Osteogenesis Imperfecta and Osteoporosis
Gene: TAPT1EnsemblGeneIds (GRCh38): ENSG00000169762
EnsemblGeneIds (GRCh37): ENSG00000169762
OMIM: 612758, Gene2Phenotype
TAPT1 is in 6 panels
2 reviews
Paul De Fazio (Victorian Clinical Genetics Services)
PMID: 36697720 - reports a patient with a biallelic frameshift variant in an infant with bilateral cateract, dysmorphic features, poor weight gain, and clinical symptoms reminiscent of osteogenesis imperfecta. A zebrafish knockout model showed aberrant lens development but no visible skeletal involvement.
PMID: 36652330 - identified 6 patients from 2 consanguineous families with recessive osteogenesis imperfecta (OI), severe developmental delay and neonatal progeria. All were homozygous for a deep intronic variant c.1237-52 G>A. Functional testing showed that transcription was not affected in patient fibroblasts but suggested a defect in pre-mRNA processing, resulting in an increase of TAPT1 exon 12 skipping, creating a protein-null allele, although a small amount of WT expression remained.
Rated Amber due to ? phenotype inconsistency with previous reports, and uncertainty around pathogenicity of the deep intronic variant.Created: 1 Jun 2023, 2:25 a.m. | Last Modified: 1 Jun 2023, 2:25 a.m.
Panel Version: 0.106
Phenotypes
Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck type (MIM#616897)
Publications
Variants in this GENE are reported as part of current diagnostic practice
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)
2 families reported with function studies showing absent or abnormal primary cillia formation. Amber/Green pending additional reports PMID: 26365339; Reported 2 consang fam (1 splice and 1 missense) with Complex Lethal Osteochondrodysplasia. Functional studies showed abnormal ciliogenesis. Tapt1b deficient zebrafish showed decreased cilial lengthCreated: 4 May 2020, 11:08 a.m. | Last Modified: 4 May 2020, 11:08 a.m.
Panel Version: 0.10
Mode of inheritance
BIALLELIC, autosomal or pseudoautosomal
Phenotypes
Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck type (MIM#616897)
Publications
Details
- Mode of Inheritance
- BIALLELIC, autosomal or pseudoautosomal
- Sources
-
- Expert Review Amber
- Victorian Clinical Genetics Services
- Phenotypes
-
- Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck type (MIM#616897)
- OMIM
- 612758
- Clinvar variants
- Variants in TAPT1
- Penetrance
- None
- Publications
- Panels with this gene
History Filter Activity
Set publications
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Publications for gene: TAPT1 were set to 26365339
Entity classified by Genomics England curator
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Gene: tapt1 has been classified as Amber List (Moderate Evidence).
Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Phenotypes for gene: TAPT1 were changed from to Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck type (MIM#616897)
Set publications
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Publications for gene: TAPT1 were set to
Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Mode of inheritance for gene: TAPT1 was changed from BIALLELIC, autosomal or pseudoautosomal to BIALLELIC, autosomal or pseudoautosomal
Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Mode of inheritance for gene: TAPT1 was changed from Unknown to BIALLELIC, autosomal or pseudoautosomal
Entity classified by Genomics England curator
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Gene: tapt1 has been classified as Amber List (Moderate Evidence).
Created, Added New Source, Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)gene: TAPT1 was added gene: TAPT1 was added to Osteogenesis imperfecta_VCGS. Sources: Expert Review Green,Victorian Clinical Genetics Services Mode of inheritance for gene: TAPT1 was set to Unknown