Common Variable Immunodeficiency

Gene: PTEN

Green List (high evidence)

PTEN (phosphatase and tensin homolog)
EnsemblGeneIds (GRCh38): ENSG00000171862
EnsemblGeneIds (GRCh37): ENSG00000171862
OMIM: 601728, Gene2Phenotype
PTEN is in 31 panels

2 reviews

Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

Green List (high evidence)

- PMID: 32588888 (2020) - Sequencing of the T-cell receptor variable-region β-chain using peripheral blood from patients with PTEN hamartoma tumour syndrome (PHTS), revealed that patients with PTEN variants had a skewed T- and B-cell gene repertoire, characterised by increased prevalence of high-frequency clones, compared to PTEN wild-type population.

Pten knock-in murine models similarly exhibited skewed immune repertoire compositions. Mutants also displayed B-cell hyperactivation and T-cell hyper-reactivity upon Toll-like-receptor stimulation. Decreases in nuclear but not cytoplasmic Pten levels were associated with reduced expression of the autoimmune regulator (Aire), indicating that nuclear PTEN likely regulates Aire expression via its emerging role in splicing regulation.

Authors speculate that such disruptions in central immune tolerance processes due to PTEN variants may impact individual stress responses and therefore predisposition to chronic inflammation, autoimmunity and cancer.
Created: 22 Sep 2020, 9:57 p.m. | Last Modified: 22 Sep 2020, 9:57 p.m.
Panel Version: 0.94

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Skewed immune repertoire composition

Publications

Bryony Thompson (Royal Melbourne Hospital)

Green List (high evidence)

At least 4 unrelated probands with PTEN loss of function variants have been reported with hypogammaglobulinemia, fulfilling the common variable immunodeficiency (CVID) disorders diagnostic criteria.
On the IUIS CVID phenotype gene list for human inborn errors of immunity (PMID: 32048120).
Sources: Expert list
Created: 21 Jul 2020, 6:02 a.m.

Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted

Phenotypes
Macrocephaly/autism syndrome MIM#605309; Cowden syndrome 1 MIM#158350

Publications

History Filter Activity

22 Sep 2020, Gel status: 3

Set publications

Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

Publications for gene: PTEN were set to 27531073; 27426521; 32588888

22 Sep 2020, Gel status: 3

Set Phenotypes

Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

Phenotypes for gene: PTEN were changed from Macrocephaly/autism syndrome MIM#605309; Cowden syndrome 1 MIM#158350 to Macrocephaly/autism syndrome MIM#605309; Cowden syndrome 1 MIM#158350; Skewed immune repertoire composition

22 Sep 2020, Gel status: 3

Set publications

Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

Publications for gene: PTEN were set to 27531073; 27426521

21 Jul 2020, Gel status: 3

Entity classified by Genomics England curator

Bryony Thompson (Royal Melbourne Hospital)

Gene: pten has been classified as Green List (High Evidence).

21 Jul 2020, Gel status: 3

Entity classified by Genomics England curator

Bryony Thompson (Royal Melbourne Hospital)

Gene: pten has been classified as Green List (High Evidence).

21 Jul 2020, Gel status: 1

Created, Added New Source, Set mode of inheritance, Set publications, Set Phenotypes

Bryony Thompson (Royal Melbourne Hospital)

gene: PTEN was added gene: PTEN was added to Common Variable Immunodeficiency. Sources: Expert list Mode of inheritance for gene: PTEN was set to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted Publications for gene: PTEN were set to 27531073; 27426521 Phenotypes for gene: PTEN were set to Macrocephaly/autism syndrome MIM#605309; Cowden syndrome 1 MIM#158350 Review for gene: PTEN was set to GREEN