1. Panels
  2. Congenital abnormalities of the kidneys and urinary tract (CAKUT)_SuperPanel

Congenital abnormalities of the kidneys and urinary tract (CAKUT)_SuperPanel (Version 1.95)

Level 2: Renal and urinary tract disorders

Relevant disorders: Abnormality of the urinary system HP:0000079
This panel contains these 3 panels:
Renal Tubular Dysgenesis v1.1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
Panel types: Superpanel, Victorian Clinical Genetics Services, KidGen, Royal Melbourne Hospital, Rare Disease
Description
This is a superpanel made up of the syndromic and non-syndromic CAKUT gene panels, as well as the renal tubular dysgenesis panel.

This is a consensus panel for the KidGen Collaborative and VCGS.

16/01/2020: This panel has been compared with the Genomics England PanelApp CAKUT panel. All discrepant gene-disease assessments have been reviewed and resolved by Chirag Patel and Zornitza Stark, with reciprocal reviews provided to Genomics England.

123 Entities

122 reviewed, 85 green

List Entity Reviews Mode of inheritance Details
123 Entitiess
Green List (high evidence)
ACE
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal tubular dysgenesis, MIM# 267430
Tags
Green List (high evidence)
ACE
Renal Tubular Dysgenesis v1.1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal tubular dysgenesis, MIM# 267430
Tags
Green List (high evidence)
ACTG2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Visceral myopathy, MIM# 155310
Tags
Green List (high evidence)
AFF3
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • KINSSHIP syndrome, MIM# 619297
Tags
Green List (high evidence)
AGT
Renal Tubular Dysgenesis v1.1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal tubular dysgenesis, MIM# 267430
Tags
Green List (high evidence)
AGT
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal tubular dysgenesis, MIM# 267430
Tags
Green List (high evidence)
AGTR1
Renal Tubular Dysgenesis v1.1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal tubular dysgenesis, MIM# 267430
Tags
Green List (high evidence)
AGTR1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal tubular dysgenesis, MIM# 267430
Tags
Green List (high evidence)
ANOS1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
BMP4
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • CAKUT
Tags
Green List (high evidence)
BNC2
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
  • Expert Review Green
  • Literature
Phenotypes
  • Lower urinary tract obstruction, congenital
  • OMIM #618612
Tags
Green List (high evidence)
CDX2
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Genetic multiple congenital anomalies/dysmorphic syndrome, MONDO:0043005
  • Congenital abnormalities of anus, renal and urogenital system, vertebrae and/or the limbs
Tags
Green List (high evidence)
CELSR3
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental disorder (MONDO#0700092), CELSR3-related
Tags
Green List (high evidence)
CENPF
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Stromme syndrome, MIM#243605
Tags
Green List (high evidence)
CEP55
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review
Phenotypes
  • Multinucleated neurons, anhydramnios, renal dysplasia, cerebellar hypoplasia, and hydranencephaly, MIM#236500
Tags
Green List (high evidence)
CHD7
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • CHARGE syndrome MIM#214800
Tags
Green List (high evidence)
CHRNA3
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Bladder dysfunction, autonomic, with impaired pupillary reflex and secondary CAKUT, MIM# 191800
Tags
Green List (high evidence)
CTU2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review Green
  • Expert list
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Microcephaly, facial dysmorphism, renal agenesis, and ambiguous genitalia syndrome
Tags
Green List (high evidence)
DHCR7
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
5 reviews
4 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • NHS GMS
  • Expert Review Green
  • Expert list
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Smith-Lemli-Opitz syndrome
  • OMIM #270400
Tags
Green List (high evidence)
DYRK1A
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Mental retardation, autosomal dominant 7 (MIM#614104)
Tags
Green List (high evidence)
EXOC3L2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Brain malformation renal syndrome, MIM# 620943
Tags
Green List (high evidence)
EYA1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Expert Review Green
  • Victorian Clinical Genetics Services
Tags
Green List (high evidence)
FAM58A
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
Other
Sources
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • STAR syndrome, MIM# 300707
Tags
Green List (high evidence)
FOXP1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review
Phenotypes
  • Mental retardation with language impairment and with or without autistic features, MIM# 613670
Tags
Green List (high evidence)
FRAS1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FREM1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
FREM2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
GATA3
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Hypoparathyroidism, sensorineural deafness, and renal dysplasia, MIM# 146255
Tags
Green List (high evidence)
GDF6
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
2 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Syndromic CAKUT
Tags
Green List (high evidence)
GFRA1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Renal hypodysplasia/aplasia 4, MIM# 619887
Tags
Green List (high evidence)
GLI3
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
3 green
Unknown
Sources
  • Expert Review Green
  • Expert Review Green
  • Expert list
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
GPC3
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
GREB1L
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal hypodysplasia/aplasia 3, OMIM# 617805
Tags
Green List (high evidence)
GRIP1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Fraser syndrome 3 MIM#617667
  • CAKUT
Tags
Green List (high evidence)
HAAO
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • NHS GMS
  • Expert Review Green
  • Expert list
Phenotypes
  • Vertebral, cardiac, renal, and limb defects syndrome 1, MIM#617660
Tags
Green List (high evidence)
HNF1B
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
HOXA13
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
HPSE2
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Urofacial syndrome 1 MIM#236730
Tags
Green List (high evidence)
HS2ST1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
3 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review
  • Expert Review Green
  • NHS GMS
  • Literature
Phenotypes
  • Neurofacioskeletal syndrome with or without renal agenesis, MIM#619194
Tags
Green List (high evidence)
HSPA9
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Even-plus syndrome, MIM# 616854
  • skeletal anomalies
  • congenital cardiac and renal anomalies: marked small nose
Tags
Green List (high evidence)
ITGA8
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal hypodysplasia/aplasia 1, MIM# 191830
Tags
Green List (high evidence)
JAG1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green
Unknown
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
KDM6A
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
KIF14
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • Microcephaly 20, primary, autosomal recessive, OMIM #617914
  • ?Meckel syndrome 12, OMIM #616258
Tags
Green List (high evidence)
KMT2D
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
KYNU
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • NHS GMS
  • Expert Review Green
  • Expert list
Phenotypes
  • Vertebral, cardiac, renal, and limb defects syndrome 2, MIM#617661
Tags
Green List (high evidence)
LIFR
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
3 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • CAKUT MONDO:0019719, LIFR-related
Tags
Green List (high evidence)
LRIG2
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
LRP4
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
MYOCD
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BOTH monoallelic and biallelic, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Megabladder
  • congenital heart disease
  • cardiomyopathy
Tags
Green List (high evidence)
NADSYN1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Vertebral, cardiac, renal, and limb defects syndrome 3, MONDO:0030077
  • Vertebral, cardiac, renal, and limb defects syndrome 3, OMIM:618845
Tags
Green List (high evidence)
NFIA
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review
Phenotypes
  • Brain malformations with or without urinary tract defects - MIM#613735
Tags
Green List (high evidence)
NIPBL
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
NOTCH2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Alagille syndrome 2 (MIM#610205)
  • Hajdu-Cheney syndrome (MIM#102500)
Tags
Green List (high evidence)
NPHP3
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
1 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal-hepatic-pancreatic dysplasia 1, MIM# 208540
Tags
Green List (high evidence)
NPNT
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Renal agenesis, MONDO:0018470, NPNT-related
Tags
Green List (high evidence)
NR6A1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Craniofacial microsomia MONDO:0015397
Tags
Green List (high evidence)
PAN2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Expert Review Green
Phenotypes
  • Syndromic disease MONDO:0002254
Tags
Green List (high evidence)
PAX2
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
Unknown
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
PBX1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay, OMIM #617641
Tags
Green List (high evidence)
REN
Renal Tubular Dysgenesis v1.1
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal tubular dysgenesis, MIM# 267430
Tags
Green List (high evidence)
REN
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal tubular dysgenesis, MIM# 267430
Tags
Green List (high evidence)
RET
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
0 reviews
Unknown
Sources
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
ROBO1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Neurooculorenal syndrome, MIM# 620305
Tags
Green List (high evidence)
ROBO2
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
ROR2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
SALL1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
Unknown
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
  • Expert Review Green
Tags
Green List (high evidence)
SALL4
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • SALL4- related disorders
Tags
Green List (high evidence)
SHROOM4
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • Congenital anomaly of the kidney and urinary tracy (CAKUT), SHROOM4-related, MONDO:0019719
Tags
Green List (high evidence)
SLC20A1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Bladder-Exstrophy-Epispadias Complex (BEEC), MONDO:0017919, SLC20A1-related
Tags
Green List (high evidence)
SON
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review
Phenotypes
  • ZTTK syndrome, MIM# 617140
Tags
Green List (high evidence)
STRA6
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Microphthalmia, isolated, with coloboma 8, MIM#601186
Tags
Green List (high evidence)
TBC1D1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Green
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • CAKUT
Tags
Green List (high evidence)
TBX18
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Congenital anomalies of kidney and urinary tract 2, MIM# 143400
Tags
Green List (high evidence)
TBX6
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Mayer-Rokitansky-Küster-Hauser syndrome, MONDO:0017771, TBX6-related
  • Combined skeletal-kidney dysplasia syndrome
Tags
Green List (high evidence)
TFAP2A
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Branchiooculofacial syndrome, MIM# 113620
Tags
Green List (high evidence)
TMEM260
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review
Phenotypes
  • Structural heart defects and renal anomalies syndrome, MIM# 617478
Tags
Green List (high evidence)
TOP2B
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • B-cell immunodeficiency, distal limb anomalies, and urogenital malformations, MIM# 609296
Tags
Green List (high evidence)
TRAP1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • CAKUT
  • VACTERL
Tags
Green List (high evidence)
WBP11
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Literature
  • Literature
Phenotypes
  • Vertebral, cardiac, tracheoesophageal, renal, and limb defects, MIM# 619227
  • malformation syndrome affecting the cardiac, skeletal, gastrointestinal and renal systems
Tags
Green List (high evidence)
WDR44
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Ciliopathy, MONDO:0005308, WDR44-related
Tags
Green List (high evidence)
WLS
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Zaki syndrome, MIM#619648
Tags
Green List (high evidence)
WNT5A
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • Robinow syndrome, autosomal dominant 1, MIM#180700
Tags
Green List (high evidence)
ZIC3
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Green
  • Expert list
Phenotypes
  • VACTERL association, X-linked, MIM#314390
Tags
Green List (high evidence)
ZMYM2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
2 green
MONOALLELIC, autosomal or pseudoautosomal, imprinted status unknown
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Neurodevelopmental-craniofacial syndrome with variable renal and cardiac abnormalities, MIM# 619522
Tags
Amber List (moderate evidence)
BCORL1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
X-LINKED: hemizygous mutation in males, biallelic mutations in females
Sources
  • Expert Review Amber
  • Expert Review
Phenotypes
  • Congenital anomaly of the kidney and urinary tract, MONDO:0019719, BCORL1-related
Tags
Amber List (moderate evidence)
COQ7
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
2 green 1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Green
  • Expert Review Amber
  • Expert list
Phenotypes
  • Coenzyme Q10 deficiency, primary, 8, MIM#616733
Tags
Amber List (moderate evidence)
DACT1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • NHS GMS
  • Expert list
Phenotypes
  • Townes-Brocks syndrome 2, MIM#617466
Tags
Amber List (moderate evidence)
FGF20
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Renal hypodysplasia/aplasia 2, MIM#615721
Tags
Amber List (moderate evidence)
FOXC1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
3 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Amber
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • Congenital anomalies of the kidney and urinary tract (CAKUT)
Tags
Amber List (moderate evidence)
FOXC1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Congenital anomalies of the kidney and urinary tract (CAKUT)
Tags
Amber List (moderate evidence)
PTCH1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Other
Phenotypes
  • Bladder exstrophy and epispadias complex (BEEC)
Tags
Amber List (moderate evidence)
SIX5
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Branchiootorenal syndrome 2, MIM# 610896
Tags
  • disputed
Amber List (moderate evidence)
SLIT2
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • CAKUT
Tags
Amber List (moderate evidence)
SOX11
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Expert list
Phenotypes
  • Congenital abnormalities of the kidneys and urinary tract
Tags
Amber List (moderate evidence)
SRGAP1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • CAKUT
Tags
Amber List (moderate evidence)
TSHZ3
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Amber
  • Literature
Phenotypes
  • congenital anomaly of kidney and urinary tract MONDO:0019719
Tags
Amber List (moderate evidence)
WNT9B
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert Review Amber
  • Literature
  • Victorian Clinical Genetics Services
Phenotypes
  • Renal agenesis/hypoplasia/dysplasia, no OMIM #
Tags
Red List (low evidence)
BICC1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
2 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • {Renal dysplasia, cystic, susceptibility to}
  • OMIM #601331
Tags
Red List (low evidence)
BMP7
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Expert list
Phenotypes
  • Congenital abnormalities of the kidneys and urinary tract
Tags
Red List (low evidence)
CBWD1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • CAKUT
Tags
Red List (low evidence)
CDC5L
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Expert list
Phenotypes
  • Congenital abnormalities of the kidneys and urinary tract
Tags
Red List (low evidence)
CHD1L
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
3 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • CAKUT
Tags
  • disputed
Red List (low evidence)
CHRM5
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • Congenital anomaly of kidney and urinary tract, (MONDO:0019719), CHRM5-related
Tags
Red List (low evidence)
DSTYK
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Congenital anomalies of kidney and urinary tract 1, MIM# 610805
Tags
  • disputed
Red List (low evidence)
EZH2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
2 green 1 red
Unknown
Sources
  • Expert Review Green
  • Expert Review Red
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
FGF10
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • LADD syndrome
  • OMIM #149730
Tags
Red List (low evidence)
FGF8
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
3 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Red
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Hypogonadotropic hypogonadism 6 with or without anosmia
  • OMIM #612702
Tags
Red List (low evidence)
FGFR1
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
1 green
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
FGFR2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green 1 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
FGFR3
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
3 reviews
2 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Red
  • Expert list
Phenotypes
  • LADD syndrome, MIM#149730
Tags
Red List (low evidence)
FOXC2
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Red
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus
  • OMIM #153400
Tags
Red List (low evidence)
HOXA4
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
2 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
HOXB6
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
3 reviews
2 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
SEMA3A
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green 1 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
SIX1
Congenital anomalies of the kidney and urinary tract (CAKUT) Syndromic v0.145
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Branchiootic syndrome 3, MIM#608389
  • Deafness, autosomal dominant 23, MIM# 605192
Tags
Red List (low evidence)
SIX2
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • CAKUT
Tags
Red List (low evidence)
SOX17
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
1 green 1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Green
  • Expert Review Red
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • Vesicoureteral reflux 3
  • OMIM #613674
Tags
Red List (low evidence)
TBC1D31
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Red
  • Literature
Phenotypes
  • congenital anomaly of kidney and urinary tract MONDO:0019719, TBC1D31-related
Tags
Red List (low evidence)
TNXB
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 red
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Phenotypes
  • Vesicoureteral reflux 8, MIM# 615963
Tags
Red List (low evidence)
UMOD
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
3 reviews
2 green 1 red
Unknown
Sources
  • Expert Review Green
  • Expert Review Red
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
UPK3A
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
1 review
1 red
Unknown
Sources
  • Expert Review Red
  • Victorian Clinical Genetics Services
Tags
Red List (low evidence)
WNT4
Congenital anomalies of the kidney and urinary tract (CAKUT) Nonsyndromic v0.119
2 reviews
1 red
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review Amber
  • Expert Review Red
  • Victorian Clinical Genetics Services
  • Victorian Clinical Genetics Services
Phenotypes
  • SERKAL syndrome
  • OMIM #611812
Tags

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  • Whole panel
  • Green list (high evidence)
  • Green and Amber Genes
  • Amber Genes
  • Red list (low evidence)

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