- Panels
- Skeletal dysplasia
- TDP2
Genes in panel
- ABCC9 1
- ABL1 2
- ACAN 1
- ACP5 1
- ACVR1 2
- ADAMTS10 1
- ADAMTS17 1
- ADAMTSL2 1
- AFF3 1
- AFF4 2
- AGA 1
- AGPS 1
- ALG12 1
- ALG3 1
- ALG9 1
- ALPL 3
- ALX1 1
- ALX3 1
- ALX4 1
- AMER1 1
- ANKH 1
- ANKRD11 1
- ANO5 1
- ANTXR2 1
- ARHGAP31 2
- ARID1A 2
- ARID1B 2
- ARL6 1
- ARSB 1
- ARSE 1
- ARSK 1
- ASXL1 1
- ASXL2 1
- ATP6V0A2 1
- ATP7A 3
- AXIN1 2
- B3GALT6 1
- B3GAT3 1
- B3GLCT 1
- B4GALT7 2
- BBS1 2
- BBS10 1
- BBS12 2
- BBS2 1
- BBS4 1
- BBS5 1
- BBS7 1
- BBS9 1
- BGN 1
- BHLHA9 1
- BMP1 1
- BMP2 1
- BMPER 1
- BMPR1B 2
- C21orf2 1
- C2CD3 2
- CA2 2
- CANT1 1
- CASR 1
- CBFB 1
- CC2D2A 2
- CCDC8 1
- CDC45 1
- CDH3 1
- CDKN1C 1
- CDT1 1
- CEP120 1
- CEP290 1
- CHST14 1
- CHST3 1
- CHSY1 1
- CLCN5 1
- CLCN7 1
- COG1 1
- COG4 2
- COL10A1 2
- COL11A1 1
- COL11A2 1
- COL1A1 1
- COL1A2 1
- COL27A1 2
- COL2A1 1
- COL9A1 1
- COL9A2 1
- COL9A3 3
- COLEC11 1
- COMP 1
- CREB3L1 1
- CREBBP 1
- CRTAP 1
- CSGALNACT1 1
- CSPP1 1
- CTSA 1
- CTSC 2
- CTSK 1
- CUL7 1
- CYP26B1 1
- CYP27B1 1
- CYP2R1 1
- DCC 3
- DDR2 1
- DDRGK1 2
- DHCR24 2
- DHCR7 4
- DHODH 2
- DIS3L2 1
- DLL3 1
- DLL4 1
- DLX3 1
- DLX5 1
- DMP1 1
- DNAJC21 1
- DNMT3A 2
- DOCK6 1
- DONSON 1
- DPAGT1 1
- DPM1 1
- DSPP 1
- DVL1 2
- DVL3 1
- DYM 1
- DYNC2H1 1
- DYNC2LI1 2
- EBP 2
- EED 1
- EFL1 1
- EFTUD2 2
- EIF2AK3 1
- EN1 1
- ENPP1 1
- EOGT 1
- ERF 1
- ERI1 2
- ESCO2 1
- EVC 3
- EVC2 2
- EXOC6B 1
- EXT1 1
- EXT2 1
- EXTL3 1
- EZH2 2
- FAM111A 1
- FAM20C 1
- FAM46A 1
- FAM58A 1
- FBN1 0
- FBN2 2
- FERMT3 1
- FGF10 1
- FGF16 1
- FGF23 1
- FGF9 2
- FGFR1 2
- FGFR2 1
- FGFR3 1
- FIG4 0
- FKBP10 1
- FLNA 1
- FLNB 2
- FN1 1
- FUCA1 1
- FUZ 1
- FZD2 1
- GALNS 1
- GALNT3 1
- GDF5 3
- GDF6 3
- GHR 1
- GINS3 1
- GJA1 1
- GLB1 1
- GLI3 3
- GNAS 1
- GNPAT 1
- GNPTAB 2
- GNPTG 1
- GNS 1
- GORAB 1
- GPC6 3
- GPX4 1
- GSC 1
- GUSB 1
- GZF1 1
- HDAC8 1
- HES7 1
- HGSNAT 2
- HHAT 2
- HOXA13 1
- HOXD13 1
- HPGD 1
- HSPG2 3
- ICK 1
- IDH1 1
- IDS 1
- IDUA 2
- IFIH1 3
- IFITM5 2
- IFT122 1
- IFT140 2
- IFT172 2
- IFT43 1
- IFT52 1
- IFT74 1
- IFT80 1
- IHH 1
- IKBKG 1
- IL11RA 1
- IL1RN 1
- IMPAD1 1
- INPPL1 2
- KAT6B 1
- KCNJ2 1
- KIAA0586 1
- KIAA0753 2
- KIF22 2
- KIF5B 2
- KIF7 1
- KMT2D 1
- LBR 2
- LEMD3 1
- LFNG 1
- LIFR 2
- LMBR1 1
- LMNA 0
- LMX1B 2
- LONP1 1
- LPIN2 1
- LRP4 2
- LRP5 1
- LRRK1 1
- LTBP3 1
- MAB21L2 1
- MAFB 2
- MAN2B1 1
- MAP3K7 1
- MASP1 1
- MATN3 1
- MBTPS1 1
- MECOM 2
- MEGF8 1
- MEOX1 2
- MESD 1
- MESP2 1
- MGP 2
- MIR140 2
- MIR17HG 1
- MKKS 3
- MKS1 1
- MMP13 1
- MMP2 1
- MMP9 1
- MNX1 1
- MPDU1 1
- MSX2 1
- MTX2 1
- MYCN 2
- NAGLU 2
- NANS 1
- NBAS 1
- NEK1 2
- NEPRO 3
- NEU1 1
- NF1 1
- NFIX 1
- NIPBL 1
- NKX3-2 1
- NLRP3 1
- NOG 1
- NOTCH1 2
- NOTCH2 1
- NPR2 1
- NSD1 1
- NSDHL 2
- OBSL1 1
- OFD1 2
- ORC1 1
- ORC4 1
- ORC6 1
- OSTM1 1
- P3H1 1
- P4HB 1
- PAM16 1
- PAPSS2 1
- PAX3 1
- PCNT 1
- PCYT1A 1
- PDE3A 1
- PDE4D 2
- PEX5 1
- PEX7 1
- PGM3 1
- PHEX 1
- PHF6 1
- PHGDH 1
- PIGT 1
- PIGV 1
- PIK3C2A 2
- PIK3R1 2
- PISD 2
- PITX1 1
- PKDCC 3
- PLOD2 1
- PLS3 1
- POC1A 1
- POLR1A 2
- POLR1B 2
- POLR1C 1
- POLR1D 1
- POP1 1
- POR 2
- PPIB 1
- PRKAR1A 1
- PRKG2 2
- PRMT7 1
- PSAT1 2
- PSPH 1
- PTDSS1 1
- PTH1R 1
- PTHLH 1
- PTPN11 1
- PUF60 1
- PYCR1 3
- RAB23 1
- RAB33B 1
- RAB34 1
- RAB3GAP2 1
- RASGRP2 1
- RBM8A 1
- RBPJ 1
- RECQL4 1
- RFT1 1
- RIPPLY2 1
- RMRP 2
- RNU4ATAC 2
- ROR2 1
- RPGRIP1L 1
- RPL13 1
- RUNX2 1
- SALL1 1
- SALL4 2
- SBDS 1
- SCARF2 1
- SCUBE3 1
- SEC24D 1
- SEMA3A 2
- SERPINF1 1
- SERPINH1 1
- SETD2 2
- SF3B4 1
- SFRP4 2
- SGSH 1
- SH3BP2 2
- SH3PXD2B 1
- SHOX 1
- SKI 2
- SLC10A7 1
- SLC17A5 2
- SLC26A2 1
- SLC29A3 1
- SLC34A1 1
- SLC34A3 1
- SLC35C1 1
- SLC35D1 2
- SLC39A13 1
- SLCO2A1 1
- SMAD3 0
- SMAD4 1
- SMAD6 2
- SMARCAL1 1
- SMARCB1 1
- SMARCE1 1
- SMC1A 2
- SMC3 1
- SMOC1 1
- SNRPB 1
- SNX10 1
- SOST 1
- SOX11 2
- SOX9 1
- SP7 1
- SPARC 1
- SRP54 1
- STT3A 1
- SUMF1 1
- TAB2 1
- TALDO1 1
- TBCE 1
- TBX15 1
- TBX3 1
- TBX4 1
- TBX5 2
- TBX6 4
- TBXAS1 1
- TCIRG1 1
- TCOF1 1
- TCTEX1D2 1
- TCTN2 1
- TCTN3 1
- TERT 1
- TGFB1 1
- TGFB2 1
- TGFBR2 0
- TMCO1 1
- TMEM165 1
- TMEM216 1
- TMEM231 1
- TMEM38B 1
- TMEM53 1
- TNFRSF11A 1
- TNFRSF11B 1
- TNFSF11 1
- TONSL 2
- TP63 1
- TRAPPC2 1
- TREM2 1
- TRIP11 1
- TRPS1 1
- TRPV4 1
- TRPV6 1
- TTC21B 3
- TTC8 1
- TWIST1 1
- TYROBP 2
- UBA2 3
- UFSP2 2
- USP9X 1
- VDR 1
- WDPCP 1
- WDR19 1
- WDR34 1
- WDR35 2
- WDR60 1
- WISP3 1
- WNT1 1
- WNT10B 1
- WNT5A 1
- WNT7A 2
- XRCC4 2
- XYLT1 1
- XYLT2 1
- YY1 1
- ZMPSTE24 1
- ZSWIM6 2
- B9D1 3
- BNIP1 1
- CHST11 1
- CTGF 2
- FAM20B 1
- FGF8 2
- GNPNAT1 3
- HDAC4 3
- HNRNPK 2
- HYLS1 3
- IFT81 1
- MANBA 1
- MIA3 1
- MTAP 1
- RAD21 3
- RSPRY1 1
- SIK3 1
- SLC13A1 3
- TAPT1 3
- TMEM251 2
- ACVR2B 2
- ADGRV1 1
- ADI1 1
- AHI1 2
- AKT1 3
- ARL13B 1
- ATXN10 0
- B9D2 1
- BANF1 1
- BMP5 2
- C5orf42 1
- CCDC28B 3
- CCDC39 1
- CCDC40 1
- CD96 1
- CDC6 1
- CDH23 1
- CEP164 1
- CEP41 1
- CFTR 1
- CKAP2L 1
- CLRN1 1
- COL12A1 1
- COL5A1 1
- COLEC10 1
- CRB1 1
- CRELD1 2
- CRX 1
- DACT1 1
- DDX41 1
- DLX6 0
- DNAAF1 1
- DNAAF2 1
- DNAAF3 1
- DNAH11 2
- DNAH5 1
- DNAI1 1
- DNAI2 1
- DNAL1 1
- DOLPP1 0
- DPM2 1
- DPM3 1
- EP300 1
- ESR1 1
- ETF1 1
- FBLIM1 0
- FBLN1 2
- FBXW4 1
- FMN1 1
- FOXC1 2
- FOXH1 1
- GDF1 2
- GDF3 1
- GLIS2 1
- GREM1 1
- GUCY2D 1
- HDAC5 0
- HOXA11 1
- HOXD11 0
- IDH2 1
- IFT88 0
- INVS 1
- IQCB1 1
- LAMA5 2
- LCA5 1
- LEFTY2 2
- LOXL3 1
- LRAT 1
- LRP6 2
- LTBP2 1
- MAN2C1 2
- MCM5 1
- MMP14 0
- MYO7A 1
- NEK8 1
- NEK9 1
- NFATC2 1
- NIN 1
- NKX2-5 2
- NME8 1
- NODAL 2
- NPHP1 1
- NPHP3 2
- NPHP4 1
- NPPC 1
- OAT 1
- PCDH15 1
- PIK3CA 1
- PIN1 0
- PIR 0
- PKD2 1
- PKHD1 1
- PLCB3 1
- PLEKHM1 1
- PLOD1 1
- PTPRQ 1
- RD3 1
- RDH12 1
- RPE65 1
- RPGR 1
- RPGRIP1 2
- RSPH4A 1
- RSPH9 1
- SCNN1A 1
- SCNN1B 1
- SCNN1G 2
- SDCCAG8 1
- SEM1 0
- SHH 2
- SLCO5A1 0
- SOX8 1
- SPECC1L 1
- TCTN1 1
- TDP2 1
- TGDS 1
- THPO 1
- TMEM138 1
- TMEM237 1
- TMEM67 1
- TNXB 1
- TOPORS 2
- TRIM32 2
- TRMT10A 1
- TSC1 0
- TSC2 0
- TULP1 2
- UMOD 3
- USH1C 1
- USH1G 1
- USH2A 1
- VAC14 1
- VHL 0
- WHRN 1
- WNT3 1
- WRN 1
- XPNPEP3 1
- ZBTB16 1
- ZIC3 2
- ZNF423 2
STRs in panel
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Regions in panel
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-
2q37.3 terminal region (includes HDAC4) Loss
ISCA-37394-Loss 0 -
16p13.3 region (includes CREBBP) Loss
ISCA-37406-Loss 0 -
17p11.2 recurrent (SMS/PLS) region (includes RAI1) Loss
ISCA-37418-Loss 0 -
1p36 terminal region (includes GABRD) Loss
ISCA-37434-Loss 0 -
11p11.2 (Potocki-Shaffer syndrome) region (includes ALX4, EXT2) Loss
ISCA-37441-Loss 0 -
17q23.1q23.2 recurrent region (includes TBX2, TBX4) Loss
ISCA-37501-Loss 0
Skeletal dysplasia
Gene: TDP2 Red List (low evidence)
TDP2 (tyrosyl-DNA phosphodiesterase 2)
EnsemblGeneIds (GRCh38): ENSG00000111802
EnsemblGeneIds (GRCh37): ENSG00000111802
OMIM: 605764, Gene2Phenotype
TDP2 is in 5 panels
EnsemblGeneIds (GRCh38): ENSG00000111802
EnsemblGeneIds (GRCh37): ENSG00000111802
OMIM: 605764, Gene2Phenotype
TDP2 is in 5 panels
1 review
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)
Green List (high evidence)
ID is part of the phenotype: 4 families with 6 affected patients, with functional evidence.
1 family with 3 affected sibs with homozygous splice site mutation in the TDP2 gene. Patient cell extracts showed absence of the full-length TDP2 protein and absence of 5-prime TDP activity, consistent with a loss of function, although 3-prime TDP activity, conferred by TDP1, was normal. In addition, patient lymphoblastoid cells were hypersensitive to the TOP2 poison etoposide. The findings indicated impaired capacity for double-strand break repair.
1 unrelated Egyptian patient with a similar disorder was homozygous for a truncating mutation in the TDP2 gene
1 unrelated Caucasian patient with same homozygous splice site mutation in the TDP2 gene. Western blot analysis did not detect TDP2 protein in patient primary skin fibroblasts. Patient fibroblasts showed an inability to rapidly repair topoisomerase-induced DNA double-strand breaks in the nucleus and also showed a profound hypersensitivity to this type of DNA damage. Complementation of patient cells with recombinant human TDP2 restored normal rates of nuclear DSB repair.
Sources: Expert listCreated: 14 Jan 2020, 9:39 a.m.
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Spinocerebellar ataxia, autosomal recessive 23; OMIM #616949
Publications
Created: 14 Jan 2020, 9:39 a.m.
Panel version: Imported from Mendeliome panel version 0.788
Panel version: Imported from Mendeliome panel version 0.788
Details
- Sources
-
- Expert Review Green
- Expert list
- Radboud University Medical Center, Nijmegen
- Expert Review Red
- Phenotypes
-
- Dentinogenesis imperfecta, Shields type II, 125490
- OMIM
- 605764
- Clinvar variants
- Variants in TDP2
- Penetrance
- None
- Panels with this gene
History Filter Activity
17 Dec 2019, Gel status: 1
Created, Added New Source, Set mode of inheritance, Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)gene: TDP2 was added gene: TDP2 was added to Skeletal dysplasia. Sources: Expert Review Red,Radboud University Medical Center, Nijmegen Mode of inheritance for gene: TDP2 was set to Phenotypes for gene: TDP2 were set to Dentinogenesis imperfecta, Shields type II, 125490