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  2. Tuberous Sclerosis_Focal Cortical Dysplasia_Hemimegalencephaly

Tuberous Sclerosis_Focal Cortical Dysplasia_Hemimegalencephaly (Version 0.48)

Level 2: Neurology and neurodevelopmental disorders

Relevant disorders: Focal cortical dysplasia HP:0032046;Hemimegalencephaly HP:0007206
Panel types: Australian Genomics, Victorian Clinical Genetics Services, Royal Melbourne Hospital, Rare Disease
Description
This panel was developed and used by the Australian Genomics Brain Malformations Flagship. It is maintained by VCGS.

Where imaging and clinical features are less specific, consider applying the Malformations of Cortical Development superpanel.
Panel Activity

10 reviewers

  • Lauren Akesson (Royal Melbourne Hospital)

  • Alison Yeung (Victorian Clinical Genetics Services)

  • Shannon LeBlanc (Victorian Clinical Genetics Services)

  • Paul De Fazio (Victorian Clinical Genetics Services)

  • Ain Roesley (Victorian Clinical Genetics Services)

  • Krithika Murali (Victorian Clinical Genetics Services)

  • Dean Phelan (Victorian Clinical Genetics Services)

  • Elena Savva (Victorian Clinical Genetics Services)

  • Seb Lunke (Victorian Clinical Genetics Services)

  • Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)

12 Entities

12 reviewed, 10 green

List Entity Reviews Mode of inheritance Details
12 Entitiess
Green List (high evidence)
AKT3
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2, MIM# 615937
Tags
Green List (high evidence)
CNTNAP2
1 review
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Expert Review
  • Expert Review Green
Phenotypes
  • Cortical dysplasia-focal epilepsy syndrome, MIM# 610042
Tags
Green List (high evidence)
DEPDC5
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Epilepsy, familial focal, with variable foci 1 (MIM#604364)
Tags
Green List (high evidence)
MTOR
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Smith-Kingsmore syndrome, MIM# 616638
Tags
Green List (high evidence)
NPRL2
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Epilepsy, familial focal, with variable foci 2- MIM#617116
Tags
Green List (high evidence)
NPRL3
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Epilepsy, familial focal, with variable foci 3 (MIM#617118)
Tags
Green List (high evidence)
PTEN
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Cowden syndrome 1 158350
  • Lhermitte-Duclos syndrome 158350
  • Macrocephaly/autism syndrome 605309
Tags
Green List (high evidence)
SLC35A2
2 reviews
2 green
X-LINKED: hemizygous mutation in males, monoallelic mutations in females may cause disease (may be less severe, later onset than males)
Sources
  • Expert Review Green
  • Literature
Phenotypes
  • Mild malformation of cortical development with oligodendroglial hyperplasia in epilepsy (MOGHE)
Tags
  • somatic
Green List (high evidence)
TSC1
1 review
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Tuberous sclerosis-1, 191100
  • Autosomal dominant Focal cortical dysplasia, type II, somatic, 607341
Tags
  • SV/CNV
Green List (high evidence)
TSC2
2 reviews
1 green
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Green
  • Victorian Clinical Genetics Services
Phenotypes
  • Tuberous sclerosis-2, MIM# 613254
Tags
Amber List (moderate evidence)
BRAF
2 reviews
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • RASopathies
  • Focal cortical dysplasia
Tags
  • somatic
Amber List (moderate evidence)
STRADA
2 reviews
1 green
BIALLELIC, autosomal or pseudoautosomal
Sources
  • Australian Genomics Health Alliance Brain Malformations Flagship
  • Expert Review Amber
  • Victorian Clinical Genetics Services
Phenotypes
  • Polyhydramnios, megalencephaly, and symptomatic epilepsy (MIM#611087)
Tags

Downloads

Download lists

  • Whole panel
  • Green list (high evidence)
  • Green and Amber Genes
  • Amber Genes
  • Red list (low evidence)

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