Holoprosencephaly and septo-optic dysplasia
Gene: SHHEnsemblGeneIds (GRCh38): ENSG00000164690
EnsemblGeneIds (GRCh37): ENSG00000164690
OMIM: 600725, Gene2Phenotype
SHH is in 15 panels
3 reviews
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)
Comment when marking as ready: DISPUTED association with schizencephalyCreated: 24 Apr 2022, 1:27 a.m. | Last Modified: 24 Apr 2022, 1:27 a.m.
Panel Version: 0.13175
Samantha Ayres (Victorian Clinical Genetics Services)
Notes from previous reviews:
Microphthalmia and coloboma reported either in isolation or as part of the HPE spectrum.
Well reported for Holoprosencephaly
Only one individual reported with schizencephaly. Individual had a maternally inherited heterozygous missense variant. Mother was unaffected. The variant has >500 hets and 9 homozygotes in gnomAD, with an East Asian subpop frequency of >3%, although the region is poorly covered in gnomAD (08/2020)Created: 20 Apr 2022, 3:04 a.m. | Last Modified: 20 Apr 2022, 3:04 a.m.
Panel Version: 0.13096
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
Holoprosencephaly 3, MIM#142945; Microphthalmia with coloboma 5, MIM#611638; Schizencephaly, MIM#269160; Single median maxillary central incisor, MIM#147250
Publications
Teresa Zhao (Victorian Clinical Genetics Services)
well reported for HoloprosencephalyCreated: 26 Oct 2020, 2:05 a.m. | Last Modified: 26 Oct 2020, 2:05 a.m.
Panel Version: 0.45
Mode of inheritance
MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Phenotypes
1. Holoprosencephaly 3 (MIM#142945), AD; 2. Microphthalmia with coloboma 5 (MIM#611638), AD; 3. Schizencephaly (MIM#269160); 4. Single median maxillary central incisor (MIM#147250) AD
Publications
Details
- Mode of Inheritance
- MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
- Sources
-
- Expert Review Green
- Expert Review Green
- Victorian Clinical Genetics Services
- Victorian Clinical Genetics Services
- Phenotypes
-
- Holoprosencephaly 3 (MIM#142945)
- OMIM
- 600725
- Clinvar variants
- Variants in SHH
- Penetrance
- None
- Publications
- Panels with this gene
-
- Polydactyly
- Clefting disorders
- BabyScreen+ newborn screening
- Pituitary hormone deficiency
- Intellectual disability syndromic and non-syndromic
- Genetic Epilepsy
- Holoprosencephaly and septo-optic dysplasia
- Anophthalmia_Microphthalmia_Coloboma
- Skeletal dysplasia
- Fetal anomalies
- Additional findings_Paediatric
- Choanal atresia
- Mendeliome
- Polymicrogyria and Schizencephaly
- Callosome
History Filter Activity
Entity classified by Genomics England curator
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Gene: shh has been classified as Green List (High Evidence).
Set Phenotypes
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Phenotypes for gene: SHH were changed from to Holoprosencephaly 3 (MIM#142945)
Set publications
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Publications for gene: SHH were set to
Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)Mode of inheritance for gene: SHH was changed from Unknown to MONOALLELIC, autosomal or pseudoautosomal, NOT imprinted
Created, Added New Source, Set mode of inheritance
Zornitza Stark (Victorian Clinical Genetics Services; Australian Genomics)gene: SHH was added gene: SHH was added to Holoprosencephaly and septo-optic dysplasia_VCGS. Sources: Expert Review Green,Victorian Clinical Genetics Services Mode of inheritance for gene: SHH was set to Unknown