratory
- Victorian Clinical Genetics Services
- OMIM
- 607928
- Clinvar variants
- Variants in WHRN
- Penetrance
- None
- Panels with this gene
History Filter Activity
17 Dec 2019, Gel status: 1
Created, Added New Source, Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)gene: WHRN was added gene: WHRN was added to Skeletal dysplasia. Sources: Emory Genetics Laboratory Mode of inheritance for gene: WHRN was set to